Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT5G33355 Arabidopsis thaliana HOM05D007338 ORTHO05D009406 5.4e-40 167.2 81 100.0
AT3G59930 Arabidopsis thaliana HOM05D007338 ORTHO05D009406 2.0e-39 165.2 81 98.8
AL5G42110 Arabidopsis lyrata HOM05D007338 ORTHO05D009406 1.2e-36 156.0 81 91.4
BcaB04g20323 Brassica carinata HOM05D007338 ORTHO05D009406 1.9e-21 105.5 78 69.2
AT1G34047 Arabidopsis thaliana HOM05D007338 ORTHO05D009406 2.5e-21 105.1 80 68.8
BcaC06g31804 Brassica carinata HOM05D007338 ORTHO05D009406 4.3e-21 104.4 79 64.6
BcaC09g49321 Brassica carinata HOM05D007338 ORTHO05D009406 4.3e-21 104.4 78 67.9
C01p37930 Brassica napus HOM05D007338 ORTHO05D009406 4.3e-21 104.4 78 67.9
Carub.0005s1075 Capsella rubella HOM05D007338 ORTHO05D009406 5.6e-21 104.0 81 60.5
BcaC09g49311 Brassica carinata HOM05D007338 ORTHO05D009406 7.3e-21 103.6 78 67.9
BcaC09g49314 Brassica carinata HOM05D007338 ORTHO05D009406 7.3e-21 103.6 78 67.9
BcaC09g49318 Brassica carinata HOM05D007338 ORTHO05D009406 7.3e-21 103.6 78 67.9
BcaC09g49319 Brassica carinata HOM05D007338 ORTHO05D009406 7.3e-21 103.6 78 67.9
BcaC09g49324 Brassica carinata HOM05D007338 ORTHO05D009406 7.3e-21 103.6 78 67.9
A01p29990 Brassica napus HOM05D007338 ORTHO05D009406 7.3e-21 103.6 78 67.9
A01p30010 Brassica napus HOM05D007338 ORTHO05D009406 7.3e-21 103.6 78 67.9
A01p30020 Brassica napus HOM05D007338 ORTHO05D009406 7.3e-21 103.6 78 67.9
A01p30030 Brassica napus HOM05D007338 ORTHO05D009406 7.3e-21 103.6 78 67.9
A01p30050 Brassica napus HOM05D007338 ORTHO05D009406 7.3e-21 103.6 78 67.9
A01p30070 Brassica napus HOM05D007338 ORTHO05D009406 7.3e-21 103.6 78 67.9
C01p37910 Brassica napus HOM05D007338 ORTHO05D009406 7.3e-21 103.6 78 67.9
C01p37970 Brassica napus HOM05D007338 ORTHO05D009406 7.3e-21 103.6 78 67.9
C01p37980 Brassica napus HOM05D007338 ORTHO05D009406 7.3e-21 103.6 78 67.9
C01p38030 Brassica napus HOM05D007338 ORTHO05D009406 7.3e-21 103.6 78 67.9
BraA01t03132Z Brassica rapa HOM05D007338 ORTHO05D009406 7.3e-21 103.6 78 67.9
BcaC06g31805 Brassica carinata HOM05D007338 ORTHO05D009406 9.5e-21 103.2 79 64.6
BcaC09g49320 Brassica carinata HOM05D007338 ORTHO05D009406 9.5e-21 103.2 78 66.7
A01p30000 Brassica napus HOM05D007338 ORTHO05D009406 9.5e-21 103.2 78 66.7
C01p37940 Brassica napus HOM05D007338 ORTHO05D009406 9.5e-21 103.2 78 66.7
Carub.0005s1076 Capsella rubella HOM05D007338 ORTHO05D009406 9.5e-21 103.2 81 60.5
BcaB04g20324 Brassica carinata HOM05D007338 ORTHO05D009406 1.6e-20 102.4 78 66.7
A01p30040 Brassica napus HOM05D007338 ORTHO05D009406 2.1e-20 102.1 78 66.7
BcaC09g49309 Brassica carinata HOM05D007338 ORTHO05D009406 2.8e-20 101.7 78 66.7
BcaC09g49316 Brassica carinata HOM05D007338 ORTHO05D009406 2.8e-20 101.7 78 66.7
C01p38000 Brassica napus HOM05D007338 ORTHO05D009406 2.8e-20 101.7 78 66.7
C01p38060 Brassica napus HOM05D007338 ORTHO05D009406 2.8e-20 101.7 78 66.7
