Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT5G32590 Arabidopsis thaliana HOM05D008458 ORTHO05D010628 0.0e+00 1406.7 762 100.0
AL3G38160 Arabidopsis lyrata HOM05D008458 ORTHO05D010628 3.1e-238 828.9 794 62.7
AL8G11870 Arabidopsis lyrata HOM05D008458 ORTHO05D010628 9.0e-238 827.4 784 60.2
AL8G20450 Arabidopsis lyrata HOM05D008458 ORTHO05D010628 1.7e-236 823.2 780 62.7
AL1G65160 Arabidopsis lyrata HOM05D008458 ORTHO05D010628 2.2e-236 822.8 763 62.3
AL6G42690 Arabidopsis lyrata HOM05D008458 ORTHO05D010628 5.4e-235 818.1 763 62.4
AL9U10230 Arabidopsis lyrata HOM05D008458 ORTHO05D010628 1.6e-234 816.6 763 63.7
AL1G61970 Arabidopsis lyrata HOM05D008458 ORTHO05D010628 6.0e-234 814.7 763 58.8
AL5G12240 Arabidopsis lyrata HOM05D008458 ORTHO05D010628 5.6e-232 808.1 787 60.6
AL1G47450 Arabidopsis lyrata HOM05D008458 ORTHO05D010628 1.1e-230 803.9 742 60.5
AL1G57330 Arabidopsis lyrata HOM05D008458 ORTHO05D010628 2.4e-227 792.7 763 62.0
AL8G45410 Arabidopsis lyrata HOM05D008458 ORTHO05D010628 1.2e-226 790.4 775 61.3
AT3G43148 Arabidopsis thaliana HOM05D008458 ORTHO05D010628 1.3e-225 786.9 743 62.4
AL6G47370 Arabidopsis lyrata HOM05D008458 ORTHO05D010628 1.8e-225 786.6 785 60.4
AL2G18400 Arabidopsis lyrata HOM05D008458 ORTHO05D010628 5.8e-221 771.5 776 59.4
AL2G23360 Arabidopsis lyrata HOM05D008458 ORTHO05D010628 2.5e-219 766.1 737 61.1
AL4G24140 Arabidopsis lyrata HOM05D008458 ORTHO05D010628 7.9e-218 761.1 763 57.0
AL3G37710 Arabidopsis lyrata HOM05D008458 ORTHO05D010628 1.2e-213 747.3 763 58.7
AL5G23160 Arabidopsis lyrata HOM05D008458 ORTHO05D010628 1.3e-207 727.2 781 57.1
AL5G19630 Arabidopsis lyrata HOM05D008458 ORTHO05D010628 1.0e-185 654.4 794 51.6
AL8G33480 Arabidopsis lyrata HOM05D008458 ORTHO05D010628 4.7e-146 522.7 956 39.9
AL77U10020 Arabidopsis lyrata HOM05D008458 ORTHO05D010628 8.1e-146 521.9 763 44.0
AL4G14310 Arabidopsis lyrata HOM05D008458 ORTHO05D010628 8.9e-137 491.9 326 74.2
AT3G30230 Arabidopsis thaliana HOM05D008458 ORTHO05D010628 1.7e-132 477.6 713 44.7
AL6G45550 Arabidopsis lyrata HOM05D008458 ORTHO05D010628 1.2e-130 471.5 412 60.9
AL8G10170 Arabidopsis lyrata HOM05D008458 ORTHO05D010628 9.9e-120 435.3 480 52.9
AT4G06688 Arabidopsis thaliana HOM05D008458 ORTHO05D010628 1.3e-119 434.9 703 44.7
AT2G11010 Arabidopsis thaliana HOM05D008458 ORTHO05D010628 9.3e-118 428.7 636 44.3
AT3G32190 Arabidopsis thaliana HOM05D008458 ORTHO05D010628 7.4e-75 286.2 288 61.8
AT1G36100 Arabidopsis thaliana HOM05D008458 ORTHO05D010628 5.3e-73 280.0 162 85.8
AT5G35604 Arabidopsis thaliana HOM05D008458 ORTHO05D010628 5.5e-54 216.9 329 44.7
AT5G33806 Arabidopsis thaliana HOM05D008458 ORTHO05D010628 3.5e-48 197.6 239 49.8
AT3G32150 Arabidopsis thaliana HOM05D008458 ORTHO05D010628 7.8e-48 196.4 227 52.9
AL4G17450 Arabidopsis lyrata HOM05D008458 ORTHO05D010628 5.2e-44 183.7 288 42.0
