Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT5G35405 Arabidopsis thaliana HOM05D007923 ORTHO05D009651 4.0e-81 304.7 150 100.0
AT4G13261 Arabidopsis thaliana HOM05D007923 ORTHO05D009651 2.8e-74 282.0 150 91.3
AT4G13263 Arabidopsis thaliana HOM05D007923 ORTHO05D009651 3.4e-72 275.0 150 88.7
AL9U10560 Arabidopsis lyrata HOM05D007923 ORTHO05D009651 4.4e-72 274.6 149 89.3
AT3G11990 Arabidopsis thaliana HOM05D007923 ORTHO05D009651 3.9e-52 208.4 171 63.2
AT1G45190 Arabidopsis thaliana HOM05D007923 ORTHO05D009651 6.6e-52 207.6 171 63.7
AT1G47470 Arabidopsis thaliana HOM05D007923 ORTHO05D009651 2.5e-51 205.7 172 64.5
AL3G23600 Arabidopsis lyrata HOM05D007923 ORTHO05D009651 4.3e-51 204.9 172 64.5
AL1G53940 Arabidopsis lyrata HOM05D007923 ORTHO05D009651 2.4e-49 199.1 152 63.8
Carub.0008s0480 Capsella rubella HOM05D007923 ORTHO05D009651 8.4e-47 190.7 171 59.6
Sp3g10220 Schrenkiella parvula HOM05D007923 ORTHO05D009651 8.7e-44 180.6 173 59.0
AL5G13890 Arabidopsis lyrata HOM05D007923 ORTHO05D009651 3.3e-43 178.7 158 58.9
AL5G13880 Arabidopsis lyrata HOM05D007923 ORTHO05D009651 1.6e-42 176.4 158 58.2
AT2G04031 Arabidopsis thaliana HOM05D007923 ORTHO05D009651 2.1e-42 176.0 152 60.5
CARHR086550 Cardamine hirsuta HOM05D007923 ORTHO05D009651 3.6e-42 175.3 173 54.9
AT2G04041 Arabidopsis thaliana HOM05D007923 ORTHO05D009651 6.2e-42 174.5 152 59.9
AT2G04037 Arabidopsis thaliana HOM05D007923 ORTHO05D009651 8.1e-42 174.1 158 58.9
AL5G13870 Arabidopsis lyrata HOM05D007923 ORTHO05D009651 1.4e-41 173.3 158 57.6
Carub.0006s2829 Capsella rubella HOM05D007923 ORTHO05D009651 7.1e-38 161.0 167 56.9
AL5G13910 Arabidopsis lyrata HOM05D007923 ORTHO05D009651 9.3e-38 160.6 141 56.7
Thhalv10022160m.g Eutrema salsugineum HOM05D007923 ORTHO05D009651 1.8e-36 156.4 174 52.9
AL5G13900 Arabidopsis lyrata HOM05D007923 ORTHO05D009651 2.3e-36 156.0 215 44.2
A05p37330 Brassica napus HOM05D007923 ORTHO05D009651 3.3e-35 152.1 174 50.6
BraA05t22530Z Brassica rapa HOM05D007923 ORTHO05D009651 3.3e-35 152.1 174 50.6
CARHR179580 Cardamine hirsuta HOM05D007923 ORTHO05D009651 9.6e-35 150.6 163 48.5
BcaC05g29300 Brassica carinata HOM05D007923 ORTHO05D009651 8.1e-34 147.5 174 50.0
C05p55840 Brassica napus HOM05D007923 ORTHO05D009651 8.1e-34 147.5 174 50.0
BolC5t34253H Brassica oleracea HOM05D007923 ORTHO05D009651 8.1e-34 147.5 174 50.0
BcaC05g29301 Brassica carinata HOM05D007923 ORTHO05D009651 9.9e-32 140.6 174 48.3
C05p55860 Brassica napus HOM05D007923 ORTHO05D009651 9.9e-32 140.6 174 48.3
BolC5t34255H Brassica oleracea HOM05D007923 ORTHO05D009651 9.9e-32 140.6 174 48.3
BcaC09g48206 Brassica carinata HOM05D007923 ORTHO05D009651 1.1e-30 137.1 173 49.7
