Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT5G36722 Arabidopsis thaliana HOM05D003115 ORTHO05D038785 1.5e-26 122.1 63 100.0
AT5G36810 Arabidopsis thaliana HOM05D003115 ORTHO05D038785 1.5e-26 122.1 63 100.0
COL.COLO4_20215 Corchorus olitorius HOM05D003115 ORTHO05D003595 4.5e-10 67.4 58 69.0
COL.COLO4_33741 Corchorus olitorius HOM05D003115 ORTHO05D003595 5.9e-10 67.0 58 67.2
Thhalv10024182m.g Eutrema salsugineum HOM05D003115 ORTHO05D003595 7.7e-10 66.6 58 70.7
Carub.0007s0955 Capsella rubella HOM05D003115 ORTHO05D003595 1.0e-09 66.2 58 67.2
Thecc.04G196300 Theobroma cacao HOM05D003115 ORTHO05D003595 2.2e-09 65.1 58 65.5
Cfa009508 Carpinus fangiana HOM05D003115 ORTHO05D003595 3.8e-09 64.3 58 65.5
Haze_07641 Corylus avellana HOM05D003115 ORTHO05D003595 3.8e-09 64.3 58 65.5
Duzib212G0201 Durio zibethinus HOM05D003115 ORTHO05D003595 3.8e-09 64.3 58 65.5
Ciclev10004117m.g Citrus clementina HOM05D003115 ORTHO05D003595 5.0e-09 63.9 58 65.5
Atru.chr10.1944 Acer truncatum HOM05D003115 ORTHO05D003595 6.5e-09 63.5 58 65.5
Atru.chr4.1597 Acer truncatum HOM05D003115 ORTHO05D003595 6.5e-09 63.5 58 65.5
arahy.Tifrunner.gnm1.ann1.QS081X Arachis hypogaea HOM05D003115 ORTHO05D003595 8.5e-09 63.2 58 62.1
TWI56G0473 Tripterygium wilfordii HOM05D003115 ORTHO05D003595 8.5e-09 63.2 58 60.3
arahy.Tifrunner.gnm1.ann1.01WSAY Arachis hypogaea HOM05D003115 ORTHO05D003595 1.1e-08 62.8 58 60.3
AL7G21090 Arabidopsis lyrata HOM05D003115 ORTHO05D003595 1.4e-08 62.4 60 61.7
CSS0000754 Camellia sinensis var. sinensis HOM05D003115 ORTHO05D003595 1.4e-08 62.4 58 63.8
CSS0038204 Camellia sinensis var. sinensis HOM05D003115 ORTHO05D003595 1.4e-08 62.4 58 63.8
MELO3C020422.2 Cucumis melo HOM05D003115 ORTHO05D003595 1.4e-08 62.4 58 62.1
CsaV3_2G011790 Cucumis sativus L. HOM05D003115 ORTHO05D003595 1.4e-08 62.4 58 62.1
QL04p081909 Quercus lobata HOM05D003115 ORTHO05D003595 1.9e-08 62.0 58 63.8
Medtr3g083970 Medicago truncatula HOM05D003115 ORTHO05D003595 2.5e-08 61.6 58 63.8
VMungo1383G2293 Vigna mungo HOM05D003115 ORTHO05D003595 2.5e-08 61.6 58 62.1
Dinv16255 Davidia involucrata HOM05D003115 ORTHO05D003595 3.2e-08 61.2 58 63.8
Gohir.A10G128200 Gossypium hirsutum HOM05D003115 ORTHO05D003595 3.2e-08 61.2 55 61.8
Gorai.011G152900 Gossypium raimondii HOM05D003115 ORTHO05D003595 3.2e-08 61.2 55 61.8
Sed0014363 Sechium edule HOM05D003115 ORTHO05D003595 3.2e-08 61.2 58 62.1
GSVIVG01021009001 Vitis vinifera HOM05D003115 ORTHO05D003595 3.2e-08 61.2 58 63.8
Phvul.001G253000 Phaseolus vulgaris HOM05D003115 ORTHO05D003595 4.2e-08 60.8 58 60.3
SalBow3G3081 Salvia bowleyana HOM05D003115 ORTHO05D003595 4.2e-08 60.8 58 63.8
TPR.G14701 Trifolium pratense HOM05D003115 ORTHO05D003595 4.2e-08 60.8 58 62.1
TPR.G31177 Trifolium pratense HOM05D003115 ORTHO05D003595 4.2e-08 60.8 58 62.1
Aqoxy5G00431 Aquilegia oxysepala HOM05D003115 ORTHO05D003595 5.5e-08 60.5 59 62.7
ClCG06G007990 Citrullus lanatus HOM05D003115 ORTHO05D003595 5.5e-08 60.5 58 60.3
Glyma.18G016000 Glycine max HOM05D003115 ORTHO05D003595 5.5e-08 60.5 58 62.1
