Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT5G37360 Arabidopsis thaliana HOM05D000780 ORTHO05D009033 1.1e-162 576.6 310 100.0
AL7G45990 Arabidopsis lyrata HOM05D000780 ORTHO05D009033 5.4e-149 531.2 310 93.9
Carub.0007s3248 Capsella rubella HOM05D000780 ORTHO05D009033 7.1e-141 504.2 304 90.5
Sp7g05110 Schrenkiella parvula HOM05D000780 ORTHO05D009033 3.3e-130 468.8 307 83.4
CARHR215730 Cardamine hirsuta HOM05D000780 ORTHO05D009033 2.8e-129 465.7 308 83.4
Thhalv10027857m.g Eutrema salsugineum HOM05D000780 ORTHO05D009033 7.1e-125 451.1 308 81.2
BraA04t16719Z Brassica rapa HOM05D000780 ORTHO05D009033 3.5e-124 448.7 307 80.5
C04p44170 Brassica napus HOM05D000780 ORTHO05D009033 1.8e-123 446.4 306 80.1
BcaC02g09559 Brassica carinata HOM05D000780 ORTHO05D009033 1.1e-122 443.7 307 79.5
BolC4t25992H Brassica oleracea HOM05D000780 ORTHO05D009033 1.1e-122 443.7 307 79.5
A04p10530 Brassica napus HOM05D000780 ORTHO05D009033 2.1e-121 439.5 309 79.6
Aa31LG9G18020 Aethionema arabicum HOM05D000780 ORTHO05D009033 4.2e-109 398.7 315 72.4
THA.LOC104821566 Tarenaya hassleriana HOM05D000780 ORTHO05D009033 7.9e-108 394.4 323 69.0
Atru.chr2.1117 Acer truncatum HOM05D000780 ORTHO05D009033 7.6e-103 377.9 311 67.5
Gohir.D13G172200 Gossypium hirsutum HOM05D000780 ORTHO05D009033 4.3e-98 362.1 312 65.4
Gohir.A13G161800 Gossypium hirsutum HOM05D000780 ORTHO05D009033 2.2e-97 359.8 311 65.0
Gorai.013G188500 Gossypium raimondii HOM05D000780 ORTHO05D009033 2.2e-97 359.8 311 65.3
Ciclev10021307m.g Citrus clementina HOM05D000780 ORTHO05D009033 5.3e-96 355.1 311 65.0
Thecc.05G266300 Theobroma cacao HOM05D000780 ORTHO05D009033 9.1e-96 354.4 313 64.9
Duzib177G0863 Durio zibethinus HOM05D000780 ORTHO05D009033 7.2e-93 344.7 312 65.1
MD12G1251900 Malus domestica HOM05D000780 ORTHO05D009033 3.6e-92 342.4 308 61.0
Potri.019G023700 Populus trichocarpa HOM05D000780 ORTHO05D009033 4.7e-92 342.0 304 63.5
Manes.09G146600 Manihot esculenta HOM05D000780 ORTHO05D009033 1.8e-91 340.1 306 64.1
Sc24g0002520 Simmondsia chinensis HOM05D000780 ORTHO05D009033 2.3e-91 339.7 300 64.0
FvH4_6g01461 Fragaria vesca HOM05D000780 ORTHO05D009033 3.0e-91 339.3 306 63.1
GSVIVG01026324001 Vitis vinifera HOM05D000780 ORTHO05D009033 3.9e-91 339.0 298 63.4
CSS0005756 Camellia sinensis var. sinensis HOM05D000780 ORTHO05D009033 8.8e-91 337.8 312 63.5
QL01p042200 Quercus lobata HOM05D000780 ORTHO05D009033 1.5e-90 337.0 316 62.0
Glyma.20G221500 Glycine max HOM05D000780 ORTHO05D009033 2.6e-90 336.3 263 66.2
TAR633G0111 Trochodendron aralioides HOM05D000780 ORTHO05D009033 4.4e-90 335.5 305 63.9
