Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT5G30495 Arabidopsis thaliana HOM05D004696 ORTHO05D005645 4.0e-105 384.8 197 100.0
AL6G41010 Arabidopsis lyrata HOM05D004696 ORTHO05D005645 3.6e-98 361.7 197 93.9
CARHR185500 Cardamine hirsuta HOM05D004696 ORTHO05D005645 4.1e-86 321.6 197 83.2
AT1G54770 Arabidopsis thaliana HOM05D004696 ORTHO05D005645 9.2e-86 320.5 198 86.4
Carub.0002s0865 Capsella rubella HOM05D004696 ORTHO05D005645 2.7e-85 318.9 197 85.3
Sp2g19960 Schrenkiella parvula HOM05D004696 ORTHO05D005645 1.5e-80 303.1 197 76.6
BcaB04g19639 Brassica carinata HOM05D004696 ORTHO05D005645 9.2e-78 293.9 197 77.7
Thhalv10005420m.g Eutrema salsugineum HOM05D004696 ORTHO05D005645 5.1e-76 288.1 198 74.7
BcaC04g23715 Brassica carinata HOM05D004696 ORTHO05D005645 1.5e-75 286.6 197 74.1
Aa31LG2G12130 Aethionema arabicum HOM05D004696 ORTHO05D005645 9.6e-75 283.9 197 74.6
A09p05040 Brassica napus HOM05D004696 ORTHO05D005645 8.1e-74 280.8 197 74.1
BraA09t36143Z Brassica rapa HOM05D004696 ORTHO05D005645 1.8e-73 279.6 197 73.6
C09p05450 Brassica napus HOM05D004696 ORTHO05D005645 2.6e-72 275.8 197 72.6
BolC9t53474H Brassica oleracea HOM05D004696 ORTHO05D005645 7.6e-72 274.2 197 72.1
THA.LOC104827108 Tarenaya hassleriana HOM05D004696 ORTHO05D005645 6.9e-65 251.1 197 67.5
Cpa.g.sc146.25 Carica papaya HOM05D004696 ORTHO05D005645 2.4e-62 242.7 200 63.5
Cfa015727 Carpinus fangiana HOM05D004696 ORTHO05D005645 2.1e-61 239.6 199 62.3
Thecc.04G312600 Theobroma cacao HOM05D004696 ORTHO05D005645 3.5e-61 238.8 200 63.0
Haze_00771 Corylus avellana HOM05D004696 ORTHO05D005645 3.0e-60 235.7 199 61.8
Solyc05g053220.3 Solanum lycopersicum HOM05D004696 ORTHO05D005645 3.0e-60 235.7 199 63.8
Sopen05g031730 Solanum pennellii HOM05D004696 ORTHO05D005645 3.0e-60 235.7 199 63.8
PGSC0003DMG400027150 Solanum tuberosum HOM05D004696 ORTHO05D005645 8.7e-60 234.2 199 63.3
CAN.G305.38 Capsicum annuum HOM05D004696 ORTHO05D005645 2.5e-59 232.6 199 61.8
Gohir.A02G058200 Gossypium hirsutum HOM05D004696 ORTHO05D005645 9.6e-59 230.7 204 60.3
Duzib151G0078 Durio zibethinus HOM05D004696 ORTHO05D005645 1.6e-58 229.9 200 61.5
CiPaw.02G069300 Carya illinoinensis HOM05D004696 ORTHO05D005645 2.1e-58 229.6 199 60.3
Gorai.005G071900 Gossypium raimondii HOM05D004696 ORTHO05D005645 2.1e-58 229.6 204 59.8
Manes.11G020900 Manihot esculenta HOM05D004696 ORTHO05D005645 2.8e-58 229.2 199 60.8
TAR629G2307 Trochodendron aralioides HOM05D004696 ORTHO05D005645 4.8e-58 228.4 199 61.3
Atru.chr4.3144 Acer truncatum HOM05D004696 ORTHO05D005645 6.2e-58 228.0 195 60.5
Manes.03G211700 Manihot esculenta HOM05D004696 ORTHO05D005645 1.1e-57 227.3 199 60.3
