Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT5G37010 Arabidopsis thaliana HOM05D003795 ORTHO05D004308 1.5e-302 1042.3 638 100.0
AL7G45860 Arabidopsis lyrata HOM05D003795 ORTHO05D004308 6.5e-266 920.6 640 92.7
CARHR216000 Cardamine hirsuta HOM05D003795 ORTHO05D004308 4.4e-214 748.4 652 71.8
Carub.0007s3228 Capsella rubella HOM05D003795 ORTHO05D004308 5.6e-201 704.9 654 78.1
Sp7g05490 Schrenkiella parvula HOM05D003795 ORTHO05D004308 3.5e-195 685.6 674 73.1
Thhalv10018248m.g Eutrema salsugineum HOM05D003795 ORTHO05D004308 5.5e-188 661.8 668 73.2
BolC4t25981H Brassica oleracea HOM05D003795 ORTHO05D004308 2.0e-166 590.1 656 70.1
BcaC02g09547 Brassica carinata HOM05D003795 ORTHO05D004308 2.7e-163 579.7 673 68.5
C04p43990 Brassica napus HOM05D003795 ORTHO05D004308 3.9e-162 575.9 668 68.7
Aa31LG2G10060 Aethionema arabicum HOM05D003795 ORTHO05D004308 6.5e-157 558.5 699 65.5
BcaB06g27061 Brassica carinata HOM05D003795 ORTHO05D004308 2.4e-143 513.5 662 56.5
THA.LOC104805668 Tarenaya hassleriana HOM05D003795 ORTHO05D004308 2.9e-141 506.5 707 59.3
A04p10490 Brassica napus HOM05D003795 ORTHO05D004308 3.7e-128 463.0 656 62.3
Aa31LG9G17690 Aethionema arabicum HOM05D003795 ORTHO05D004308 9.2e-127 458.4 686 58.7
AL6G17260 Arabidopsis lyrata HOM05D003795 ORTHO05D004308 4.3e-76 290.0 262 68.3
TWI74G0163 Tripterygium wilfordii HOM05D003795 ORTHO05D004308 2.3e-69 267.7 728 44.2
CARHR057540 Cardamine hirsuta HOM05D003795 ORTHO05D004308 4.3e-68 263.5 570 49.5
Sp5g20650 Schrenkiella parvula HOM05D003795 ORTHO05D004308 7.4e-68 262.7 583 46.5
AL2G22840 Arabidopsis lyrata HOM05D003795 ORTHO05D004308 3.7e-67 260.4 569 48.5
TWI77G0024 Tripterygium wilfordii HOM05D003795 ORTHO05D004308 6.9e-66 256.1 728 43.1
Potri.012G145200 Populus trichocarpa HOM05D003795 ORTHO05D004308 3.4e-65 253.8 733 39.7
Manes.01G125700 Manihot esculenta HOM05D003795 ORTHO05D004308 4.5e-65 253.4 699 39.2
Sabra12G0109200 Salix brachista HOM05D003795 ORTHO05D004308 1.0e-64 252.3 587 42.9
Thhalv10018468m.g Eutrema salsugineum HOM05D003795 ORTHO05D004308 2.9e-64 250.8 580 46.0
AT1G65710 Arabidopsis thaliana HOM05D003795 ORTHO05D004308 4.9e-64 250.0 574 46.5
Cpa.g.sc108.20 Carica papaya HOM05D003795 ORTHO05D004308 1.1e-63 248.8 714 42.0
Haze_14040 Corylus avellana HOM05D003795 ORTHO05D004308 4.2e-63 246.9 755 40.1
Thecc.04G056400 Theobroma cacao HOM05D003795 ORTHO05D004308 1.6e-62 245.0 696 38.8
Gohir.A11G170300 Gossypium hirsutum HOM05D003795 ORTHO05D004308 6.1e-62 243.0 686 41.4
