Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT5G28460 Arabidopsis thaliana HOM05D003900 ORTHO05D005009 1.2e-229 800.4 767 100.0
AT3G61520 Arabidopsis thaliana HOM05D003900 ORTHO05D005009 3.7e-223 778.9 767 98.6
AT5G28370 Arabidopsis thaliana HOM05D003900 ORTHO05D005009 3.8e-212 742.3 438 100.0
AL5G43880 Arabidopsis lyrata HOM05D003900 ORTHO05D005009 1.4e-201 707.2 767 91.3
Carub.0005s2821 Capsella rubella HOM05D003900 ORTHO05D005009 1.0e-185 654.4 768 89.5
CARHR171850 Cardamine hirsuta HOM05D003900 ORTHO05D005009 2.3e-180 636.7 762 82.3
Thhalv10022571m.g Eutrema salsugineum HOM05D003900 ORTHO05D005009 6.4e-175 618.6 767 79.5
BcaB02g07375 Brassica carinata HOM05D003900 ORTHO05D005009 1.3e-156 557.8 408 74.8
A07p25540 Brassica napus HOM05D003900 ORTHO05D005009 1.2e-154 551.2 409 70.4
BcaC08g45129 Brassica carinata HOM05D003900 ORTHO05D005009 1.4e-153 547.7 409 73.3
C06p27530 Brassica napus HOM05D003900 ORTHO05D005009 4.0e-153 546.2 409 73.8
BolC6t37920H Brassica oleracea HOM05D003900 ORTHO05D005009 5.2e-153 545.8 409 73.6
BraA07t30195Z Brassica rapa HOM05D003900 ORTHO05D005009 6.9e-153 545.4 410 69.5
Aa31LG10G15460 Aethionema arabicum HOM05D003900 ORTHO05D005009 3.5e-141 506.5 402 70.4
Sp4g28170 Schrenkiella parvula HOM05D003900 ORTHO05D005009 9.3e-126 455.3 413 62.5
Thhalv10001319m.g Eutrema salsugineum HOM05D003900 ORTHO05D005009 1.2e-125 454.9 412 63.3
Aa31LG1G27520 Aethionema arabicum HOM05D003900 ORTHO05D005009 2.2e-119 434.1 414 61.6
THA.LOC104817316 Tarenaya hassleriana HOM05D003900 ORTHO05D005009 1.1e-115 421.8 409 60.9
Atru.chr5.581 Acer truncatum HOM05D003900 ORTHO05D005009 5.9e-80 303.1 351 48.1
Atru.chr5.563 Acer truncatum HOM05D003900 ORTHO05D005009 1.3e-79 302.0 351 47.9
CARHR141390 Cardamine hirsuta HOM05D003900 ORTHO05D005009 1.1e-78 298.9 256 60.9
Thecc.01G352500 Theobroma cacao HOM05D003900 ORTHO05D005009 4.0e-76 290.4 343 46.6
Gohir.D12G110200 Gossypium hirsutum HOM05D003900 ORTHO05D005009 1.2e-75 288.9 369 42.5
Gorai.008G119500 Gossypium raimondii HOM05D003900 ORTHO05D005009 1.5e-75 288.5 369 42.8
Gohir.A12G106900 Gossypium hirsutum HOM05D003900 ORTHO05D005009 3.7e-74 283.9 374 42.0
Duzib138G1643 Durio zibethinus HOM05D003900 ORTHO05D005009 9.2e-73 279.3 379 45.9
QL04p055515 Quercus lobata HOM05D003900 ORTHO05D005009 2.8e-69 267.7 323 47.7
Prupe.2G177500 Prunus persica HOM05D003900 ORTHO05D005009 6.1e-69 266.5 367 41.4
Dinv43863 Davidia involucrata HOM05D003900 ORTHO05D005009 4.0e-68 263.8 372 43.0
Sopen01g038900 Solanum pennellii HOM05D003900 ORTHO05D005009 1.5e-67 261.9 351 43.6
Solyc01g095110.4 Solanum lycopersicum HOM05D003900 ORTHO05D005009 2.0e-67 261.5 395 45.3
PGSC0003DMG400000195 Solanum tuberosum HOM05D003900 ORTHO05D005009 1.7e-66 258.5 346 43.1
CiPaw.01G067100 Carya illinoinensis HOM05D003900 ORTHO05D005009 2.9e-66 257.7 377 40.3
Manes.05G029400 Manihot esculenta HOM05D003900 ORTHO05D005009 4.9e-66 256.9 366 42.1
CiPaw.01G067200 Carya illinoinensis HOM05D003900 ORTHO05D005009 8.3e-66 256.1 338 41.7