Dinv29511 Davidia involucrata HOM05D004696 ORTHO05D005645 3.1e-57 225.7 199 58.8
Aqoxy4G02417 Aquilegia oxysepala HOM05D004696 ORTHO05D005645 6.9e-57 224.6 196 58.7
Gohir.D02G064000 Gossypium hirsutum HOM05D004696 ORTHO05D005645 6.9e-57 224.6 204 58.8
Ciclev10005920m.g Citrus clementina HOM05D004696 ORTHO05D005645 9.0e-57 224.2 201 58.7
TWI73G0566 Tripterygium wilfordii HOM05D004696 ORTHO05D005645 9.0e-57 224.2 199 60.3
CsaV3_6G008150 Cucumis sativus L. HOM05D004696 ORTHO05D005645 1.2e-56 223.8 201 58.7
Dinv18020 Davidia involucrata HOM05D004696 ORTHO05D005645 1.2e-56 223.8 199 61.8
GSVIVG01017685001 Vitis vinifera HOM05D004696 ORTHO05D005645 1.2e-56 223.8 199 60.3
Aqoxy5G04183 Aquilegia oxysepala HOM05D004696 ORTHO05D005645 2.6e-56 222.6 196 57.7
Eucgr.B03956 Eucalyptus grandis HOM05D004696 ORTHO05D005645 2.6e-56 222.6 199 59.3
FAN07G1680 Fragaria x ananassa HOM05D004696 ORTHO05D005645 5.8e-56 221.5 199 59.8
CSS0007787 Camellia sinensis var. sinensis HOM05D004696 ORTHO05D005645 1.3e-55 220.3 201 58.7
RcHm_v2.0_Chr4g0427441 Rosa chinensis HOM05D004696 ORTHO05D005645 1.3e-55 220.3 199 58.8
Sc17g0002920 Simmondsia chinensis HOM05D004696 ORTHO05D005645 2.2e-55 219.5 200 59.0
TWI09G0971 Tripterygium wilfordii HOM05D004696 ORTHO05D005645 4.9e-55 218.4 199 58.3
Lsat_1_v5_gn_1_39920 Lactuca sativa HOM05D004696 ORTHO05D005645 6.4e-55 218.0 199 57.8
PGR031G3538 Punica granatum HOM05D004696 ORTHO05D005645 6.4e-55 218.0 200 59.0
HanXRQChr09g0238571 Helianthus annuus HOM05D004696 ORTHO05D005645 8.4e-55 217.6 199 58.3
Sed0019137 Sechium edule HOM05D004696 ORTHO05D005645 1.1e-54 217.2 198 56.6
FvH4_4g21490 Fragaria vesca HOM05D004696 ORTHO05D005645 9.3e-54 214.2 199 57.3
Ah.06g192450 Amaranthus hybridus HOM05D004696 ORTHO05D005645 1.6e-53 213.4 198 55.1
FAN12G0616 Fragaria x ananassa HOM05D004696 ORTHO05D005645 1.6e-53 213.4 199 57.3
CANSAT78G0332 Cannabis sativa HOM05D004696 ORTHO05D005645 2.1e-53 213.0 197 58.4
Glyma.11G024900 Glycine max HOM05D004696 ORTHO05D005645 2.7e-53 212.6 196 55.6
Actinidia22921 Actinidia chinensis HOM05D004696 ORTHO05D005645 3.5e-53 212.2 198 58.1
Ah.16g105210 Amaranthus hybridus HOM05D004696 ORTHO05D005645 4.6e-53 211.8 198 55.1
Lsat_1_v5_gn_6_92581 Lactuca sativa HOM05D004696 ORTHO05D005645 6.0e-53 211.5 199 57.3
Migut.N00002 Erythranthe guttata HOM05D004696 ORTHO05D005645 3.0e-52 209.1 199 57.8
Lalb_Chr17g0338851 Lupinus albus HOM05D004696 ORTHO05D005645 3.0e-52 209.1 196 54.1
Glyma.14G125600 Glycine max HOM05D004696 ORTHO05D005645 3.9e-52 208.8 193 56.5
Psat7g133720 Pisum sativum HOM05D004696 ORTHO05D005645 3.9e-52 208.8 197 54.8
Prupe.1G105700 Prunus persica HOM05D004696 ORTHO05D005645 3.9e-52 208.8 199 58.3