Manes.02G083300 Manihot esculenta HOM05D003795 ORTHO05D004308 3.0e-61 240.7 670 39.9
Duzib138G1939 Durio zibethinus HOM05D003795 ORTHO05D004308 3.9e-61 240.4 696 38.1
CSS0049356 Camellia sinensis var. sinensis HOM05D003795 ORTHO05D004308 7.4e-60 236.1 751 42.6
Potri.015G147900 Populus trichocarpa HOM05D003795 ORTHO05D004308 1.6e-59 235.0 774 41.5
Gohir.D11G177300 Gossypium hirsutum HOM05D003795 ORTHO05D004308 9.0e-58 229.2 677 39.9
Phvul.006G083400 Phaseolus vulgaris HOM05D003795 ORTHO05D004308 4.5e-57 226.9 697 42.9
Sabra15G0156700 Salix brachista HOM05D003795 ORTHO05D004308 7.7e-57 226.1 718 39.3
VMungo0647G0124 Vigna mungo HOM05D003795 ORTHO05D004308 1.0e-56 225.7 718 35.5
Phvul.008G243000 Phaseolus vulgaris HOM05D003795 ORTHO05D004308 5.0e-56 223.4 715 35.0
QL02p056567 Quercus lobata HOM05D003795 ORTHO05D004308 1.4e-55 221.9 781 38.2
DCAR_014135 Daucus carota HOM05D003795 ORTHO05D004308 3.2e-55 220.7 691 41.2
Lj2A509T28 Lonicera japonica HOM05D003795 ORTHO05D004308 3.2e-55 220.7 743 40.9
CiPaw.03G010000 Carya illinoinensis HOM05D003795 ORTHO05D004308 9.4e-55 219.2 791 39.1
Dinv28269 Davidia involucrata HOM05D003795 ORTHO05D004308 9.4e-55 219.2 759 39.7
Peaxi162Scf00344g00199 Petunia axillaris HOM05D003795 ORTHO05D004308 7.9e-54 216.1 665 38.8
Carub.0002s1153 Capsella rubella HOM05D003795 ORTHO05D004308 1.0e-53 215.7 572 40.2
Glyma.11G202800 Glycine max HOM05D003795 ORTHO05D004308 1.4e-53 215.3 746 38.2
Gorai.007G189400 Gossypium raimondii HOM05D003795 ORTHO05D004308 2.3e-53 214.5 678 40.1
LjContig00141g0025814 Lotus japonicus HOM05D003795 ORTHO05D004308 3.9e-53 213.8 755 37.6
CANSAT78G1023 Cannabis sativa HOM05D003795 ORTHO05D004308 5.1e-53 213.4 738 41.7
COL.COLO4_13440 Corchorus olitorius HOM05D003795 ORTHO05D004308 5.1e-53 213.4 554 39.4
VMungo0540G0009 Vigna mungo HOM05D003795 ORTHO05D004308 1.5e-52 211.8 713 40.8
arahy.Tifrunner.gnm1.ann1.SLU9BZ Arachis hypogaea HOM05D003795 ORTHO05D004308 2.5e-52 211.1 774 36.8
FvH4_5g39710 Fragaria vesca HOM05D003795 ORTHO05D004308 5.7e-52 209.9 689 35.8
QL02p055515 Quercus lobata HOM05D003795 ORTHO05D004308 9.7e-52 209.1 781 38.4
RcHm_v2.0_Chr7g0242011 Rosa chinensis HOM05D003795 ORTHO05D004308 9.7e-52 209.1 709 39.4
FAN08G2134 Fragaria x ananassa HOM05D003795 ORTHO05D004308 1.3e-51 208.8 689 35.7
Glyma.14G207900 Glycine max HOM05D003795 ORTHO05D004308 2.2e-51 208.0 744 35.8
FAN18G0662 Fragaria x ananassa HOM05D003795 ORTHO05D004308 3.7e-51 207.2 689 35.7
FAN18G1276 Fragaria x ananassa HOM05D003795 ORTHO05D004308 3.7e-51 207.2 689 35.7