CiPaw.01G067500 Carya illinoinensis HOM05D003900 ORTHO05D005009 8.3e-66 256.1 372 41.1
Nitab4.5_0010695g0010 Nicotiana tabacum HOM05D003900 ORTHO05D005009 8.3e-66 256.1 345 42.9
CiPaw.01G066800 Carya illinoinensis HOM05D003900 ORTHO05D005009 2.4e-65 254.6 372 40.3
RcHm_v2.0_Chr7g0228211 Rosa chinensis HOM05D003900 ORTHO05D005009 2.4e-65 254.6 321 43.0
CSS0000093 Camellia sinensis var. sinensis HOM05D003900 ORTHO05D005009 4.1e-65 253.8 322 43.8
CSS0016355 Camellia sinensis var. sinensis HOM05D003900 ORTHO05D005009 4.1e-65 253.8 322 43.8
CiPaw.01G067400 Carya illinoinensis HOM05D003900 ORTHO05D005009 4.1e-65 253.8 321 43.3
TWI23G0979 Tripterygium wilfordii HOM05D003900 ORTHO05D005009 5.4e-65 253.4 323 44.9
Haze_15564 Corylus avellana HOM05D003900 ORTHO05D005009 1.2e-64 252.3 342 44.4
Duzib133G1046 Durio zibethinus HOM05D003900 ORTHO05D005009 2.7e-64 251.1 372 39.5
Potri.014G090400 Populus trichocarpa HOM05D003900 ORTHO05D005009 4.6e-64 250.4 373 40.2
CAN.G78.130 Capsicum annuum HOM05D003900 ORTHO05D005009 6.0e-64 250.0 340 42.4
Sc01g0003220 Simmondsia chinensis HOM05D003900 ORTHO05D005009 6.0e-64 250.0 326 43.3
CiPaw.01G067300 Carya illinoinensis HOM05D003900 ORTHO05D005009 7.8e-64 249.6 372 39.2
GSVIVG01026966001 Vitis vinifera HOM05D003900 ORTHO05D005009 2.3e-63 248.1 279 48.7
Nitab4.5_0000915g0110 Nicotiana tabacum HOM05D003900 ORTHO05D005009 3.9e-63 247.3 345 42.0
CiPaw.01G066600 Carya illinoinensis HOM05D003900 ORTHO05D005009 6.6e-63 246.5 290 45.5
Manes.01G252300 Manihot esculenta HOM05D003900 ORTHO05D005009 6.6e-63 246.5 414 42.5
RcHm_v2.0_Chr1g0357681 Rosa chinensis HOM05D003900 ORTHO05D005009 1.1e-62 245.7 335 41.5
Sabra14G0065500 Salix brachista HOM05D003900 ORTHO05D005009 2.5e-62 244.6 372 39.5
MD07G1131300 Malus domestica HOM05D003900 ORTHO05D005009 3.3e-62 244.2 364 42.3
Peaxi162Scf00020g00155 Petunia axillaris HOM05D003900 ORTHO05D005009 2.1e-61 241.5 320 42.8
Cc02_g38560 Coffea canephora HOM05D003900 ORTHO05D005009 2.8e-61 241.1 346 40.8
Lj7C507T1 Lonicera japonica HOM05D003900 ORTHO05D005009 1.1e-60 239.2 411 37.2
COL.COLO4_12777 Corchorus olitorius HOM05D003900 ORTHO05D005009 1.8e-60 238.4 293 45.1
Rhsim07G0010500 Rhododendron simsii HOM05D003900 ORTHO05D005009 2.3e-60 238.0 354 41.0
TAR629G0263 Trochodendron aralioides HOM05D003900 ORTHO05D005009 4.0e-60 237.3 347 41.2
FvH4_5g32150 Fragaria vesca HOM05D003900 ORTHO05D005009 6.8e-60 236.5 332 39.5
FvH4_5g03011 Fragaria vesca HOM05D003900 ORTHO05D005009 3.4e-59 234.2 314 41.4
Eucgr.E00097 Eucalyptus grandis HOM05D003900 ORTHO05D005009 1.1e-57 229.2 362 37.8
FAN04G0755 Fragaria x ananassa HOM05D003900 ORTHO05D005009 1.1e-57 229.2 324 39.8
vmacro13229 Vaccinium macrocarpon HOM05D003900 ORTHO05D005009 1.1e-57 229.2 325 42.8
AUR62004412 Chenopodium quinoa HOM05D003900 ORTHO05D005009 2.4e-57 228.0 360 38.6
CANSAT56G3111 Cannabis sativa HOM05D003900 ORTHO05D005009 3.2e-57 227.6 365 38.4
Migut.B01798 Erythranthe guttata HOM05D003900 ORTHO05D005009 2.7e-56 224.6 342 40.4