Glyma.01G218300 Glycine max HOM05D004696 ORTHO05D005645 5.1e-52 208.4 196 55.1
Lj2g0021207 Lotus japonicus HOM05D004696 ORTHO05D005645 5.1e-52 208.4 198 54.5
Lalb_Chr10g0096421 Lupinus albus HOM05D004696 ORTHO05D005645 5.1e-52 208.4 197 55.3
MBI03_g01483_MAGBIO Magnolia biondii HOM05D004696 ORTHO05D005645 5.1e-52 208.4 186 55.9
vmacro08011 Vaccinium macrocarpon HOM05D004696 ORTHO05D005645 5.1e-52 208.4 211 55.9
VMungo0331G1167 Vigna mungo HOM05D004696 ORTHO05D005645 6.7e-52 208.0 196 54.1
EL10Ac4g08571 Beta vulgaris HOM05D004696 ORTHO05D005645 8.7e-52 207.6 193 57.5
Potri.010G002100 Populus trichocarpa HOM05D004696 ORTHO05D005645 8.7e-52 207.6 193 58.5
QL06p014174 Quercus lobata HOM05D004696 ORTHO05D005645 1.1e-51 207.2 208 54.8
Phvul.003G045400 Phaseolus vulgaris HOM05D004696 ORTHO05D005645 1.9e-51 206.5 196 54.1
Psat1g042400 Pisum sativum HOM05D004696 ORTHO05D005645 2.5e-51 206.1 197 54.3
MD13G1140700 Malus domestica HOM05D004696 ORTHO05D005645 4.3e-51 205.3 199 57.3
Oeu022705.1 Olea europaea HOM05D004696 ORTHO05D005645 4.3e-51 205.3 172 59.9
CDE06G2579 Ceratophyllum demersum HOM05D005139 ORTHO05D006125 9.6e-51 204.1 194 56.2
Sabra02G0114900 Salix brachista HOM05D004696 ORTHO05D005645 9.6e-51 204.1 194 58.2
arahy.Tifrunner.gnm1.ann1.61U0KE Arachis hypogaea HOM05D004696 ORTHO05D005645 2.1e-50 203.0 206 54.4
Phvul.010G140500 Phaseolus vulgaris HOM05D004696 ORTHO05D005645 2.1e-50 203.0 196 52.6
arahy.Tifrunner.gnm1.ann1.NQRV37 Arachis hypogaea HOM05D004696 ORTHO05D005645 3.7e-50 202.2 206 54.4
Potri.008G206400 Populus trichocarpa HOM05D004696 ORTHO05D005645 3.7e-50 202.2 195 58.5
MD07G1065600 Malus domestica HOM05D004696 ORTHO05D005645 4.8e-50 201.8 199 56.8
Medtr5g081850 Medicago truncatula HOM05D004696 ORTHO05D005645 8.1e-50 201.1 197 51.8
MD16G1136700 Malus domestica HOM05D004696 ORTHO05D005645 1.4e-49 200.3 199 56.8
ECA220G0002 Erigeron canadensis HOM05D004696 ORTHO05D005645 1.8e-49 199.9 185 56.2
Lj4g0004970 Lotus japonicus HOM05D004696 ORTHO05D005645 3.1e-49 199.1 198 53.0
arahy.Tifrunner.gnm1.ann1.BY2PXQ Arachis hypogaea HOM05D004696 ORTHO05D005645 5.3e-49 198.4 206 52.9
Cc03_g00150 Coffea canephora HOM05D004696 ORTHO05D005645 5.3e-49 198.4 211 55.0
AUR62020507 Chenopodium quinoa HOM05D004696 ORTHO05D005645 9.0e-49 197.6 189 55.0
Cc00_g15640 Coffea canephora HOM05D004696 ORTHO05D005645 2.0e-48 196.4 212 54.7
MSTRG.24614 Avicennia marina HOM05D004696 ORTHO05D005645 4.5e-48 195.3 191 55.5
Sabra08G0150400 Salix brachista HOM05D004696 ORTHO05D005645 7.6e-48 194.5 214 53.3
Sabra02G0116500 Salix brachista HOM05D004696 ORTHO05D005645 1.3e-47 193.7 213 52.6