CsaV3_1G045040 Cucumis sativus L. HOM05D000780 ORTHO05D009033 5.7e-90 335.1 305 63.3
Hma1.2p1_0130F.1_g060510 Hydrangea macrophylla HOM05D000780 ORTHO05D009033 5.7e-90 335.1 316 62.3
RcHm_v2.0_Chr3g0449091 Rosa chinensis HOM05D000780 ORTHO05D009033 1.3e-89 334.0 306 61.1
Ah.06g187930 Amaranthus hybridus HOM05D000780 ORTHO05D009033 6.3e-89 331.6 313 61.0
VMungo0720G1285 Vigna mungo HOM05D000780 ORTHO05D009033 1.1e-88 330.9 265 65.7
Ca_09986_v3 Cicer arietinum L. HOM05D000780 ORTHO05D009033 2.4e-88 329.7 311 60.5
Actinidia06831 Actinidia chinensis HOM05D000780 ORTHO05D009033 9.1e-88 327.8 315 61.3
PGR004G1412 Punica granatum HOM05D000780 ORTHO05D009033 9.1e-88 327.8 314 59.9
EL10Ac4g09771 Beta vulgaris HOM05D000780 ORTHO05D009033 3.4e-87 325.9 306 60.5
Phvul.L002032 Phaseolus vulgaris HOM05D000780 ORTHO05D009033 5.9e-87 325.1 263 65.0
Lalb_Chr21g0311301 Lupinus albus HOM05D000780 ORTHO05D009033 2.2e-86 323.2 312 59.0
arahy.Tifrunner.gnm1.ann1.ZAXM00 Arachis hypogaea HOM05D000780 ORTHO05D009033 3.8e-86 322.4 308 59.1
Lj5g0019051 Lotus japonicus HOM05D000780 ORTHO05D009033 5.0e-86 322.0 313 59.4
TWI34G1716 Tripterygium wilfordii HOM05D000780 ORTHO05D009033 1.1e-85 320.9 309 59.2
arahy.Tifrunner.gnm1.ann1.09X96J Arachis hypogaea HOM05D000780 ORTHO05D009033 1.9e-85 320.1 308 58.4
AUR62006989 Chenopodium quinoa HOM05D000780 ORTHO05D009033 3.2e-85 319.3 302 60.9
Psat6g142000 Pisum sativum HOM05D000780 ORTHO05D008187 4.2e-85 318.9 304 59.9
Aqoxy5G00106 Aquilegia oxysepala HOM05D000780 ORTHO05D009033 9.4e-85 317.8 305 60.0
Medtr1g079763 Medicago truncatula HOM05D000780 ORTHO05D009033 1.2e-84 317.4 311 58.8
Nn1g03021 Nelumbo nucifera HOM05D000780 ORTHO05D009033 2.1e-84 316.6 311 59.8
Lsat_1_v5_gn_9_46781 Lactuca sativa HOM05D000780 ORTHO05D009033 4.7e-84 315.5 304 58.9
Nitab4.5_0003148g0030 Nicotiana tabacum HOM05D000780 ORTHO05D009033 8.0e-84 314.7 311 58.8
MSTRG.27431 Avicennia marina HOM05D000780 ORTHO05D009033 2.3e-83 313.2 317 58.4
Solyc04g050470.4 Solanum lycopersicum HOM05D000780 ORTHO05D009033 2.3e-83 313.2 317 58.0
Eucgr.H04210 Eucalyptus grandis HOM05D000780 ORTHO05D009033 1.5e-82 310.5 307 58.3
ClCG03G011490 Citrullus lanatus HOM05D000780 ORTHO05D009033 1.4e-80 303.9 306 58.5
Migut.F02052 Erythranthe guttata HOM05D000780 ORTHO05D009033 3.1e-80 302.8 308 59.7
DCAR_030971 Daucus carota HOM05D000780 ORTHO05D009033 4.1e-80 302.4 301 58.1
ECA232G3479 Erigeron canadensis HOM05D000780 ORTHO05D009033 9.1e-80 301.2 285 61.1
Hund07171 Selenicereus undatus HOM05D000780 ORTHO05D009033 1.6e-79 300.4 305 57.7
