Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT5G35520 Arabidopsis thaliana HOM05D006386 ORTHO05D007575 2.3e-123 445.7 239 100.0
AL7G44320 Arabidopsis lyrata HOM05D006386 ORTHO05D007575 1.0e-107 393.7 239 87.0
Carub.0007s3127 Capsella rubella HOM05D006386 ORTHO05D007575 6.5e-94 347.8 245 76.3
CARHR217490 Cardamine hirsuta HOM05D006386 ORTHO05D007575 7.0e-88 327.8 241 73.0
Thhalv10003465m.g Eutrema salsugineum HOM05D006386 ORTHO05D007575 6.6e-78 294.7 240 65.8
Sp7g06840 Schrenkiella parvula HOM05D006386 ORTHO05D007575 1.2e-76 290.4 243 65.0
Aa31LG4G9830 Aethionema arabicum HOM05D006386 ORTHO05D007575 2.0e-74 283.1 242 62.8
BcaB06g26945 Brassica carinata HOM05D006386 ORTHO05D007575 1.4e-72 276.9 239 62.8
THA.LOC104819388 Tarenaya hassleriana HOM05D006386 ORTHO05D007575 6.2e-68 261.5 244 58.2
BcaC02g09476 Brassica carinata HOM05D006386 ORTHO05D007575 1.8e-67 260.0 241 60.6
BolC4t25901H Brassica oleracea HOM05D006386 ORTHO05D007575 8.9e-67 257.7 241 60.2
C04p43230 Brassica napus HOM05D006386 ORTHO05D007575 9.8e-66 254.2 241 60.2
GSVIVG01008195001 Vitis vinifera HOM05D006386 ORTHO05D007575 2.9e-57 226.1 247 49.0
Ciclev10021913m.g Citrus clementina HOM05D006386 ORTHO05D007575 2.7e-55 219.5 247 49.4
BraA04t16635Z Brassica rapa HOM05D006386 ORTHO05D007575 5.1e-54 215.3 244 52.9
COL.COLO4_08656 Corchorus olitorius HOM05D006386 ORTHO05D007575 6.6e-54 214.9 247 49.0
A04p09730 Brassica napus HOM05D006386 ORTHO05D007575 8.6e-54 214.5 239 53.1
FAN08G0928 Fragaria x ananassa HOM05D006386 ORTHO05D007575 8.6e-54 214.5 247 49.0
Gorai.007G040700 Gossypium raimondii HOM05D006386 ORTHO05D007575 8.6e-54 214.5 247 47.4
Duzib068G0691 Durio zibethinus HOM05D006386 ORTHO05D007575 1.1e-53 214.2 247 47.4
Thecc.03G113300 Theobroma cacao HOM05D006386 ORTHO05D007575 1.5e-53 213.8 247 47.8
Gohir.D11G038000 Gossypium hirsutum HOM05D006386 ORTHO05D007575 1.9e-53 213.4 247 47.4
Atru.chr9.671 Acer truncatum HOM05D006386 ORTHO05D007575 4.3e-53 212.2 244 47.1
FAN13G1489 Fragaria x ananassa HOM05D006386 ORTHO05D007575 5.6e-53 211.8 247 48.6
RcHm_v2.0_Chr7g0184161 Rosa chinensis HOM05D006386 ORTHO05D007575 7.3e-53 211.5 247 48.6
CANSAT80G2620 Cannabis sativa HOM05D006386 ORTHO05D007575 2.8e-52 209.5 249 47.4
FvH4_5g13000 Fragaria vesca HOM05D006386 ORTHO05D007575 3.6e-52 209.1 247 48.2
FAN18G3466 Fragaria x ananassa HOM05D006386 ORTHO05D007575 6.2e-52 208.4 247 48.2
Dinv36853 Davidia involucrata HOM05D006386 ORTHO05D007575 1.4e-51 207.2 247 47.0