A01p30060 Brassica napus HOM05D007338 ORTHO05D009406 4.7e-20 100.9 78 66.7
C01p37950 Brassica napus HOM05D007338 ORTHO05D009406 4.7e-20 100.9 78 66.7
BcaC04g22284 Brassica carinata HOM05D007338 ORTHO05D009406 6.2e-20 100.5 91 61.5
BcaC09g49322 Brassica carinata HOM05D007338 ORTHO05D009406 6.2e-20 100.5 78 65.4
C01p37920 Brassica napus HOM05D007338 ORTHO05D009406 6.2e-20 100.5 78 65.4
A09p17160 Brassica napus HOM05D007338 ORTHO05D009406 1.8e-19 99.0 91 58.2
C01p37960 Brassica napus HOM05D007338 ORTHO05D009406 1.8e-19 99.0 76 65.8
BcaC04g22279 Brassica carinata HOM05D007338 ORTHO05D009406 3.1e-19 98.2 91 59.3
C09p21220 Brassica napus HOM05D007338 ORTHO05D009406 3.1e-19 98.2 91 60.4
BolC9t55035H Brassica oleracea HOM05D007338 ORTHO05D009406 3.1e-19 98.2 91 59.3
Sp6g08720 Schrenkiella parvula HOM05D007338 ORTHO05D009406 5.2e-19 97.4 92 55.4
Sp5g03420 Schrenkiella parvula HOM05D007338 ORTHO05D009406 1.5e-18 95.9 92 53.3
C04p48140 Brassica napus HOM05D007338 ORTHO05D009406 2.0e-18 95.5 94 53.2
BolC4t26404H Brassica oleracea HOM05D007338 ORTHO05D009406 2.0e-18 95.5 94 53.2
Sp4g10780 Schrenkiella parvula HOM05D007338 ORTHO05D009406 2.6e-18 95.1 92 55.4
BcaC07g40398 Brassica carinata HOM05D007338 ORTHO05D009406 3.4e-18 94.7 90 56.7
BcaC09g49310 Brassica carinata HOM05D007338 ORTHO05D009406 4.4e-18 94.4 79 63.3
C01p38040 Brassica napus HOM05D007338 ORTHO05D009406 4.4e-18 94.4 79 63.3
C09p21390 Brassica napus HOM05D007338 ORTHO05D009406 4.4e-18 94.4 84 59.5
BolC1t03768H Brassica oleracea HOM05D007338 ORTHO05D009406 4.4e-18 94.4 79 63.3
Sp5g03390 Schrenkiella parvula HOM05D007338 ORTHO05D009406 4.4e-18 94.4 92 52.2
Sp7g00850 Schrenkiella parvula HOM05D007338 ORTHO05D009406 4.4e-18 94.4 90 57.8
BcaB07g31238 Brassica carinata HOM05D007338 ORTHO05D009406 7.5e-18 93.6 91 58.2
BcaB07g31240 Brassica carinata HOM05D007338 ORTHO05D009406 7.5e-18 93.6 91 58.2
BcaB06g27588 Brassica carinata HOM05D007338 ORTHO05D009406 9.8e-18 93.2 94 52.1
BcaB06g27589 Brassica carinata HOM05D007338 ORTHO05D009406 9.8e-18 93.2 94 52.1
BolC9t55025H Brassica oleracea HOM05D007338 ORTHO05D009406 1.3e-17 92.8 84 60.7
Sp5g03400 Schrenkiella parvula HOM05D007338 ORTHO05D009406 1.3e-17 92.8 92 52.2
C01p38020 Brassica napus HOM05D007338 ORTHO05D009406 1.7e-17 92.4 83 60.2
BolC1t03766H Brassica oleracea HOM05D007338 ORTHO05D009406 1.7e-17 92.4 83 60.2
BcaB07g31237 Brassica carinata HOM05D007338 ORTHO05D009406 4.9e-17 90.9 91 57.1
A04p14100 Brassica napus HOM05D007338 ORTHO05D009406 4.9e-17 90.9 94 51.1
BraA04t17071Z Brassica rapa HOM05D007338 ORTHO05D009406 4.9e-17 90.9 94 51.1
C09p21230 Brassica napus HOM05D007338 ORTHO05D009406 6.4e-17 90.5 82 61.0
Sp2g03780 Schrenkiella parvula HOM05D007338 ORTHO05D009406 6.4e-17 90.5 91 53.8
C09p21400 Brassica napus HOM05D007338 ORTHO05D009406 1.1e-16 89.7 79 59.5
BraA01t03137Z Brassica rapa HOM05D007338 ORTHO05D009406 1.1e-16 89.7 83 57.8
Sp6g08680 Schrenkiella parvula HOM05D007338 ORTHO05D009406 1.4e-16 89.4 92 53.3