AL8G10150 Arabidopsis lyrata HOM05D000327 ORTHO05D000218 5.8e-43 180.3 205 56.1
AT3G32200 Arabidopsis thaliana HOM05D008458 ORTHO05D010628 4.9e-42 177.2 133 73.7
CARHR115630 Cardamine hirsuta HOM05D008458 ORTHO05D010628 6.6e-39 166.8 218 39.4
CARHR184520 Cardamine hirsuta HOM05D008458 ORTHO05D010628 2.8e-29 134.8 188 39.4
AT3G33293 Arabidopsis thaliana HOM05D008458 ORTHO05D010628 1.7e-26 125.6 89 74.2
Carub.0007s3731 Capsella rubella HOM05D009492 ORTHO05D011693 2.2e-26 125.2 760 24.2
CARHR053560 Cardamine hirsuta HOM05D008458 ORTHO05D010628 3.7e-26 124.4 153 43.1
Carub.0007s3611 Capsella rubella HOM05D009492 ORTHO05D011693 1.1e-25 122.9 755 24.5
Carub.0008s0728 Capsella rubella HOM05D009492 ORTHO05D011693 9.2e-25 119.8 664 23.8
AT4G03830 Arabidopsis thaliana HOM05D009492 ORTHO05D011693 1.2e-24 119.4 371 28.6
Carub.0005s0956 Capsella rubella HOM05D009492 ORTHO05D011693 3.5e-24 117.9 190 35.8
CARHR035710 Cardamine hirsuta HOM05D008458 ORTHO05D010628 1.3e-23 115.9 178 36.0
CARHR118560 Cardamine hirsuta HOM05D008458 ORTHO05D010628 2.3e-23 115.2 122 49.2
CARHR174650 Cardamine hirsuta HOM05D008458 ORTHO05D010628 8.6e-23 113.2 143 41.3
Carub.0002s0916 Capsella rubella HOM05D009492 ORTHO05D011693 1.1e-22 112.8 346 30.1
Carub.0004s0672 Capsella rubella HOM05D009492 ORTHO05D011693 4.3e-22 110.9 345 29.0
Carub.0002s1048 Capsella rubella HOM05D009492 ORTHO05D011693 5.6e-22 110.5 328 29.9
AT3G33393 Arabidopsis thaliana HOM05D008458 ORTHO05D010628 1.2e-21 109.4 93 59.1
Carub.0006s2644 Capsella rubella HOM05D009492 ORTHO05D011693 3.6e-21 107.8 210 32.4
AL1G50390 Arabidopsis lyrata HOM05D009492 ORTHO05D011693 1.1e-20 106.3 402 27.1
Carub.0001s3424 Capsella rubella HOM05D009492 ORTHO05D011693 3.1e-20 104.8 338 26.3
BcaC04g23210 Brassica carinata HOM05D006121 ORTHO05D009559 1.5e-19 102.4 217 29.5
Carub.0002s0942 Capsella rubella HOM05D009492 ORTHO05D011693 1.5e-19 102.4 150 39.3
Carub.0007s3212 Capsella rubella HOM05D009492 ORTHO05D011693 2.0e-19 102.1 323 28.2
BcaC03g15130 Brassica carinata HOM05D006121 ORTHO05D009559 4.4e-19 100.9 239 29.3
Carub.0003s2742 Capsella rubella HOM05D009492 ORTHO05D011693 7.6e-19 100.1 166 35.5
AT4G08097 Arabidopsis thaliana HOM05D008458 ORTHO05D010628 9.9e-19 99.8 152 42.1
CARHR105800 Cardamine hirsuta HOM05D008458 ORTHO05D010628 1.7e-18 99.0 122 40.2
AT1G51172 Arabidopsis thaliana HOM05D009492 ORTHO05D011693 2.9e-18 98.2 371 26.7
Carub.0002s0975 Capsella rubella HOM05D009492 ORTHO05D011693 6.4e-18 97.1 147 37.4
AT2G15420 Arabidopsis thaliana HOM05D010629 ORTHO05D005680 5.4e-17 94.0 172 32.6
BcaC01g02132 Brassica carinata HOM05D006121 ORTHO05D009559 1.2e-16 92.8 207 28.5
BcaC07g37147 Brassica carinata HOM05D006121 ORTHO05D009559 2.1e-16 92.0 202 27.7
BcaC08g42951 Brassica carinata HOM05D006121 ORTHO05D009559 2.7e-16 91.7 169 30.8
BcaC05g27675 Brassica carinata HOM05D006121 ORTHO05D009559 4.6e-16 90.9 202 27.7