Rhsim10G0186600 Rhododendron simsii HOM05D003795 ORTHO05D004308 1.2e-49 202.2 653 42.6
Sed0021341 Sechium edule HOM05D003795 ORTHO05D004308 2.0e-49 201.4 698 36.1
vmacro20445 Vaccinium macrocarpon HOM05D003795 ORTHO05D004308 2.6e-49 201.1 723 41.6
Ca_05735_v3 Cicer arietinum L. HOM05D003795 ORTHO05D004308 3.4e-49 200.7 646 40.1
Ca_15099_v3 Cicer arietinum L. HOM05D003795 ORTHO05D004308 3.4e-49 200.7 657 39.3
CAN.G809.93 Capsicum annuum HOM05D003795 ORTHO05D004308 7.7e-49 199.5 750 38.4
PGSC0003DMG400019727 Solanum tuberosum HOM05D003795 ORTHO05D004308 7.7e-49 199.5 704 36.1
arahy.Tifrunner.gnm1.ann1.686QXT Arachis hypogaea HOM05D003795 ORTHO05D004308 1.0e-48 199.1 761 36.5
HanXRQChr14g0443551 Helianthus annuus HOM05D003795 ORTHO05D004308 1.3e-48 198.7 629 36.1
SalBow5G4136 Salvia bowleyana HOM05D003795 ORTHO05D004308 2.2e-48 198.0 567 42.0
Ciclev10011149m.g Citrus clementina HOM05D003795 ORTHO05D004308 2.9e-48 197.6 722 38.9
FAN04G0804 Fragaria x ananassa HOM05D003795 ORTHO05D004308 5.0e-48 196.8 668 35.8
Lsat_1_v5_gn_2_72041 Lactuca sativa HOM05D003795 ORTHO05D004308 5.0e-48 196.8 669 42.8
Oeu012502.2 Olea europaea HOM05D003795 ORTHO05D004308 6.5e-48 196.4 690 35.9
MSTRG.15619 Avicennia marina HOM05D003795 ORTHO05D004308 8.5e-48 196.1 700 40.0
Lalb_Chr18g0053951 Lupinus albus HOM05D003795 ORTHO05D004308 1.9e-47 194.9 646 34.1
Glyma.18G048000 Glycine max HOM05D003795 ORTHO05D004308 9.4e-47 192.6 692 39.6
Psat2g048640 Pisum sativum HOM05D003795 ORTHO05D004308 9.4e-47 192.6 622 35.9
Cc07_g12620 Coffea canephora HOM05D003795 ORTHO05D004308 3.6e-46 190.7 756 40.5
CsaV3_5G024360 Cucumis sativus L. HOM05D003795 ORTHO05D004308 3.6e-46 190.7 727 36.9
Sopen02g026080 Solanum pennellii HOM05D003795 ORTHO05D004308 6.1e-46 189.9 706 37.4
Solyc02g081440.4 Solanum lycopersicum HOM05D003795 ORTHO05D004308 7.9e-46 189.5 709 38.5
Hund22224 Selenicereus undatus HOM05D003795 ORTHO05D004308 1.0e-45 189.1 712 43.1
Medtr5g076140 Medicago truncatula HOM05D003795 ORTHO05D004308 1.4e-45 188.7 632 37.8
Nitab4.5_0000483g0170 Nicotiana tabacum HOM05D003795 ORTHO05D004308 2.3e-45 188.0 752 34.4
ClCG01G008410 Citrullus lanatus HOM05D003795 ORTHO05D004308 5.7e-44 183.3 757 35.7
Nitab4.5_0012787g0030 Nicotiana tabacum HOM05D003795 ORTHO05D004308 5.7e-44 183.3 687 34.5
Ah.06g191370 Amaranthus hybridus HOM05D003795 ORTHO05D004308 9.7e-44 182.6 761 35.6
Oeu060824.1 Olea europaea HOM05D003795 ORTHO05D004308 1.7e-43 181.8 573 39.1
PSO782G2347 Papaver somniferum HOM05D003795 ORTHO05D004308 2.2e-43 181.4 646 38.5