Gohir.A11G034600 Gossypium hirsutum HOM05D006386 ORTHO05D007575 4.4e-50 202.2 248 45.6
Cfa019518 Carpinus fangiana HOM05D006386 ORTHO05D007575 9.9e-50 201.1 247 46.6
Sed0015508 Sechium edule HOM05D006386 ORTHO05D007575 2.9e-49 199.5 245 48.6
Lj9A435T83 Lonicera japonica HOM05D006386 ORTHO05D007575 3.8e-49 199.1 238 47.1
Actinidia36923 Actinidia chinensis HOM05D006386 ORTHO05D007575 1.9e-48 196.8 251 45.4
QL10p021984 Quercus lobata HOM05D006386 ORTHO05D007575 2.4e-48 196.4 241 45.6
Potri.015G055500 Populus trichocarpa HOM05D006386 ORTHO05D007575 3.2e-48 196.1 246 45.1
Manes.01G023400 Manihot esculenta HOM05D006386 ORTHO05D007575 9.2e-48 194.5 244 43.9
CSS0007083 Camellia sinensis var. sinensis HOM05D006386 ORTHO05D007575 2.7e-47 193.0 251 44.2
CiPaw.16G081700 Carya illinoinensis HOM05D006386 ORTHO05D007575 1.0e-46 191.0 246 43.5
PGSC0003DMG400024511 Solanum tuberosum HOM05D006386 ORTHO05D007575 2.3e-46 189.9 246 43.1
Oeu010193.1 Olea europaea HOM05D006386 ORTHO05D007575 3.0e-46 189.5 243 44.9
TWI81G0025 Tripterygium wilfordii HOM05D006386 ORTHO05D007575 3.9e-46 189.1 246 47.2
SalBow1G4471 Salvia bowleyana HOM05D006386 ORTHO05D007575 5.1e-46 188.7 241 42.7
Eucgr.K02638 Eucalyptus grandis HOM05D006386 ORTHO05D007575 8.7e-46 188.0 246 44.3
Nn3g17620 Nelumbo nucifera HOM05D006386 ORTHO05D007575 1.5e-45 187.2 243 45.7
ClCG06G015230 Citrullus lanatus HOM05D006386 ORTHO05D007575 3.3e-45 186.0 245 45.7
Sabra15G0080700 Salix brachista HOM05D006386 ORTHO05D007575 3.3e-45 186.0 273 40.7
TAR629G0047 Trochodendron aralioides HOM05D002187 ORTHO05D002243 1.6e-44 183.7 190 52.1
MD14G1218500 Malus domestica HOM05D006386 ORTHO05D007575 2.1e-44 183.3 247 44.1
Migut.D01482 Erythranthe guttata HOM05D006386 ORTHO05D007575 6.2e-44 181.8 244 44.7
Sopen03g033610 Solanum pennellii HOM05D006386 ORTHO05D007575 6.2e-44 181.8 246 42.3
Lalb_Chr13g0302571 Lupinus albus HOM05D006386 ORTHO05D007575 3.1e-43 179.5 244 41.8
Hund02537 Selenicereus undatus HOM05D006386 ORTHO05D007575 3.1e-43 179.5 243 43.2
Solyc03g114520.3 Solanum lycopersicum HOM05D006386 ORTHO05D007575 4.0e-43 179.1 222 44.6
Nitab4.5_0004342g0080 Nicotiana tabacum HOM05D006386 ORTHO05D007575 5.2e-43 178.7 246 41.5
Nitab4.5_0000646g0180 Nicotiana tabacum HOM05D006386 ORTHO05D007575 4.4e-42 175.6 246 40.7
Glyma.17G083800 Glycine max HOM05D006386 ORTHO05D007575 7.6e-42 174.9 246 41.9
AUR62032161 Chenopodium quinoa HOM05D006386 ORTHO05D007575 9.9e-42 174.5 243 41.6
Cc04_g07860 Coffea canephora HOM05D006386 ORTHO05D007575 1.3e-41 174.1 238 41.6