BcaC09g49745 Brassica carinata HOM05D006121 ORTHO05D009559 1.0e-15 89.7 200 28.5
BcaC03g16521 Brassica carinata HOM05D006121 ORTHO05D009559 2.3e-15 88.6 172 30.2
Carub.0108s0001 Capsella rubella HOM05D016834 ORTHO05D016863 3.0e-15 88.2 259 28.2
BcaC07g37897 Brassica carinata HOM05D006121 ORTHO05D009559 3.9e-15 87.8 206 28.6
Carub.0003s2904 Capsella rubella HOM05D006121 ORTHO05D009559 1.9e-14 85.5 685 21.6
CARHR181090 Cardamine hirsuta HOM05D008458 ORTHO05D010628 1.9e-14 85.5 90 50.0
Carub.0008s1221 Capsella rubella HOM05D016834 ORTHO05D016863 2.5e-14 85.1 259 27.0
Carub.0003s2394 Capsella rubella HOM05D016834 ORTHO05D016863 3.3e-14 84.7 289 27.7
Carub.0003s2886 Capsella rubella HOM05D016834 ORTHO05D016863 3.3e-14 84.7 289 27.7
AL2G23320 Arabidopsis lyrata HOM05D009492 ORTHO05D011693 4.3e-14 84.3 768 21.6
BcaC01g06835 Brassica carinata HOM05D006121 ORTHO05D009559 4.3e-14 84.3 159 30.2
BcaC03g16227 Brassica carinata HOM05D006121 ORTHO05D009559 5.6e-14 84.0 164 32.3
Carub.0007s3091 Capsella rubella HOM05D016834 ORTHO05D016863 5.6e-14 84.0 291 28.5
BcaC01g02238 Brassica carinata HOM05D006121 ORTHO05D009559 7.3e-14 83.6 181 29.3
BcaC09g49729 Brassica carinata HOM05D006121 ORTHO05D009559 9.6e-14 83.2 137 33.6
Carub.0073s0002 Capsella rubella HOM05D016834 ORTHO05D016863 2.1e-13 82.0 246 29.7
BcaC02g11248 Brassica carinata HOM05D006121 ORTHO05D009559 8.1e-13 80.1 187 27.3
BcaC01g05819 Brassica carinata HOM05D006121 ORTHO05D009559 2.4e-12 78.6 347 25.4
AT1G46696 Arabidopsis thaliana HOM05D009492 ORTHO05D011693 4.0e-12 77.8 173 29.5
BcaC03g17371 Brassica carinata HOM05D006121 ORTHO05D009559 5.3e-12 77.4 156 29.5
BcaC09g49299 Brassica carinata HOM05D006121 ORTHO05D009559 5.3e-12 77.4 159 28.9
Carub.0004s1788 Capsella rubella HOM05D009492 ORTHO05D011693 5.3e-12 77.4 742 22.0
AT1G20400 Arabidopsis thaliana HOM05D011598 ORTHO05D013181 6.9e-12 77.0 180 27.8
AL3G15920 Arabidopsis lyrata HOM05D011598 ORTHO05D013181 9.0e-12 76.6 211 27.5
BcaC04g21502 Brassica carinata HOM05D006121 ORTHO05D009559 9.0e-12 76.6 169 26.6
Sp4g04860 Schrenkiella parvula HOM05D010772 ORTHO05D005680 9.0e-12 76.6 166 28.9
Carub.0003s2830 Capsella rubella HOM05D009492 ORTHO05D011693 2.0e-11 75.5 177 28.2
AL1G53160 Arabidopsis lyrata HOM05D011598 ORTHO05D013181 2.6e-11 75.1 233 26.6
Carub.0007s2123 Capsella rubella HOM05D010629 ORTHO05D005680 4.4e-11 74.3 221 28.1
Carub.0002s1244 Capsella rubella HOM05D010629 ORTHO05D005680 5.8e-11 73.9 221 27.6
Carub.0006s2612 Capsella rubella HOM05D016834 ORTHO05D016863 5.8e-11 73.9 130 33.1
CARHR153510 Cardamine hirsuta HOM05D008458 ORTHO05D010628 7.6e-11 73.6 66 48.5
Carub.0006s0276 Capsella rubella HOM05D010629 ORTHO05D005680 9.9e-11 73.2 197 27.4
AL3G43600 Arabidopsis lyrata HOM05D010629 ORTHO05D005680 2.2e-10 72.0 174 25.9
BcaC05g27433 Brassica carinata HOM05D006121 ORTHO05D009559 2.9e-10 71.6 136 30.9