AT1G47450 Arabidopsis thaliana HOM05D007923 ORTHO05D009651 2.4e-30 136.0 175 48.6
BcaB06g25567 Brassica carinata HOM05D007923 ORTHO05D009651 1.2e-29 133.7 163 49.1
BcaC05g29302 Brassica carinata HOM05D007923 ORTHO05D009651 2.1e-29 132.9 161 48.4
C05p55870 Brassica napus HOM05D007923 ORTHO05D009651 2.1e-29 132.9 161 48.4
BolC5t34256H Brassica oleracea HOM05D007923 ORTHO05D009651 2.1e-29 132.9 161 48.4
BcaB04g20407 Brassica carinata HOM05D007923 ORTHO05D009651 3.9e-28 128.6 147 46.3
BcaB06g25556 Brassica carinata HOM05D007923 ORTHO05D009651 3.9e-28 128.6 166 48.8
BraA05t22535Z Brassica rapa HOM05D007923 ORTHO05D009651 1.5e-27 126.7 161 47.2
BraA05t22533Z Brassica rapa HOM05D007923 ORTHO05D009651 2.5e-27 125.9 161 46.6
BcaC05g29304 Brassica carinata HOM05D007923 ORTHO05D009651 3.3e-27 125.6 161 46.6
A05p37350 Brassica napus HOM05D007923 ORTHO05D009651 3.3e-27 125.6 161 46.6
C05p55880 Brassica napus HOM05D007923 ORTHO05D009651 3.3e-27 125.6 161 46.6
BolC5t34257H Brassica oleracea HOM05D007923 ORTHO05D009651 3.3e-27 125.6 161 46.6
BraA05t22532Z Brassica rapa HOM05D007923 ORTHO05D009651 3.3e-27 125.6 161 46.6
A05p37360 Brassica napus HOM05D007923 ORTHO05D009651 5.6e-27 124.8 160 46.9
BraA05t22534Z Brassica rapa HOM05D007923 ORTHO05D009651 7.4e-27 124.4 161 46.6
A05p37340 Brassica napus HOM05D007923 ORTHO05D009651 1.6e-26 123.2 161 46.0
BraA05t22531Z Brassica rapa HOM05D007923 ORTHO05D009651 1.6e-26 123.2 161 46.0
C05p55890 Brassica napus HOM05D007923 ORTHO05D009651 2.8e-26 122.5 161 46.6
BolC5t34258H Brassica oleracea HOM05D007923 ORTHO05D009651 2.8e-26 122.5 161 46.6
BolC1t05274H Brassica oleracea HOM05D007923 ORTHO05D009651 3.7e-26 122.1 161 49.1
BraA01t04147Z Brassica rapa HOM05D007923 ORTHO05D009651 1.4e-25 120.2 161 48.4
THA.LOC104799715 Tarenaya hassleriana HOM05D007923 ORTHO05D009651 4.0e-25 118.6 164 41.5
BcaC05g29305 Brassica carinata HOM05D007923 ORTHO05D009651 2.9e-23 112.5 131 47.3
Carub.0001s4211 Capsella rubella HOM05D007923 ORTHO05D009651 1.1e-22 110.5 141 40.4
AL1G61300 Arabidopsis lyrata HOM05D007923 ORTHO05D009651 1.9e-22 109.8 155 40.0
CARHR043170 Cardamine hirsuta HOM05D007923 ORTHO05D009651 2.5e-22 109.4 142 38.7
Sp1g39520 Schrenkiella parvula HOM05D007923 ORTHO05D009651 1.6e-21 106.7 152 38.8
THA.LOC104810160 Tarenaya hassleriana HOM05D007923 ORTHO05D009651 1.0e-20 104.0 115 45.2
AT1G52970 Arabidopsis thaliana HOM05D007923 ORTHO05D009651 1.3e-20 103.6 155 36.8
BcaC09g48207 Brassica carinata HOM05D007923 ORTHO05D009651 2.5e-19 99.4 136 41.2
CARHR103140 Cardamine hirsuta HOM05D007923 ORTHO05D009651 2.5e-19 99.4 144 36.8
Thhalv10012072m.g Eutrema salsugineum HOM05D007923 ORTHO05D009651 3.3e-19 99.0 152 38.2