VMungo1215G2864 Vigna mungo HOM05D006386 ORTHO05D007575 1.3e-41 174.1 246 41.5
Sc04g0004070 Simmondsia chinensis HOM05D006386 ORTHO05D007575 3.8e-41 172.6 254 42.1
Lj6g0003397 Lotus japonicus HOM05D006386 ORTHO05D007575 1.1e-40 171.0 246 42.3
unitig_62.g23762 Utricularia gibba HOM05D006386 ORTHO05D007575 1.4e-40 170.6 230 43.5
Hma1.2p1_0340F.1_g130200 Hydrangea macrophylla HOM05D006386 ORTHO05D007575 2.4e-40 169.9 244 41.8
vmacro17651 Vaccinium macrocarpon HOM05D006386 ORTHO05D007575 3.2e-40 169.5 180 51.7
Glyma.05G016300 Glycine max HOM05D006386 ORTHO05D007575 4.2e-40 169.1 238 40.8
Phvul.002G142200 Phaseolus vulgaris HOM05D006386 ORTHO05D007575 9.3e-40 167.9 246 40.7
Medtr4g112610 Medicago truncatula HOM05D006386 ORTHO05D007575 2.1e-39 166.8 241 40.7
EL10Ac9g20981 Beta vulgaris HOM05D006386 ORTHO05D007575 2.7e-39 166.4 243 40.7
PGR044G0997 Punica granatum HOM05D006386 ORTHO05D007575 3.5e-39 166.0 208 45.2
Phvul.003G180600 Phaseolus vulgaris HOM05D006386 ORTHO05D007575 4.6e-39 165.6 239 41.0
arahy.Tifrunner.gnm1.ann1.HL5ANR Arachis hypogaea HOM05D006386 ORTHO05D007575 1.3e-38 164.1 210 42.9
HanXRQChr16g0502011 Helianthus annuus HOM05D006386 ORTHO05D007575 3.0e-38 162.9 246 39.4
SGA_v2.0_scaffold42G16024 Striga asiatica HOM05D006386 ORTHO05D007575 6.6e-38 161.8 235 42.6
TPR.G23873 Trifolium pratense HOM05D006386 ORTHO05D007575 6.6e-38 161.8 242 41.3
Ca_21735_v3 Cicer arietinum L. HOM05D006386 ORTHO05D007575 1.1e-37 161.0 243 38.7
arahy.Tifrunner.gnm1.ann1.3Z7JIG Arachis hypogaea HOM05D006386 ORTHO05D007575 1.5e-37 160.6 210 42.4
MSTRG.4502 Avicennia marina HOM05D006386 ORTHO05D007575 1.5e-37 160.6 239 39.3
CDE02G3865 Ceratophyllum demersum HOM05D006386 ORTHO05D007575 5.6e-37 158.7 233 39.9
Medtr4g112830 Medicago truncatula HOM05D006386 ORTHO05D007575 2.1e-36 156.8 244 39.3
PSO017G3209 Papaver somniferum HOM05D006386 ORTHO05D007575 2.8e-36 156.4 224 37.9
PSO478G3500 Papaver somniferum HOM05D006386 ORTHO05D007575 3.6e-36 156.0 224 37.9
Lsat_1_v5_gn_4_112761 Lactuca sativa HOM05D006386 ORTHO05D007575 9.0e-35 151.4 214 40.2
SHI18989 Sapria himalayana HOM05D006386 ORTHO05D007575 2.6e-34 149.8 181 44.8
Peaxi162Scf00119g00118 Petunia axillaris HOM05D006386 ORTHO05D007575 7.6e-34 148.3 252 39.3
Lsat_1_v5_gn_4_112801 Lactuca sativa HOM05D006386 ORTHO05D007575 1.3e-33 147.5 209 39.7
Prupe.5G212600 Prunus persica HOM05D006386 ORTHO05D007575 1.3e-33 147.5 241 41.1
