Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT5G35080 Arabidopsis thaliana HOM05D005541 ORTHO05D006875 3.0e-162 575.1 283 100.0
Carub.0007s3085 Capsella rubella HOM05D005541 ORTHO05D006875 1.3e-141 506.5 283 88.3
Sp4g15930 Schrenkiella parvula HOM05D005541 ORTHO05D006875 1.0e-133 480.3 277 84.1
BcaC02g11442 Brassica carinata HOM05D005541 ORTHO05D006875 1.9e-129 466.1 283 81.3
C04p15500 Brassica napus HOM05D005541 ORTHO05D006875 1.9e-129 466.1 283 81.3
BolC4t23121H Brassica oleracea HOM05D005541 ORTHO05D006875 1.9e-129 466.1 283 81.3
BcaB02g10581 Brassica carinata HOM05D005541 ORTHO05D006875 7.4e-129 464.2 284 82.0
BraA05t20138Z Brassica rapa HOM05D005541 ORTHO05D006875 9.7e-129 463.8 283 80.9
BcaB01g03929 Brassica carinata HOM05D005541 ORTHO05D006875 6.3e-128 461.1 277 82.3
A05p11950 Brassica napus HOM05D005541 ORTHO05D006875 6.3e-128 461.1 283 80.6
BolC3t14579H Brassica oleracea HOM05D005541 ORTHO05D006875 7.7e-126 454.1 278 79.9
Thhalv10002066m.g Eutrema salsugineum HOM05D005541 ORTHO05D006875 1.0e-125 453.8 278 79.5
C03p21960 Brassica napus HOM05D005541 ORTHO05D006875 2.8e-120 435.6 268 79.5
THA.LOC104815290 Tarenaya hassleriana HOM05D005541 ORTHO05D006875 9.1e-119 430.6 296 73.3
THA.LOC104808948 Tarenaya hassleriana HOM05D005541 ORTHO05D006875 4.2e-116 421.8 289 71.3
Aa31LG10G11810 Aethionema arabicum HOM05D005541 ORTHO05D006875 8.2e-112 407.5 247 80.2
CARHR217140 Cardamine hirsuta HOM05D005541 ORTHO05D006875 7.7e-110 401.0 227 87.7
BcaC01g05834 Brassica carinata HOM05D005541 ORTHO05D006875 6.3e-96 354.8 215 80.5
Rhsim03G0253300 Rhododendron simsii HOM05D005541 ORTHO05D006875 4.5e-94 348.6 281 60.5
Thecc.09G137600 Theobroma cacao HOM05D005541 ORTHO05D006875 2.9e-93 345.9 285 60.7
Cc06_g07640 Coffea canephora HOM05D005541 ORTHO05D006875 6.5e-93 344.7 285 59.6
PGR142G4414 Punica granatum HOM05D005541 ORTHO05D006875 3.3e-92 342.4 276 62.7
Dinv36447 Davidia involucrata HOM05D005541 ORTHO05D006875 7.2e-92 341.3 290 58.3
Migut.J01236 Erythranthe guttata HOM05D005541 ORTHO05D006875 1.2e-91 340.5 286 59.4
Manes.14G119600 Manihot esculenta HOM05D005541 ORTHO05D006875 1.2e-91 340.5 278 59.0
TWI32G1342 Tripterygium wilfordii HOM05D005541 ORTHO05D006875 3.6e-91 339.0 284 59.5
CiPaw.04G177400 Carya illinoinensis HOM05D005541 ORTHO05D006875 6.1e-91 338.2 273 60.4
vmacro06115 Vaccinium macrocarpon HOM05D005541 ORTHO05D006875 6.1e-91 338.2 272 60.7
Ciclev10009016m.g Citrus clementina HOM05D005541 ORTHO05D006875 1.8e-90 336.7 282 57.8
Cfa002261 Carpinus fangiana HOM05D005541 ORTHO05D006875 3.0e-90 335.9 270 60.7
QL02p090804 Quercus lobata HOM05D005541 ORTHO05D006875 5.2e-90 335.1 286 59.8
Potri.006G061600 Populus trichocarpa HOM05D005541 ORTHO05D006875 6.8e-90 334.7 282 58.9
Atru.chr7.2014 Acer truncatum HOM05D005541 ORTHO05D006875 1.5e-89 333.6 278 61.2
Cpa.g.sc46.69 Carica papaya HOM05D005541 ORTHO05D006875 1.5e-89 333.6 285 58.6
Lj6g0025347 Lotus japonicus HOM05D005541 ORTHO05D006875 1.5e-89 333.6 278 59.0