FvH4_7g15360 Fragaria vesca HOM05D003900 ORTHO05D005009 8.6e-55 219.5 309 40.8
FAN03G2211 Fragaria x ananassa HOM05D003900 ORTHO05D005009 1.9e-54 218.4 309 39.5
EL10Ac1g00355 Beta vulgaris HOM05D003900 ORTHO05D005009 7.3e-54 216.5 333 40.8
FAN10G3614 Fragaria x ananassa HOM05D003900 ORTHO05D005009 1.4e-52 212.2 312 38.1
AUR62022618 Chenopodium quinoa HOM05D003900 ORTHO05D005009 2.0e-51 208.4 362 37.3
SGA_v2.0_scaffold4G02283 Striga asiatica HOM05D003900 ORTHO05D005009 3.4e-51 207.6 341 37.8
Nn1g01685 Nelumbo nucifera HOM05D003900 ORTHO05D005009 4.4e-51 207.2 287 40.8
Ah.15g096610 Amaranthus hybridus HOM05D003900 ORTHO05D005009 5.8e-51 206.8 317 39.1
HanXRQChr04g0120801 Helianthus annuus HOM05D003900 ORTHO05D005009 2.2e-50 204.9 339 37.8
MD01G1071400 Malus domestica HOM05D003900 ORTHO05D005009 2.2e-50 204.9 226 49.1
Ciclev10019067m.g Citrus clementina HOM05D003900 ORTHO05D005009 6.4e-50 203.4 364 37.9
FAN06G2614 Fragaria x ananassa HOM05D003900 ORTHO05D005009 1.9e-49 201.8 258 42.6
SalBow3G3666 Salvia bowleyana HOM05D003900 ORTHO05D005009 1.6e-48 198.7 340 38.2
arahy.Tifrunner.gnm1.ann1.U9H0N8 Arachis hypogaea HOM05D003900 ORTHO05D005009 2.1e-48 198.4 349 37.0
FAN06G4981 Fragaria x ananassa HOM05D003900 ORTHO05D005009 2.1e-48 198.4 258 42.2
arahy.Tifrunner.gnm1.ann1.K45FBX Arachis hypogaea HOM05D003900 ORTHO05D005009 2.7e-48 198.0 349 36.7
VMungo0251G1173 Vigna mungo HOM05D003900 ORTHO05D005009 7.8e-48 196.4 333 34.8
Phvul.002G326200 Phaseolus vulgaris HOM05D003900 ORTHO05D005009 8.6e-47 193.0 329 35.6
FAN06G0440 Fragaria x ananassa HOM05D003900 ORTHO05D005009 1.5e-46 192.2 257 41.2
Actinidia20162 Actinidia chinensis HOM05D003900 ORTHO05D005009 2.5e-46 191.4 202 48.5
Lsat_1_v5_gn_7_2720 Lactuca sativa HOM05D003900 ORTHO05D005009 2.5e-46 191.4 362 37.0
Lalb_Chr04g0259301 Lupinus albus HOM05D003900 ORTHO05D005009 9.5e-46 189.5 339 36.9
Dinv32521 Davidia involucrata HOM05D003900 ORTHO05D005009 1.2e-45 189.1 246 42.7
Sed0017189 Sechium edule HOM05D003900 ORTHO05D005009 1.2e-45 189.1 209 45.0
FAN01G0431 Fragaria x ananassa HOM05D003900 ORTHO05D005009 1.6e-45 188.7 275 37.8
Glyma.16G031800 Glycine max HOM05D003900 ORTHO05D005009 2.1e-45 188.3 317 36.6
PGR142G0969 Punica granatum HOM05D003900 ORTHO05D005009 4.7e-45 187.2 342 34.2
Lj4g0005982 Lotus japonicus HOM05D003900 ORTHO05D005009 6.2e-45 186.8 355 35.8
CsaV3_7G025780 Cucumis sativus L. HOM05D003900 ORTHO05D005009 5.2e-44 183.7 208 45.2
ClCG09G009150 Citrullus lanatus HOM05D003900 ORTHO05D005009 2.6e-43 181.4 208 42.8
MBI11_g19575_MAGBIO Magnolia biondii HOM05D003900 ORTHO05D005009 5.8e-43 180.3 305 35.7
Cfa003873 Carpinus fangiana HOM05D003900 ORTHO05D005009 7.6e-43 179.9 359 35.7
RcHm_v2.0_Chr3g0468501 Rosa chinensis HOM05D003900 ORTHO05D005009 1.7e-42 178.7 306 37.3
MELO3C029134.2 Cucumis melo HOM05D003900 ORTHO05D005009 4.9e-42 177.2 208 43.8
Medtr8g098755 Medicago truncatula HOM05D003900 ORTHO05D005009 5.6e-38 163.7 195 42.6