arahy.Tifrunner.gnm1.ann1.X9R15Y Arachis hypogaea HOM05D006386 ORTHO05D007575 1.1e-32 144.4 259 37.5
CsaV3_1G003130 Cucumis sativus L. HOM05D006386 ORTHO05D007575 2.4e-32 143.3 248 39.1
ECA246G4419 Erigeron canadensis HOM05D006386 ORTHO05D007575 7.1e-32 141.7 241 36.5
ATR0730G046 Amborella trichopoda HOM05D006386 ORTHO05D007575 1.0e-30 137.9 236 36.9
MSTRG.4503 Avicennia marina HOM05D006386 ORTHO05D007575 1.3e-30 137.5 177 41.8
Aqoxy6G00629 Aquilegia oxysepala HOM05D006386 ORTHO05D007575 5.1e-30 135.6 242 36.4
Actinidia33576 Actinidia chinensis HOM05D006386 ORTHO05D007575 1.5e-29 134.0 266 36.5
MBI10_g16789_MAGBIO Magnolia biondii HOM05D006386 ORTHO05D007575 5.6e-29 132.1 173 44.5
ECA232G1078 Erigeron canadensis HOM05D006386 ORTHO05D007575 8.1e-28 128.3 214 35.5
Psat4g044400 Pisum sativum HOM05D006386 ORTHO05D007575 8.1e-28 128.3 249 36.9
HPP92_015441 Vanilla planifolia HOM05D006386 ORTHO05D007575 5.3e-27 125.6 209 38.3
MD06G1208100 Malus domestica HOM05D006386 ORTHO05D007575 3.5e-23 112.8 195 37.9
Aqoxy3G00630 Aquilegia oxysepala HOM05D006386 ORTHO05D007575 6.0e-23 112.1 246 33.3
Nitab4.5_0005402g0030 Nicotiana tabacum HOM05D002295 ORTHO05D007575 3.9e-22 109.4 237 33.3
arahy.Tifrunner.gnm1.ann1.7DA3AY Arachis hypogaea HOM05D006386 ORTHO05D007575 4.3e-21 105.9 245 32.7
Cpa.g.sc53.22 Carica papaya HOM05D006386 ORTHO05D007575 5.6e-21 105.5 145 46.2
CAN.G982.14 Capsicum annuum HOM05D006386 ORTHO05D007575 6.2e-20 102.1 139 43.9
Zm00001eb433940 Zea mays HOM05D006386 ORTHO05D007575 2.9e-17 93.2 200 30.5
Cpa.g.sc53.23 Carica papaya HOM05D006386 ORTHO05D007575 5.5e-16 89.0 78 53.8
TWI81G0622 Tripterygium wilfordii HOM05D006386 ORTHO05D007575 7.1e-16 88.6 147 41.5
Os02g0620100 Oryza sativa ssp. japonica HOM05D006386 ORTHO05D007575 8.7e-14 81.6 238 24.8
Zm00001eb065850 Zea mays HOM05D006386 ORTHO05D007575 2.5e-13 80.1 200 28.5
MELO3C028557.2 Cucumis melo HOM05D006386 ORTHO05D007575 4.3e-13 79.3 60 61.7
AUR62036917 Chenopodium quinoa HOM05D006386 ORTHO05D007575 3.7e-12 76.3 134 35.1
Actinidia27067 Actinidia chinensis HOM05D006386 ORTHO05D007575 1.8e-11 73.9 54 61.1
Rhsim08G0139600 Rhododendron simsii HOM05D006386 ORTHO05D007575 6.5e-09 65.5 39 74.4
DCAR_029598 Daucus carota HOM05D006386 ORTHO05D007575 7.2e-08 62.0 130 34.6
Mapoly0051s0086 Marchantia polymorpha HOM05D006386 ORTHO05D007575 1.8e-06 57.4 190 27.9
COL.COLO4_24165 Corchorus olitorius HOM05D006386 ORTHO05D007575 8.8e-06 55.1 64 50.0


User provided reference genes

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