MBI10_g26046_MAGBIO Magnolia biondii HOM05D000780 ORTHO05D009033 2.6e-79 299.7 291 59.5
Potri.013G050300 Populus trichocarpa HOM05D000780 ORTHO05D009033 2.6e-79 299.7 268 62.7
Rhsim05G0170400 Rhododendron simsii HOM05D000780 ORTHO05D009033 3.5e-79 299.3 309 56.6
PSO210G3904 Papaver somniferum HOM05D000780 ORTHO05D009033 4.5e-79 298.9 275 61.8
AUR62000636 Chenopodium quinoa HOM05D000780 ORTHO05D008187 2.2e-78 296.6 227 68.3
ATR0088G058 Amborella trichopoda HOM05D000780 ORTHO05D009033 2.9e-78 296.2 249 63.9
CANSAT54G0520 Cannabis sativa HOM05D000780 ORTHO05D009033 2.9e-78 296.2 310 56.5
SalBow1G6873 Salvia bowleyana HOM05D000780 ORTHO05D009033 1.9e-77 293.5 312 56.1
Nitab4.5_0000841g0080 Nicotiana tabacum HOM05D000780 ORTHO05D009033 2.1e-76 290.0 311 56.3
FAN02G1432 Fragaria x ananassa HOM05D000780 ORTHO05D009033 2.7e-76 289.7 309 57.3
FAN05G0905 Fragaria x ananassa HOM05D000780 ORTHO05D001132 3.6e-76 289.3 319 54.2
MELO3C010086.2 Cucumis melo HOM05D000780 ORTHO05D009033 6.1e-76 288.5 272 62.1
FAN14G4937 Fragaria x ananassa HOM05D000780 ORTHO05D001132 8.0e-76 288.1 319 54.9
FAN14G3828 Fragaria x ananassa HOM05D000780 ORTHO05D001132 8.8e-75 284.6 319 54.9
COL.COLO4_15539 Corchorus olitorius HOM05D000780 ORTHO05D008187 1.2e-74 284.3 216 68.5
SGA_v2.0_scaffold329G48830 Striga asiatica HOM05D002740 ORTHO05D003126 5.7e-74 282.0 343 51.0
Prupe.6G353000 Prunus persica HOM05D000780 ORTHO05D009033 1.3e-73 280.8 306 53.6
Dinv01155 Davidia involucrata HOM05D000780 ORTHO05D009033 1.1e-72 277.7 211 68.7
vmacro19978 Vaccinium macrocarpon HOM05D000780 ORTHO05D009033 4.1e-72 275.8 350 49.4
unitig_37.g12284 Utricularia gibba HOM05D000780 ORTHO05D009033 5.3e-72 275.4 297 53.2
SalBow1G5981 Salvia bowleyana HOM05D000780 ORTHO05D009033 9.1e-72 274.6 342 50.9
Glyma.10G167600 Glycine max HOM05D000780 ORTHO05D009033 2.0e-71 273.5 337 50.4
HanXRQChr05g0145151 Helianthus annuus HOM05D000780 ORTHO05D009033 1.7e-70 270.4 257 57.2
Sabra13G0046100 Salix brachista HOM05D000780 ORTHO05D008187 9.4e-69 264.6 229 61.1
Os02g0815400 Oryza sativa ssp. japonica HOM05D000780 ORTHO05D009033 3.6e-68 262.7 257 56.0
TPR.G10273 Trifolium pratense HOM05D000780 ORTHO05D009033 1.4e-67 260.8 320 51.9
Zm00001eb258750 Zea mays HOM05D000780 ORTHO05D009033 3.0e-67 259.6 262 54.2
Peaxi162Scf00077g00138 Petunia axillaris HOM05D000780 ORTHO05D009033 2.6e-66 256.5 224 63.8
Sabra19G0033700 Salix brachista HOM05D000780 ORTHO05D009033 1.3e-65 254.2 310 51.6
Haze_04472 Corylus avellana HOM05D000780 ORTHO05D009033 1.8e-64 250.4 305 53.8