Os02g0730500 Oryza sativa ssp. japonica HOM05D004696 ORTHO05D005645 1.7e-47 193.4 202 54.5
SGA_v2.0_scaffold49G18399 Striga asiatica HOM05D004696 ORTHO05D005645 2.5e-46 189.5 195 54.4
Nitab4.5_0008086g0030 Nicotiana tabacum HOM05D004696 ORTHO05D005645 3.2e-46 189.1 199 54.3
unitig_8.g2889 Utricularia gibba HOM05D004696 ORTHO05D005645 3.2e-46 189.1 187 56.7
Zm00001eb189970 Zea mays HOM05D004696 ORTHO05D005645 2.1e-45 186.4 199 50.8
TPR.G8061 Trifolium pratense HOM05D004696 ORTHO05D005645 2.7e-45 186.0 198 48.5
PSO782G4648 Papaver somniferum HOM05D004696 ORTHO05D005645 7.9e-45 184.5 189 52.4
Aqoxy3G02973 Aquilegia oxysepala HOM05D004696 ORTHO05D005645 1.0e-44 184.1 161 59.6
SalBow2G0725 Salvia bowleyana HOM05D001196 ORTHO05D005911 1.3e-44 183.7 196 54.1
PSO063G5897 Papaver somniferum HOM05D004696 ORTHO05D005645 3.0e-44 182.6 195 50.3
PSO478G3068 Papaver somniferum HOM05D004696 ORTHO05D005645 3.0e-44 182.6 189 51.9
Peaxi162Scf00164g00414 Petunia axillaris HOM05D004696 ORTHO05D005645 8.7e-44 181.0 198 52.0
ClCG06G002080 Citrullus lanatus HOM05D004696 ORTHO05D005645 2.5e-43 179.5 201 51.2
Rhsim04G0248200 Rhododendron simsii HOM05D004696 ORTHO05D005645 9.6e-43 177.6 198 52.0
Lj6C700T16 Lonicera japonica HOM05D004696 ORTHO05D005645 1.3e-42 177.2 199 53.3
Oeu037627.2 Olea europaea HOM05D004696 ORTHO05D005645 1.3e-42 177.2 286 39.9
PSO832G1751 Papaver somniferum HOM05D004696 ORTHO05D005645 2.8e-42 176.0 199 49.2
Hma1.2p1_2234F.1_g317690 Hydrangea macrophylla HOM05D004696 ORTHO05D000003 3.7e-42 175.6 260 42.7
AUR62015697 Chenopodium quinoa HOM05D004696 ORTHO05D005645 1.8e-41 173.3 178 51.7
arahy.Tifrunner.gnm1.ann1.09FGJA Arachis hypogaea HOM05D004696 ORTHO05D005645 5.8e-40 168.3 197 49.7
SGA_v2.0_scaffold69G23291 Striga asiatica HOM05D004696 ORTHO05D005645 1.1e-38 164.1 196 49.0
SEGI_16783 Sequoiadendron giganteum HOM05D004696 ORTHO05D005645 7.1e-38 161.4 178 48.3
MELO3C035238.2 Cucumis melo HOM05D004696 ORTHO05D005645 2.1e-37 159.8 169 50.3
SEGI_41631 Sequoiadendron giganteum HOM05D004696 ORTHO05D005645 2.1e-37 159.8 183 48.1
SHI04008 Sapria himalayana HOM05D004696 ORTHO05D005645 2.7e-37 159.5 163 53.4
ECA248G3148 Erigeron canadensis HOM05D004696 ORTHO05D005645 1.3e-36 157.1 186 48.9
Mapoly0084s0020 Marchantia polymorpha HOM05D004696 ORTHO05D005645 8.7e-36 154.5 180 50.0
Ca_05928_v3 Cicer arietinum L. HOM05D004696 ORTHO05D005645 1.5e-35 153.7 197 44.2
Actinidia01063 Actinidia chinensis HOM05D004696 ORTHO05D005645 3.3e-35 152.5 194 45.4
Ca_06214_v3 Cicer arietinum L. HOM05D004696 ORTHO05D005645 3.3e-35 152.5 199 44.2
Nn3g16891 Nelumbo nucifera HOM05D004696 ORTHO05D005645 6.3e-34 148.3 128 53.9