Medtr2g450740 Medicago truncatula HOM05D005541 ORTHO05D006875 3.4e-89 332.4 292 58.9
TWI63G0008 Tripterygium wilfordii HOM05D005541 ORTHO05D006875 3.4e-89 332.4 283 59.0
TWI63G1467 Tripterygium wilfordii HOM05D005541 ORTHO05D006875 5.7e-89 331.6 283 58.7
Actinidia26358 Actinidia chinensis HOM05D005541 ORTHO05D006875 7.5e-89 331.3 265 63.8
GSVIVG01012859001 Vitis vinifera HOM05D005541 ORTHO05D006875 7.5e-89 331.3 288 58.7
Duzib168G0734 Durio zibethinus HOM05D005541 ORTHO05D006875 9.8e-89 330.9 268 60.1
MSTRG.6077 Avicennia marina HOM05D005541 ORTHO05D006875 3.7e-88 328.9 276 58.7
Gorai.004G109500 Gossypium raimondii HOM05D005541 ORTHO05D006875 3.7e-88 328.9 269 60.6
SGA_v2.0_scaffold45G17077 Striga asiatica HOM05D005541 ORTHO05D006875 3.7e-88 328.9 259 61.0
MD15G1162200 Malus domestica HOM05D005541 ORTHO05D006875 1.1e-87 327.4 272 60.3
Psat1g021320 Pisum sativum HOM05D005541 ORTHO05D006875 1.1e-87 327.4 292 58.2
Glyma.15G198100 Glycine max HOM05D005541 ORTHO05D006875 1.8e-87 326.6 247 64.4
Gohir.D13G207800 Gossypium hirsutum HOM05D005541 ORTHO05D006875 1.8e-87 326.6 289 58.8
RcHm_v2.0_Chr2g0087061 Rosa chinensis HOM05D005541 ORTHO05D006875 1.8e-87 326.6 285 57.5
Gorai.013G236700 Gossypium raimondii HOM05D005541 ORTHO05D006875 2.4e-87 326.2 289 58.8
MD02G1018200 Malus domestica HOM05D005541 ORTHO05D006875 4.1e-87 325.5 285 58.2
Aqoxy7G03592 Aquilegia oxysepala HOM05D005541 ORTHO05D006875 5.4e-87 325.1 272 58.5
ClCG06G011880 Citrullus lanatus HOM05D005541 ORTHO05D006875 7.0e-87 324.7 272 59.2
FvH4_1g02000 Fragaria vesca HOM05D005541 ORTHO05D006875 9.2e-87 324.3 289 56.4
FAN26G0160 Fragaria x ananassa HOM05D005541 ORTHO05D006875 1.6e-86 323.6 292 56.2
Gohir.A13G202000 Gossypium hirsutum HOM05D005541 ORTHO05D006875 1.6e-86 323.6 272 59.9
Sabra06G0044200 Salix brachista HOM05D005541 ORTHO05D006875 1.6e-86 323.6 282 58.2
Potri.018G118200 Populus trichocarpa HOM05D005541 ORTHO05D006875 2.0e-86 323.2 282 58.2
Gohir.A08G090600 Gossypium hirsutum HOM05D005541 ORTHO05D006875 4.5e-86 322.0 269 59.9
arahy.Tifrunner.gnm1.ann1.9T6TW9 Arachis hypogaea HOM05D005541 ORTHO05D006875 5.9e-86 321.6 264 59.8
Lalb_Chr08g0233581 Lupinus albus HOM05D005541 ORTHO05D006875 7.8e-86 321.2 268 59.3
Glyma.09G091600 Glycine max HOM05D005541 ORTHO05D006875 1.0e-85 320.9 275 58.5
Ca_03100_v3 Cicer arietinum L. HOM05D005541 ORTHO05D006875 1.7e-85 320.1 291 57.0
FAN28G0031 Fragaria x ananassa HOM05D005541 ORTHO05D006875 1.7e-85 320.1 285 56.1
HanXRQChr03g0063361 Helianthus annuus HOM05D005541 ORTHO05D006875 1.7e-85 320.1 279 56.6
arahy.Tifrunner.gnm1.ann1.H1LUDS Arachis hypogaea HOM05D005541 ORTHO05D006875 2.9e-85 319.3 263 59.7
Duzib187G1717 Durio zibethinus HOM05D005541 ORTHO05D006875 2.9e-85 319.3 260 60.8
Actinidia14228 Actinidia chinensis HOM05D005541 ORTHO05D006875 8.6e-85 317.8 250 62.8
Prupe.7G257600 Prunus persica HOM05D005541 ORTHO05D006875 8.6e-85 317.8 288 57.3
VMungo1309G2820 Vigna mungo HOM05D005541 ORTHO05D006875 1.5e-84 317.0 266 60.2