CiPaw.07G074400 Carya illinoinensis HOM05D000780 ORTHO05D009033 1.6e-63 247.3 237 62.4
CSS0024577 Camellia sinensis var. sinensis HOM05D000780 ORTHO05D009033 2.0e-63 246.9 247 59.9
Cpa.g.c33516 Carica papaya HOM05D000780 ORTHO05D009033 1.6e-60 237.3 188 66.5
Oeu001248.1 Olea europaea HOM05D000780 ORTHO05D008187 5.2e-59 232.3 275 52.0
Eucgr.H04100 Eucalyptus grandis HOM05D000780 ORTHO05D009033 9.5e-53 211.5 222 56.3
Lj2A46G68 Lonicera japonica HOM05D000780 ORTHO05D009033 6.4e-49 198.7 149 69.1
Sed0013634 Sechium edule HOM05D000780 ORTHO05D009033 2.4e-48 196.8 325 44.3
AagrBONN_evm.TU.Sc2ySwM_228.3981 Anthoceros agrestis HOM05D000780 ORTHO05D009033 1.2e-47 194.5 251 42.2
SMO172G0144 Selaginella moellendorffii HOM05D000780 ORTHO05D009033 1.3e-46 191.0 211 47.9
MD12G1251000 Malus domestica HOM05D000072 ORTHO05D009033 3.0e-46 189.9 192 58.3
Pp3c18_1300 Physcomitrium patens HOM05D000780 ORTHO05D009033 9.8e-42 174.9 260 38.5
MD12G1250900 Malus domestica HOM05D000780 ORTHO05D009033 1.2e-39 167.9 159 62.3
Sopen04g021250 Solanum pennellii HOM05D000780 ORTHO05D009033 8.6e-38 161.8 135 65.9
CBR_g11120 Chara braunii HOM05D000780 ORTHO05D009033 6.2e-36 155.6 253 36.8
HPP92_009056 Vanilla planifolia HOM05D001254 ORTHO05D001386 1.1e-35 154.8 143 55.9
Cc09_g03030 Coffea canephora HOM05D000780 ORTHO05D009033 3.2e-32 143.3 120 63.3
PGSC0003DMG402028709 Solanum tuberosum HOM05D000780 ORTHO05D009033 1.6e-31 141.0 120 65.0
FAN09G0636 Fragaria x ananassa HOM05D000780 ORTHO05D001132 3.0e-30 136.7 115 61.7
HPP92_009057 Vanilla planifolia HOM05D000780 ORTHO05D009033 3.0e-30 136.7 121 61.2
SEGI_21696 Sequoiadendron giganteum HOM05D000780 ORTHO05D009033 1.1e-29 134.8 152 48.7
Cc09_g03040 Coffea canephora HOM05D000780 ORTHO05D009033 1.8e-27 127.5 165 49.7
SEGI_05244 Sequoiadendron giganteum HOM05D000780 ORTHO05D009033 2.4e-27 127.1 117 57.3
FAN11G0130 Fragaria x ananassa HOM05D000780 ORTHO05D009033 1.5e-26 124.4 235 40.9
Eucgr.H04102 Eucalyptus grandis HOM05D000780 ORTHO05D009033 1.4e-24 117.9 212 39.6
FAN05G5022 Fragaria x ananassa HOM05D000780 ORTHO05D009033 3.8e-17 93.2 113 54.0
CAN.G4.37 Capsicum annuum HOM05D000780 ORTHO05D009033 5.6e-13 79.3 119 49.6
PGSC0003DMG401028709 Solanum tuberosum HOM05D000780 ORTHO05D009033 3.6e-12 76.6 112 47.3
FvH4_3g18300 Fragaria vesca HOM05D000780 ORTHO05D196851 4.9e-09 66.2 42 69.0
FAN14G1321 Fragaria x ananassa HOM05D000780 ORTHO05D009033 1.2e-07 61.6 135 34.1
FAN18G1636 Fragaria x ananassa HOM05D000780 ORTHO05D009033 2.3e-06 57.4 63 55.6


User provided reference genes

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