BcaC08g44686 Brassica carinata HOM05D007923 ORTHO05D009651 6.3e-18 94.7 82 54.9
THA.LOC104824530 Tarenaya hassleriana HOM05D007923 ORTHO05D009651 1.1e-17 94.0 154 34.4
THA.LOC104803521 Tarenaya hassleriana HOM05D007923 ORTHO05D009651 4.5e-16 88.6 124 37.9
COL.COLO4_10003 Corchorus olitorius HOM05D007923 ORTHO05D009651 5.0e-15 85.1 157 35.0
C06p22200 Brassica napus HOM05D007923 ORTHO05D009651 6.1e-13 78.2 138 37.0
Cpa.g.sc4.156 Carica papaya HOM05D007923 ORTHO05D009651 3.9e-12 75.5 121 37.2
BolC6t37406H Brassica oleracea HOM05D007923 ORTHO05D009651 1.1e-11 73.9 137 37.2
Medtr1g054825 Medicago truncatula HOM05D008402 ORTHO05D000988 5.7e-11 71.6 152 33.6
C05p55900 Brassica napus HOM05D007923 ORTHO05D009651 1.7e-10 70.1 47 59.6
QL02p094689 Quercus lobata HOM05D008402 ORTHO05D009651 1.7e-10 70.1 143 32.2
Thecc.05G151700 Theobroma cacao HOM05D001614 ORTHO05D000988 2.8e-10 69.3 144 31.2
Carub.0006s2294 Capsella rubella HOM05D007888 ORTHO05D009976 6.3e-10 68.2 140 30.0
Eucgr.C00225 Eucalyptus grandis HOM05D008402 ORTHO05D009651 1.1e-09 67.4 97 30.9
Cpa.g.sc127.52 Carica papaya HOM05D014073 ORTHO05D014166 6.9e-09 64.7 93 34.4
Eucgr.C00224 Eucalyptus grandis HOM05D007923 ORTHO05D009651 6.9e-09 64.7 76 35.5
TPR.G36159 Trifolium pratense HOM05D010700 ORTHO05D012225 6.9e-09 64.7 80 36.2
Sp2g20590 Schrenkiella parvula HOM05D007888 ORTHO05D009976 9.1e-09 64.3 151 31.1
COL.COLO4_13737 Corchorus olitorius HOM05D001614 ORTHO05D000988 1.5e-08 63.5 78 37.2
THA.LOC104813239 Tarenaya hassleriana HOM05D007923 ORTHO05D009651 1.5e-08 63.5 146 35.6
Eucgr.C00226 Eucalyptus grandis HOM05D042140 ORTHO05D009651 2.0e-08 63.2 77 33.8
AL4G10990 Arabidopsis lyrata HOM05D007888 ORTHO05D009976 2.6e-08 62.8 148 29.7
Sp4g04720 Schrenkiella parvula HOM05D007888 ORTHO05D009976 2.6e-08 62.8 149 29.5
COL.COLO4_33207 Corchorus olitorius HOM05D001614 ORTHO05D000988 3.4e-08 62.4 124 31.5
Migut.F01215 Erythranthe guttata HOM05D002073 ORTHO05D001803 4.5e-08 62.0 102 33.3
AL4G10980 Arabidopsis lyrata HOM05D007888 ORTHO05D009976 5.9e-08 61.6 148 28.4
Thhalv10000516m.g Eutrema salsugineum HOM05D007888 ORTHO05D009976 5.9e-08 61.6 149 30.9
MD13G1274700 Malus domestica HOM05D025175 ORTHO05D009651 1.0e-07 60.8 88 33.0
THA.LOC104817628 Tarenaya hassleriana HOM05D007923 ORTHO05D009976 1.0e-07 60.8 147 33.3
Rhsim03G0156800 Rhododendron simsii HOM05D008521 ORTHO05D009651 1.3e-07 60.5 91 33.0
Glyma.06G245700 Glycine max HOM05D010700 ORTHO05D012225 1.7e-07 60.1 77 33.8
Gohir.D05G328910 Gossypium hirsutum HOM05D002073 ORTHO05D001803 1.7e-07 60.1 79 36.7
Medtr5g097880 Medicago truncatula HOM05D010700 ORTHO05D012225 1.7e-07 60.1 76 34.2
RcHm_v2.0_Chr2g0133141 Rosa chinensis HOM05D012941 ORTHO05D009651 2.2e-07 59.7 136 33.1