Phvul.009G212200 Phaseolus vulgaris HOM05D005541 ORTHO05D006875 2.5e-84 316.2 266 59.8
Lalb_Chr11g0073101 Lupinus albus HOM05D005541 ORTHO05D006875 9.5e-84 314.3 285 55.8
CANSAT11G2438 Cannabis sativa HOM05D005541 ORTHO05D006875 1.2e-83 313.9 265 58.1
Sed0001591 Sechium edule HOM05D005541 ORTHO05D006875 1.2e-83 313.9 282 56.0
Sopen07g003450 Solanum pennellii HOM05D005541 ORTHO05D006875 1.6e-83 313.5 284 55.6
Oeu012222.1 Olea europaea HOM05D005541 ORTHO05D006875 2.8e-83 312.8 282 54.6
Solyc07g007380.4 Solanum lycopersicum HOM05D005541 ORTHO05D006875 3.6e-83 312.4 284 55.6
CsaV3_1G028340 Cucumis sativus L. HOM05D005541 ORTHO05D006875 8.0e-83 311.2 272 58.5
Peaxi162Scf00088g00520 Petunia axillaris HOM05D005541 ORTHO05D006875 8.0e-83 311.2 268 56.3
MELO3C010277.2 Cucumis melo HOM05D005541 ORTHO05D006875 1.4e-82 310.5 272 58.5
HanXRQChr09g0241861 Helianthus annuus HOM05D005541 ORTHO05D006875 1.8e-82 310.1 276 56.9
Lsat_1_v5_gn_7_46800 Lactuca sativa HOM05D005541 ORTHO05D006875 2.3e-82 309.7 286 54.9
ECA240G1064 Erigeron canadensis HOM05D005541 ORTHO05D006875 4.0e-82 308.9 280 56.4
Sed0021107 Sechium edule HOM05D005541 ORTHO05D006875 4.0e-82 308.9 281 54.8
TAR100G0002 Trochodendron aralioides HOM05D005541 ORTHO05D006875 4.0e-82 308.9 274 55.8
TAR170G0003 Trochodendron aralioides HOM05D005541 ORTHO05D006875 4.0e-82 308.9 274 55.8
Nitab4.5_0002845g0020 Nicotiana tabacum HOM05D005541 ORTHO05D006875 5.2e-82 308.5 270 56.7
Nitab4.5_0002286g0050 Nicotiana tabacum HOM05D005541 ORTHO05D006875 1.2e-81 307.4 269 56.5
Hund09308 Selenicereus undatus HOM05D005541 ORTHO05D006875 1.5e-81 307.0 288 54.2
PGSC0003DMG400030689 Solanum tuberosum HOM05D005541 ORTHO05D006875 1.3e-80 303.9 284 54.9
CAN.G1281.6 Capsicum annuum HOM05D005541 ORTHO05D006875 6.4e-80 301.6 288 54.2
AUR62020012 Chenopodium quinoa HOM05D005541 ORTHO05D006875 8.3e-80 301.2 256 58.6
Sc08g0006020 Simmondsia chinensis HOM05D005541 ORTHO05D006875 3.2e-79 299.3 256 57.8
AUR62011221 Chenopodium quinoa HOM05D005541 ORTHO05D006875 2.0e-78 296.6 268 55.2
Nn8g39653 Nelumbo nucifera HOM05D005541 ORTHO05D006875 2.7e-78 296.2 281 53.4
Gohir.D08G101500 Gossypium hirsutum HOM05D005541 ORTHO05D006875 1.1e-76 290.8 269 55.8
ATR0767G116 Amborella trichopoda HOM05D005541 ORTHO05D006875 2.8e-75 286.2 288 51.7
DCAR_009345 Daucus carota HOM05D005541 ORTHO05D006875 4.7e-75 285.4 268 54.1
PSO017G3833 Papaver somniferum HOM05D005541 ORTHO05D006875 4.7e-75 285.4 291 48.5
PSO478G5201 Papaver somniferum HOM05D005541 ORTHO05D006875 5.2e-74 282.0 292 47.6
Dinv41444 Davidia involucrata HOM05D005541 ORTHO05D006875 8.9e-74 281.2 223 61.0
Eucgr.C00480 Eucalyptus grandis HOM05D005541 ORTHO05D006875 7.5e-73 278.1 283 50.5
HPP92_020539 Vanilla planifolia HOM05D005541 ORTHO05D006875 9.8e-73 277.7 272 50.7
COL.COLO4_33365 Corchorus olitorius HOM05D005541 ORTHO05D006875 1.7e-72 276.9 239 58.6
MBI15_g25760_MAGBIO Magnolia biondii HOM05D005541 ORTHO05D006875 3.2e-71 272.7 378 41.5