Nitab4.5_0000745g0120 Nicotiana tabacum HOM05D004696 ORTHO05D005645 6.3e-34 148.3 199 46.7
Pp3c7_450 Physcomitrium patens HOM05D004696 ORTHO05D005645 6.9e-33 144.8 190 46.3
SMO139G0013 Selaginella moellendorffii HOM05D004696 ORTHO05D005645 6.9e-33 144.8 158 51.9
BcaC04g19932 Brassica carinata HOM05D004696 ORTHO05D005645 4.5e-32 142.1 118 64.4
BolC9t57816H Brassica oleracea HOM05D004696 ORTHO05D005645 7.7e-32 141.4 118 64.4
RcHm_v2.0_Chr4g0427481 Rosa chinensis HOM05D004696 ORTHO05D005645 4.6e-29 132.1 103 59.2
CBR_g41139 Chara braunii HOM05D004696 ORTHO05D005645 1.3e-26 124.0 140 47.1
CSS0046364 Camellia sinensis var. sinensis HOM05D004696 ORTHO05D005645 3.4e-24 115.9 102 55.9
ATR1127G170 Amborella trichopoda HOM05D004696 ORTHO05D005645 5.9e-24 115.2 128 46.1
CSS0022818 Camellia sinensis var. sinensis HOM05D004696 ORTHO05D005645 8.5e-23 111.3 101 52.5
BcaB05g22696 Brassica carinata HOM05D004696 ORTHO05D005645 1.9e-22 110.2 130 51.5
ECA149G0001 Erigeron canadensis HOM05D004696 ORTHO05D005645 9.4e-22 107.8 189 40.7
HPP92_006011 Vanilla planifolia HOM05D004696 ORTHO05D005645 2.1e-21 106.7 124 39.5
MCO05G434 Micromonas commoda HOM05D004696 ORTHO05D005645 1.7e-18 97.1 151 41.7
Lj2g0010517 Lotus japonicus HOM05D004696 ORTHO05D005645 2.2e-18 96.7 147 44.2
AagrBONN_evm.TU.Sc2ySwM_368.1627 Anthoceros agrestis HOM05D004696 ORTHO05D005645 8.2e-18 94.7 123 42.3
Lj4g0014561 Lotus japonicus HOM05D004696 ORTHO05D005645 7.0e-17 91.7 100 52.0
COL.COLO4_34519 Corchorus olitorius HOM05D004696 ORTHO05D005645 9.1e-17 91.3 117 49.6
Lj4g0016234 Lotus japonicus HOM05D004696 ORTHO05D005645 3.5e-16 89.4 96 52.1
Zm00001eb253530 Zea mays HOM05D004696 ORTHO05D005645 1.7e-15 87.0 101 52.5
PRCOL_00000839 Prasinoderma coloniale HOM05D004696 ORTHO05D005645 2.2e-15 86.7 90 52.2
Cfa024688 Carpinus fangiana HOM05D004696 ORTHO05D005645 2.9e-15 86.3 142 39.4
Aqoxy5G04095 Aquilegia oxysepala HOM05D004696 ORTHO05D005645 1.5e-11 73.9 58 65.5
Lj2g0009432 Lotus japonicus HOM05D004696 ORTHO05D005645 8.2e-10 68.2 92 45.7
TAR371G0358 Trochodendron aralioides HOM05D004696 ORTHO05D005645 8.2e-10 68.2 103 46.6
Zm00001eb026470 Zea mays HOM05D004696 ORTHO05D021106 1.1e-09 67.8 65 52.3
Zm00001eb219180 Zea mays HOM05D004696 ORTHO05D005645 4.1e-09 65.9 65 52.3
EL10Ac1g01076 Beta vulgaris HOM05D004696 ORTHO05D005645 1.2e-08 64.3 56 58.9
CSS0030909 Camellia sinensis var. sinensis HOM05D004696 ORTHO05D005645 2.0e-08 63.5 102 40.2
AL7G43980 Arabidopsis lyrata HOM05D004696 ORTHO05D005645 2.6e-08 63.2 44 77.3
Cre03.g194150 Chlamydomonas reinhardtii HOM05D004696 ORTHO05D005645 3.5e-08 62.8 119 35.3


User provided reference genes

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