Sp4g04740 Schrenkiella parvula HOM05D007888 ORTHO05D009976 2.2e-07 59.7 149 29.5
C01p53020 Brassica napus HOM05D007888 ORTHO05D009976 2.9e-07 59.3 159 31.4
Thecc.10G125700 Theobroma cacao HOM05D002073 ORTHO05D001803 2.9e-07 59.3 72 36.1
Psat4g125080 Pisum sativum HOM05D010700 ORTHO05D012225 3.8e-07 58.9 76 35.5
C01p52840 Brassica napus HOM05D007888 ORTHO05D009976 5.0e-07 58.5 149 28.9
C01p52860 Brassica napus HOM05D007888 ORTHO05D009976 5.0e-07 58.5 149 28.9
AT2G21655 Arabidopsis thaliana HOM05D007888 ORTHO05D009976 6.5e-07 58.2 147 27.9
C01p52810 Brassica napus HOM05D007888 ORTHO05D009976 6.5e-07 58.2 149 28.9
BolC1t05218H Brassica oleracea HOM05D007888 ORTHO05D009976 6.5e-07 58.2 149 29.5
BolC1t05221H Brassica oleracea HOM05D007888 ORTHO05D009976 6.5e-07 58.2 149 28.9
C01p52800 Brassica napus HOM05D007888 ORTHO05D009976 8.5e-07 57.8 149 29.5
Phvul.001G071800 Phaseolus vulgaris HOM05D008402 ORTHO05D000988 8.5e-07 57.8 78 32.1
BcaC09g48240 Brassica carinata HOM05D007888 ORTHO05D009976 1.1e-06 57.4 149 29.5
Thecc.09G158400 Theobroma cacao HOM05D002073 ORTHO05D001803 1.1e-06 57.4 100 32.0
AT3G29797 Arabidopsis thaliana HOM05D007888 ORTHO05D009976 1.4e-06 57.0 90 30.0
Glyma.06G245800 Glycine max HOM05D010700 ORTHO05D012225 1.4e-06 57.0 80 28.8
BcaC09g48239 Brassica carinata HOM05D007888 ORTHO05D009976 1.9e-06 56.6 149 28.9
Lalb_Chr08g0236561 Lupinus albus HOM05D008402 ORTHO05D000988 1.9e-06 56.6 99 30.3
Gohir.D05G328710 Gossypium hirsutum HOM05D002073 ORTHO05D001803 3.2e-06 55.8 78 35.9
Thecc.10G125800 Theobroma cacao HOM05D002073 ORTHO05D001803 3.2e-06 55.8 78 33.3
AL3G11060 Arabidopsis lyrata HOM05D007888 ORTHO05D009976 4.2e-06 55.5 143 27.3
BolC1t05220H Brassica oleracea HOM05D007888 ORTHO05D009976 4.2e-06 55.5 149 28.2
Gohir.D05G328915 Gossypium hirsutum HOM05D002073 ORTHO05D001803 4.2e-06 55.5 67 37.3
Medtr8g063720 Medicago truncatula HOM05D010700 ORTHO05D012225 4.2e-06 55.5 100 28.0
Glyma.06G245400 Glycine max HOM05D010700 ORTHO05D012225 5.5e-06 55.1 78 30.8
Gohir.D05G326600 Gossypium hirsutum HOM05D002073 ORTHO05D001803 5.5e-06 55.1 78 33.3
Gohir.D05G332261 Gossypium hirsutum HOM05D002073 ORTHO05D001803 5.5e-06 55.1 78 34.6
C01p52820 Brassica napus HOM05D007888 ORTHO05D009976 7.2e-06 54.7 149 28.9
BolC1t05219H Brassica oleracea HOM05D007888 ORTHO05D009976 7.2e-06 54.7 149 28.9
BcaC01g00727 Brassica carinata HOM05D007888 ORTHO05D009976 9.4e-06 54.3 150 28.7
Lj3g0005293 Lotus japonicus HOM05D010700 ORTHO05D012225 9.4e-06 54.3 71 35.2
Thecc.09G152800 Theobroma cacao HOM05D002073 ORTHO05D001803 9.4e-06 54.3 73 31.5


User provided reference genes

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