CSS0024399 Camellia sinensis var. sinensis HOM05D005541 ORTHO05D006875 3.5e-70 269.2 228 58.3
Lj7A439T20 Lonicera japonica HOM05D005541 ORTHO05D006875 3.5e-70 269.2 228 58.3
CDE02G2611 Ceratophyllum demersum HOM05D005541 ORTHO05D006875 7.8e-70 268.1 268 48.1
Gohir.D13G208000 Gossypium hirsutum HOM05D005541 ORTHO05D006875 1.9e-68 263.5 207 63.3
Haze_25444 Corylus avellana HOM05D005541 ORTHO05D006875 9.5e-68 261.2 244 55.7
Ah.09g224130 Amaranthus hybridus HOM05D005541 ORTHO05D006875 1.8e-66 256.9 224 57.6
EL10Ac8g18781 Beta vulgaris HOM05D005541 ORTHO05D006875 6.4e-64 248.4 219 58.0
Zm00001eb028460 Zea mays HOM05D005541 ORTHO05D006875 7.1e-63 245.0 278 44.2
Actinidia38706 Actinidia chinensis HOM05D005541 ORTHO05D006875 1.3e-61 240.7 207 57.5
FAN19G0623 Fragaria x ananassa HOM05D005541 ORTHO05D006875 1.4e-58 230.7 212 55.7
Oeu028018.1 Olea europaea HOM05D005541 ORTHO05D006875 4.4e-57 225.7 251 48.6
Pp3c2_6810 Physcomitrium patens HOM05D005541 ORTHO05D006875 7.8e-54 214.9 261 45.6
Pp3c1_27810 Physcomitrium patens HOM05D005541 ORTHO05D006875 1.1e-50 204.5 248 46.0
Zm00001eb136970 Zea mays HOM05D005541 ORTHO05D006875 1.2e-49 201.1 217 47.0
Mapoly0020s0022 Marchantia polymorpha HOM05D005541 ORTHO05D006875 8.4e-48 194.9 292 39.7
unitig_0.g507 Utricularia gibba HOM05D005541 ORTHO05D006875 8.7e-45 184.9 161 57.1
AagrBONN_evm.TU.Sc2ySwM_228.2742 Anthoceros agrestis HOM05D005541 ORTHO05D006875 5.6e-44 182.2 258 41.1
SMO174G0227 Selaginella moellendorffii HOM05D005541 ORTHO05D006875 2.8e-43 179.9 247 38.5
Oeu028135.2 Olea europaea HOM05D005541 ORTHO05D006875 6.0e-38 162.2 188 48.4
CBR_g45403 Chara braunii HOM05D005541 ORTHO05D006875 1.1e-31 141.4 256 34.4
SEGI_36543 Sequoiadendron giganteum HOM05D005541 ORTHO05D006875 1.8e-29 134.0 137 51.1
MCO11G854 Micromonas commoda HOM05D005541 ORTHO05D006875 4.3e-28 129.4 219 35.6
Os06g0644800 Oryza sativa ssp. japonica HOM05D005541 ORTHO05D006875 3.4e-25 119.8 126 46.0
Cre06.g257900 Chlamydomonas reinhardtii HOM05D005541 ORTHO05D006875 1.4e-23 114.4 166 39.8
CARHR217150 Cardamine hirsuta HOM05D005541 ORTHO05D006875 3.5e-22 109.8 57 87.7
Ca_27153_v3 Cicer arietinum L. HOM05D005541 ORTHO05D006875 1.3e-21 107.8 88 63.6
PRCOL_00001292 Prasinoderma coloniale HOM05D005541 ORTHO05D006875 7.2e-15 85.5 155 31.6
RcHm_v2.0_Chr1g0314561 Rosa chinensis HOM05D005541 ORTHO05D006875 3.9e-13 79.7 68 51.5
Ca_24194_v3 Cicer arietinum L. HOM05D000002 ORTHO05D000001 1.1e-12 78.2 111 39.6
unitig_0.g506 Utricularia gibba HOM05D001054 ORTHO05D007110 2.0e-12 77.4 86 45.3
RcHm_v2.0_Chr5g0069501 Rosa chinensis HOM05D005541 ORTHO05D006875 3.7e-11 73.2 57 54.4
RcHm_v2.0_Chr7g0241391 Rosa chinensis HOM05D005541 ORTHO05D006875 6.9e-10 68.9 43 65.1
HanXRQChr03g0068961 Helianthus annuus HOM05D005541 ORTHO05D006875 1.6e-06 57.8 49 61.2
Cfa024351 Carpinus fangiana HOM05D005541 ORTHO05D124727 2.7e-06 57.0 261 24.9


User provided reference genes

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