BraA01t03129Z Brassica rapa HOM05D007338 ORTHO05D009406 1.9e-16 89.0 83 57.8
BraA01t03131Z Brassica rapa HOM05D007338 ORTHO05D009406 1.9e-16 89.0 83 57.8
BraA01t03133Z Brassica rapa HOM05D007338 ORTHO05D009406 1.9e-16 89.0 83 57.8
BraA01t03134Z Brassica rapa HOM05D007338 ORTHO05D009406 1.9e-16 89.0 83 57.8
BraA01t03136Z Brassica rapa HOM05D007338 ORTHO05D009406 1.9e-16 89.0 83 57.8
Sp5g03410 Schrenkiella parvula HOM05D007338 ORTHO05D009406 1.9e-16 89.0 92 54.3
Sp2g03760 Schrenkiella parvula HOM05D007338 ORTHO05D009406 5.4e-16 87.4 91 51.6
BraA01t03130Z Brassica rapa HOM05D007338 ORTHO05D009406 7.0e-16 87.0 84 57.1
BcaC09g49315 Brassica carinata HOM05D007338 ORTHO05D009406 2.0e-15 85.5 78 56.4
BcaB08g34762 Brassica carinata HOM05D007338 ORTHO05D009406 4.6e-15 84.3 95 48.4
Carub.0005s1074 Capsella rubella HOM05D007338 ORTHO05D009406 4.6e-15 84.3 91 53.8
Carub.0005s1073 Capsella rubella HOM05D007338 ORTHO05D009406 7.8e-15 83.6 91 53.8
BraA01t03135Z Brassica rapa HOM05D007338 ORTHO05D009406 1.3e-14 82.8 83 55.4
Carub.0005s1072 Capsella rubella HOM05D007338 ORTHO05D009406 1.3e-14 82.8 91 53.8
SpUn1255_0010 Schrenkiella parvula HOM05D007338 ORTHO05D009406 1.1e-13 79.7 99 44.4
Sp3g32460 Schrenkiella parvula HOM05D007338 ORTHO05D009406 1.5e-13 79.3 100 44.0
A09p17150 Brassica napus HOM05D007338 ORTHO05D009406 1.9e-13 79.0 78 60.3
BraA09t37346Z Brassica rapa HOM05D007338 ORTHO05D009406 1.9e-13 79.0 78 60.3
CARHR284260 Cardamine hirsuta HOM05D007338 ORTHO05D009406 2.5e-13 78.6 58 62.1
BcaC09g49317 Brassica carinata HOM05D007338 ORTHO05D009406 9.5e-13 76.6 78 51.3
BolC1t03760H Brassica oleracea HOM05D007338 ORTHO05D009406 1.8e-11 72.4 56 60.7
AL4G15700 Arabidopsis lyrata HOM05D007338 ORTHO05D013190 2.3e-11 72.0 78 44.9
Sp3g31250 Schrenkiella parvula HOM05D007338 ORTHO05D009406 8.9e-11 70.1 97 43.3
Sp5g03380 Schrenkiella parvula HOM05D007338 ORTHO05D009406 8.9e-11 70.1 71 49.3
Sp7g07650 Schrenkiella parvula HOM05D007338 ORTHO05D009406 4.4e-10 67.8 93 41.9
CARHR101940 Cardamine hirsuta HOM05D007338 ORTHO05D009406 8.3e-09 63.5 80 47.5
BraA09t37396Z Brassica rapa HOM05D024172 ORTHO05D024522 7.1e-08 60.5 80 45.0
A09p17680 Brassica napus HOM05D024172 ORTHO05D024522 9.2e-08 60.1 80 45.0
BNapus_Darmor_BZH_scaffold_155p00070 Brassica napus HOM05D024172 ORTHO05D024522 9.2e-08 60.1 80 45.0
C09p22020 Brassica napus HOM05D024172 ORTHO05D024522 9.2e-08 60.1 80 45.0
BolC9t55107H Brassica oleracea HOM05D024172 ORTHO05D024522 9.2e-08 60.1 80 45.0
BolC1t05675H Brassica oleracea HOM05D011267 ORTHO05D013190 4.6e-07 57.8 80 47.5
BolC1t03757H Brassica oleracea HOM05D007338 ORTHO05D009406 6.0e-07 57.4 78 47.4
BraA01t04490Z Brassica rapa HOM05D011267 ORTHO05D013190 1.0e-06 56.6 80 46.2
CARHR080190 Cardamine hirsuta HOM05D011267 ORTHO05D013190 1.7e-06 55.8 78 43.6


User provided reference genes

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