TPR.G15394 Trifolium pratense HOM05D003795 ORTHO05D004308 2.8e-43 181.0 692 35.8
PSO063G2224 Papaver somniferum HOM05D003795 ORTHO05D004308 8.2e-43 179.5 631 36.0
A08p00830 Brassica napus HOM05D003795 ORTHO05D004308 2.4e-42 177.9 568 38.6
GSVIVG01033197001 Vitis vinifera HOM05D003795 ORTHO05D004308 7.0e-42 176.4 707 33.1
MELO3C025107.2 Cucumis melo HOM05D003795 ORTHO05D004308 1.5e-41 175.3 762 33.5
Medtr3g063210 Medicago truncatula HOM05D003795 ORTHO05D004308 2.6e-41 174.5 680 35.1
Nn4g24995 Nelumbo nucifera HOM05D003795 ORTHO05D004308 2.6e-41 174.5 674 35.6
SGA_v2.0_scaffold199G41250 Striga asiatica HOM05D003795 ORTHO05D004308 2.6e-41 174.5 696 36.9
Ah.04g162800 Amaranthus hybridus HOM05D003795 ORTHO05D004308 3.5e-41 174.1 706 33.6
MSTRG.3665 Avicennia marina HOM05D003795 ORTHO05D004308 3.5e-41 174.1 721 40.2
Migut.K01203 Erythranthe guttata HOM05D003795 ORTHO05D004308 2.2e-40 171.4 659 39.0
MD12G1074700 Malus domestica HOM05D003795 ORTHO05D004308 5.0e-40 170.2 663 34.4
BcaC01g01477 Brassica carinata HOM05D003795 ORTHO05D004308 8.5e-40 169.5 564 39.2
C03p92420 Brassica napus HOM05D003795 ORTHO05D004308 8.5e-40 169.5 564 39.2
ECA238G3337 Erigeron canadensis HOM05D003795 ORTHO05D004308 4.2e-39 167.2 620 41.0
BolC3t21550H Brassica oleracea HOM05D003795 ORTHO05D004308 5.5e-39 166.8 554 40.1
Lj6g0018352 Lotus japonicus HOM05D003795 ORTHO05D004308 3.6e-38 164.1 694 35.6
Nn4g24993 Nelumbo nucifera HOM05D003795 ORTHO05D004308 3.6e-38 164.1 461 34.7
BcaB05g24123 Brassica carinata HOM05D003795 ORTHO05D004308 6.1e-38 163.3 398 39.7
Oeu041416.1 Olea europaea HOM05D003795 ORTHO05D004308 1.0e-37 162.5 637 32.7
Glyma.02G239000 Glycine max HOM05D003795 ORTHO05D004308 3.9e-37 160.6 713 30.9
EL10Ac4g08850 Beta vulgaris HOM05D003795 ORTHO05D004308 2.6e-36 157.9 725 39.2
Sabra16G0322500 Salix brachista HOM05D003795 ORTHO05D004308 7.4e-36 156.4 334 41.9
Eucgr.J01649 Eucalyptus grandis HOM05D003795 ORTHO05D004308 1.3e-35 155.6 439 38.3
TPR.G37433 Trifolium pratense HOM05D003795 ORTHO05D004308 1.3e-35 155.6 646 34.4
Psat5g144840 Pisum sativum HOM05D003795 ORTHO05D004308 2.8e-35 154.5 570 35.6
unitig_0.g1678 Utricularia gibba HOM05D003795 ORTHO05D004308 2.8e-35 154.5 593 32.4
BcaB04g16989 Brassica carinata HOM05D003795 ORTHO05D004308 2.4e-34 151.4 566 39.8
BraA08t32141Z Brassica rapa HOM05D003795 ORTHO05D004308 3.1e-34 151.0 558 44.1
Atru.chr1.2190 Acer truncatum HOM05D003795 ORTHO05D004308 5.3e-34 150.2 642 37.4