Carub.0005s0210 Capsella rubella HOM05D010629 ORTHO05D005680 3.8e-10 71.2 193 28.0
Carub.0353s0001 Capsella rubella HOM05D010629 ORTHO05D005680 3.8e-10 71.2 184 28.3
AL7G45790 Arabidopsis lyrata HOM05D011598 ORTHO05D013181 4.9e-10 70.9 172 29.7
Sp7g11540 Schrenkiella parvula HOM05D010529 ORTHO05D012528 6.4e-10 70.5 190 26.8
Carub.0009s0003 Capsella rubella HOM05D016834 ORTHO05D016863 1.1e-09 69.7 130 31.5
BcaC07g37903 Brassica carinata HOM05D006121 ORTHO05D009559 1.9e-09 68.9 241 27.4
Thhalv10023163m.g Eutrema salsugineum HOM05D010629 ORTHO05D016863 2.4e-09 68.6 106 32.1
Carub.0008s0719 Capsella rubella HOM05D009492 ORTHO05D011693 3.2e-09 68.2 129 31.8
CARHR150680 Cardamine hirsuta HOM05D008458 ORTHO05D010628 4.2e-09 67.8 63 52.4
AT5G38190 Arabidopsis thaliana HOM05D034490 ORTHO05D019745 1.2e-08 66.2 162 26.5
BcaC03g16371 Brassica carinata HOM05D006121 ORTHO05D009559 1.6e-08 65.9 177 28.2
CSS0040956 Camellia sinensis var. sinensis HOM05D035337 ORTHO05D000116 2.1e-08 65.5 154 33.1
CARHR181790 Cardamine hirsuta HOM05D008458 ORTHO05D010628 2.1e-08 65.5 63 49.2
AL3G49830 Arabidopsis lyrata HOM05D011598 ORTHO05D013181 2.7e-08 65.1 172 26.2
Carub.0002s1012 Capsella rubella HOM05D010629 ORTHO05D005680 4.6e-08 64.3 94 37.2
Carub.0003s2807 Capsella rubella HOM05D010629 ORTHO05D005680 4.6e-08 64.3 166 25.3
AT4G32200 Arabidopsis thaliana HOM05D003724 ORTHO05D004367 6.0e-08 63.9 210 26.7
BolC8t48644H Brassica oleracea HOM05D002078 ORTHO05D005680 6.0e-08 63.9 205 24.4
Carub.0004s1088 Capsella rubella HOM05D010629 ORTHO05D005680 1.3e-07 62.8 130 33.1
CARHR217200 Cardamine hirsuta HOM05D020629 ORTHO05D022218 1.3e-07 62.8 390 26.2
Carub.0005s0837 Capsella rubella HOM05D010629 ORTHO05D005680 1.7e-07 62.4 205 24.9
AT3G42060 Arabidopsis thaliana HOM05D010629 ORTHO05D005680 2.3e-07 62.0 193 24.4
Carub.0007s3050 Capsella rubella HOM05D010629 ORTHO05D005680 3.0e-07 61.6 166 24.7
BolC7t41498H Brassica oleracea HOM05D006121 ORTHO05D009559 3.9e-07 61.2 146 25.3
BolC3t20163H Brassica oleracea HOM05D006121 ORTHO05D009559 5.1e-07 60.8 76 38.2
CARHR104300 Cardamine hirsuta HOM05D008458 ORTHO05D010628 5.1e-07 60.8 153 30.1
A08p08190 Brassica napus HOM05D008596 ORTHO05D003268 6.6e-07 60.5 111 28.8
BcaC02g10377 Brassica carinata HOM05D002078 ORTHO05D005680 1.5e-06 59.3 185 27.6
A01p26930 Brassica napus HOM05D008596 ORTHO05D003268 1.5e-06 59.3 109 27.5
CSS0037614 Camellia sinensis var. sinensis HOM05D010739 ORTHO05D012209 1.5e-06 59.3 137 33.6
RcHm_v2.0_Chr2g0084191 Rosa chinensis HOM05D031301 ORTHO05D010628 2.5e-06 58.5 136 32.4
BcaC03g17686 Brassica carinata HOM05D002078 ORTHO05D005680 4.3e-06 57.8 122 29.5
A06p23500 Brassica napus HOM05D008596 ORTHO05D003268 4.3e-06 57.8 111 27.9
Carub.0006s2663 Capsella rubella HOM05D009492 ORTHO05D011693 7.3e-06 57.0 107 32.7


User provided reference genes

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