Manes.15G056200 Manihot esculenta HOM05D003115 ORTHO05D003595 7.2e-08 60.1 58 60.3
Oeu002918.1 Olea europaea HOM05D003115 ORTHO05D003595 7.2e-08 60.1 58 60.3
THA.LOC104808700 Tarenaya hassleriana HOM05D003115 ORTHO05D003595 7.2e-08 60.1 57 70.2
CANSAT78G1406 Cannabis sativa HOM05D003115 ORTHO05D003595 9.4e-08 59.7 58 62.1
AT4G30990 Arabidopsis thaliana HOM05D003115 ORTHO05D003595 1.6e-07 58.9 59 62.7
HanXRQChr17g0546471 Helianthus annuus HOM05D003115 ORTHO05D003595 1.6e-07 58.9 58 60.3
Nn4g23612 Nelumbo nucifera HOM05D003115 ORTHO05D003595 1.6e-07 58.9 58 60.3
Eucgr.H00030 Eucalyptus grandis HOM05D003115 ORTHO05D003595 2.7e-07 58.2 58 55.2
Nitab4.5_0000697g0090 Nicotiana tabacum HOM05D003115 ORTHO05D003595 2.7e-07 58.2 58 58.6
PGR119G1374 Punica granatum HOM05D003115 ORTHO05D003595 2.7e-07 58.2 55 61.8
Lj6g0020396 Lotus japonicus HOM05D003115 ORTHO05D003595 3.6e-07 57.8 58 58.6
TAR636G1491 Trochodendron aralioides HOM05D003115 ORTHO05D003595 3.6e-07 57.8 58 58.6
AL1G41060 Arabidopsis lyrata HOM05D003115 ORTHO05D003595 4.6e-07 57.4 51 62.7
Prupe.3G074200 Prunus persica HOM05D003115 ORTHO05D003595 4.6e-07 57.4 57 52.6
Prupe.3G077100 Prunus persica HOM05D003115 ORTHO05D003595 4.6e-07 57.4 57 54.4
vmacro00444 Vaccinium macrocarpon HOM05D003115 ORTHO05D003595 4.6e-07 57.4 58 58.6
CiPaw.14G076100 Carya illinoinensis HOM05D003115 ORTHO05D003595 6.1e-07 57.0 58 56.9
ECA233G4989 Erigeron canadensis HOM05D003115 ORTHO05D003595 6.1e-07 57.0 58 55.2
MD17G1201300 Malus domestica HOM05D003115 ORTHO05D003595 6.1e-07 57.0 58 55.2
AL1G39310 Arabidopsis lyrata HOM05D003115 ORTHO05D003595 7.9e-07 56.6 52 65.4
Lsat_1_v5_gn_6_59340 Lactuca sativa HOM05D003115 ORTHO05D003595 7.9e-07 56.6 58 58.6
FvH4_6g30710 Fragaria vesca HOM05D003115 ORTHO05D003595 1.0e-06 56.2 55 60.0
FAN14G0460 Fragaria x ananassa HOM05D003115 ORTHO05D003595 1.0e-06 56.2 55 60.0
Nitab4.5_0012127g0010 Nicotiana tabacum HOM05D003115 ORTHO05D003595 1.0e-06 56.2 58 55.2
FAN02G0145 Fragaria x ananassa HOM05D003115 ORTHO05D003595 1.4e-06 55.8 55 60.0
FAN05G1620 Fragaria x ananassa HOM05D003115 ORTHO05D003595 1.4e-06 55.8 55 60.0
DCAR_007830 Daucus carota HOM05D003115 ORTHO05D003595 1.8e-06 55.5 58 56.9
Lalb_Chr23g0269091 Lupinus albus HOM05D003115 ORTHO05D003595 1.8e-06 55.5 58 55.2
Solyc09g092240.3 Solanum lycopersicum HOM05D003115 ORTHO05D003595 1.8e-06 55.5 58 56.9
Sopen09g035170 Solanum pennellii HOM05D003115 ORTHO05D003595 1.8e-06 55.5 58 56.9
unitig_578.g16273 Utricularia gibba HOM05D003115 ORTHO05D003595 1.8e-06 55.5 58 56.9
Carub.0005s0720 Capsella rubella HOM05D003115 ORTHO05D003595 3.9e-06 54.3 58 55.2
RcHm_v2.0_Chr2g0137101 Rosa chinensis HOM05D003115 ORTHO05D003595 3.9e-06 54.3 58 55.2
Sp7g28860 Schrenkiella parvula HOM05D003115 ORTHO05D003595 3.9e-06 54.3 59 57.6
SGA_v2.0_scaffold5G03024 Striga asiatica HOM05D003115 ORTHO05D003595 5.1e-06 53.9 58 58.6
Aa31LG2G19350 Aethionema arabicum HOM05D003115 ORTHO05D003595 6.7e-06 53.5 52 67.3
FAN09G2094 Fragaria x ananassa HOM05D003115 ORTHO05D003595 6.7e-06 53.5 55 58.2


User provided reference genes

Program Settings