PGR042G3398 Punica granatum HOM05D003795 ORTHO05D004308 4.5e-33 147.1 686 30.0
Os04g0528600 Oryza sativa ssp. japonica HOM05D003795 ORTHO05D004308 1.7e-32 145.2 606 33.7
HanXRQChr12g0365641 Helianthus annuus HOM05D003795 ORTHO05D004308 2.2e-32 144.8 606 32.3
Peaxi162Scf00784g00029 Petunia axillaris HOM05D003795 ORTHO05D004308 1.5e-31 142.1 616 36.7
unitig_748.g7017 Utricularia gibba HOM05D003795 ORTHO05D004308 5.5e-31 140.2 649 31.6
Hma1.2p1_0034F.1_g021500 Hydrangea macrophylla HOM05D003795 ORTHO05D004308 6.1e-30 136.7 785 34.8
Sc20g0000860 Simmondsia chinensis HOM05D003795 ORTHO05D004308 1.8e-29 135.2 794 32.6
Hma1.2p1_0085F.1_g043870 Hydrangea macrophylla HOM05D003795 ORTHO05D004308 8.8e-29 132.9 773 35.7
CAN.G304.8 Capsicum annuum HOM05D003795 ORTHO05D004308 3.4e-28 131.0 562 32.9
Dinv19094 Davidia involucrata HOM05D003795 ORTHO05D004308 1.7e-27 128.6 320 39.7
PGSC0003DMG400021472 Solanum tuberosum HOM05D003795 ORTHO05D004308 1.7e-27 128.6 626 32.4
Zm00001eb427110 Zea mays HOM05D003795 ORTHO05D004308 8.3e-27 126.3 661 29.7
unitig_748.g8624 Utricularia gibba HOM05D003795 ORTHO05D004308 1.8e-26 125.2 613 30.3
Nitab4.5_0008083g0010 Nicotiana tabacum HOM05D003795 ORTHO05D004308 4.1e-26 124.0 657 31.2
Sopen02g011820 Solanum pennellii HOM05D003795 ORTHO05D004308 4.1e-26 124.0 646 32.2
PGSC0003DMG402019715 Solanum tuberosum HOM05D003795 ORTHO05D004308 2.0e-25 121.7 277 39.4
Nitab4.5_0002297g0070 Nicotiana tabacum HOM05D003795 ORTHO05D004308 7.7e-25 119.8 667 30.9
MBI06_g17214_MAGBIO Magnolia biondii HOM05D003795 ORTHO05D004308 1.0e-24 119.4 609 29.9
Aqoxy3G04352 Aquilegia oxysepala HOM05D003795 ORTHO05D004308 1.3e-24 119.0 642 31.8
Solyc02g036460.3 Solanum lycopersicum HOM05D003795 ORTHO05D004308 6.5e-24 116.7 638 31.3
Zm00001eb075920 Zea mays HOM05D003795 ORTHO05D004308 6.5e-24 116.7 525 30.3
TAR629G1700 Trochodendron aralioides HOM05D003795 ORTHO05D004308 1.9e-23 115.2 443 35.4
Zm00001eb185660 Zea mays HOM05D003795 ORTHO05D004308 2.5e-23 114.8 516 30.0
HPP92_013140 Vanilla planifolia HOM05D003795 ORTHO05D004308 7.2e-23 113.2 619 30.0
Aa31LG1G18520 Aethionema arabicum HOM05D003795 ORTHO05D026452 1.6e-22 112.1 119 63.0
VMungo1215G2457 Vigna mungo HOM05D003795 ORTHO05D004308 1.5e-20 105.5 302 35.1
Actinidia32996 Actinidia chinensis HOM05D003795 ORTHO05D004308 2.6e-20 104.8 406 46.8
AUR62017269 Chenopodium quinoa HOM05D003795 ORTHO05D004308 1.8e-18 98.6 715 27.4
Aa31LG1G18490 Aethionema arabicum HOM05D003795 ORTHO05D004308 1.2e-17 95.9 61 83.6
Actinidia22883 Actinidia chinensis HOM05D003795 ORTHO05D004308 4.5e-17 94.0 664 33.7
Aqoxy2G03712 Aquilegia oxysepala HOM05D003795 ORTHO05D004308 1.0e-16 92.8 326 30.1
BcaB04g20778 Brassica carinata HOM05D011073 ORTHO05D013800 5.0e-16 90.5 170 48.8
Lalb_Chr10g0103891 Lupinus albus HOM05D003795 ORTHO05D004308 1.1e-15 89.4 403 40.2
A05p19800 Brassica napus HOM05D011073 ORTHO05D013800 5.5e-15 87.0 244 53.7
C03p77490 Brassica napus HOM05D011073 ORTHO05D013800 7.2e-15 86.7 82 73.2
BraA02t06724Z Brassica rapa HOM05D011073 ORTHO05D013800 7.2e-15 86.7 82 73.2
AUR62010625 Chenopodium quinoa HOM05D003795 ORTHO05D004308 1.6e-14 85.5 200 41.5
BraA06t25267Z Brassica rapa HOM05D003795 ORTHO05D026452 4.7e-14 84.0 82 62.2
BraA05t20886Z Brassica rapa HOM05D003089 ORTHO05D001766 8.0e-14 83.2 240 54.2
CDE04G0398 Ceratophyllum demersum HOM05D003795 ORTHO05D004308 1.4e-13 82.4 755 26.1
A06p21800 Brassica napus HOM05D003795 ORTHO05D026452 3.0e-13 81.3 82 61.0
CDE08G0767 Ceratophyllum demersum HOM05D003795 ORTHO05D004308 3.0e-13 81.3 641 27.0
C03p10570 Brassica napus HOM05D011073 ORTHO05D013800 6.8e-13 80.1 81 70.4
BcaB07g34060 Brassica carinata HOM05D003795 ORTHO05D004308 2.6e-12 78.2 78 65.4
Prupe.7G058700 Prunus persica HOM05D003795 ORTHO05D004308 1.7e-11 75.5 330 41.8
BolC4t22963H Brassica oleracea HOM05D011073 ORTHO05D013800 2.8e-11 74.7 76 69.7
Prupe.7G058800 Prunus persica HOM05D003795 ORTHO05D004308 8.3e-11 73.2 124 44.4
BolC9t54509H Brassica oleracea HOM05D011073 ORTHO05D013800 1.8e-10 72.0 76 68.4
VMungo1383G0923 Vigna mungo HOM05D003795 ORTHO05D004308 2.4e-10 71.6 104 46.2
Lsat_1_v5_gn_8_114961 Lactuca sativa HOM05D003795 ORTHO05D004308 4.1e-10 70.9 497 36.6
Peaxi162Scf00116g00915 Petunia axillaris HOM05D004744 ORTHO05D005655 9.2e-10 69.7 186 34.9
Sabra16G0322400 Salix brachista HOM05D003795 ORTHO05D004308 2.0e-09 68.6 80 53.8
Lalb_Chr10g0103871 Lupinus albus HOM05D003795 ORTHO05D004308 2.9e-08 64.7 101 48.5
AUR62010626 Chenopodium quinoa HOM05D003795 ORTHO05D004308 1.5e-07 62.4 202 35.6
HanXRQChr09g0258951 Helianthus annuus HOM05D003795 ORTHO05D004308 2.5e-07 61.6 274 29.6
BcaC04g22717 Brassica carinata HOM05D011073 ORTHO05D013800 4.3e-07 60.8 52 71.2
Os02g0638200 Oryza sativa ssp. japonica HOM05D003795 ORTHO05D004308 4.3e-07 60.8 156 36.5
MD14G1072800 Malus domestica HOM05D003795 ORTHO05D004308 5.6e-07 60.5 91 45.1
TAR629G2443 Trochodendron aralioides HOM05D003795 ORTHO05D004308 2.8e-06 58.2 97 43.3


User provided reference genes

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