FAN10G1060 Fragaria x ananassa HOM05D003900 ORTHO05D005009 2.8e-37 161.4 312 33.3
Oeu015216.1 Olea europaea HOM05D003900 ORTHO05D005009 4.7e-37 160.6 194 44.3
Psat7g005640 Pisum sativum HOM05D003900 ORTHO05D005009 1.8e-36 158.7 195 41.5
TPR.G2949 Trifolium pratense HOM05D003900 ORTHO05D005009 2.4e-36 158.3 195 42.6
DCAR_025213 Daucus carota HOM05D003900 ORTHO05D005009 1.2e-35 156.0 398 36.2
PSO266G0010 Papaver somniferum HOM05D003900 ORTHO05D005009 2.6e-35 154.8 221 34.8
PSO384G0446 Papaver somniferum HOM05D003900 ORTHO05D005009 2.9e-34 151.4 248 32.7
ECA236G1505 Erigeron canadensis HOM05D003900 ORTHO05D005009 3.8e-34 151.0 214 41.1
FAN18G4460 Fragaria x ananassa HOM05D003900 ORTHO05D005009 8.7e-31 139.8 217 36.9
RcHm_v2.0_Chr5g0017031 Rosa chinensis HOM05D003900 ORTHO05D005009 8.7e-31 139.8 151 47.0
CDE10G0308 Ceratophyllum demersum HOM05D003834 ORTHO05D004483 7.3e-30 136.7 268 31.0
ATR0721G158 Amborella trichopoda HOM05D003900 ORTHO05D005009 1.9e-25 122.1 237 34.2
CARHR141380 Cardamine hirsuta HOM05D003900 ORTHO05D005009 9.3e-25 119.8 123 69.1
Aqoxy7G01955 Aquilegia oxysepala HOM05D003900 ORTHO05D005009 1.6e-24 119.0 404 27.2
FAN18G1403 Fragaria x ananassa HOM05D003900 ORTHO05D005009 8.7e-23 113.2 96 53.1
MBI11_g19576_MAGBIO Magnolia biondii HOM05D003900 ORTHO05D005009 8.7e-23 113.2 253 29.6
HPP92_011504 Vanilla planifolia HOM05D003900 ORTHO05D005009 1.5e-22 112.5 320 28.4
CAN.G853.45 Capsicum annuum HOM05D003900 ORTHO05D005009 5.6e-22 110.5 149 43.0
Ca_17228_v3 Cicer arietinum L. HOM05D000113 ORTHO05D005009 3.1e-20 104.8 206 31.1
RcHm_v2.0_Chr7g0228291 Rosa chinensis HOM05D003900 ORTHO05D005009 6.9e-20 103.6 86 58.1
Medtr3g088810 Medicago truncatula HOM05D003900 ORTHO05D005009 5.8e-19 100.5 123 43.1
CAN.G874.71 Capsicum annuum HOM05D003900 ORTHO05D005009 1.7e-18 99.0 116 41.4
CAN.G430.2 Capsicum annuum HOM05D003900 ORTHO05D005009 4.2e-17 94.4 117 46.2
VMungo0251G0997 Vigna mungo HOM05D003900 ORTHO05D005009 4.2e-17 94.4 165 31.5
SEGI_18390 Sequoiadendron giganteum HOM05D003900 ORTHO05D005009 5.6e-14 84.0 210 27.6
CAN.G460.4 Capsicum annuum HOM05D003900 ORTHO05D005009 1.3e-13 82.8 101 44.6
CAN.G1005.1 Capsicum annuum HOM05D003900 ORTHO05D005009 3.7e-13 81.3 106 44.3
SEGI_08205 Sequoiadendron giganteum HOM05D003900 ORTHO05D005009 2.4e-12 78.6 85 43.5
SEGI_22559 Sequoiadendron giganteum HOM05D003900 ORTHO05D005009 6.9e-12 77.0 83 43.4
SEGI_36720 Sequoiadendron giganteum HOM05D003900 ORTHO05D005009 6.9e-12 77.0 228 28.9
Aqoxy4G00899 Aquilegia oxysepala HOM05D003900 ORTHO05D005009 5.8e-11 73.9 184 33.2
SEGI_03438 Sequoiadendron giganteum HOM05D003900 ORTHO05D005009 2.2e-10 72.0 91 41.8
Sopen02g027760 Solanum pennellii HOM05D007700 ORTHO05D009669 2.2e-10 72.0 161 25.5
PGSC0003DMG400040241 Solanum tuberosum HOM05D007700 ORTHO05D009669 2.2e-10 72.0 180 24.4
Thhalv10022683m.g Eutrema salsugineum HOM05D007700 ORTHO05D009669 3.8e-10 71.2 182 25.3
SEGI_28461 Sequoiadendron giganteum HOM05D000004 ORTHO05D000002 2.5e-09 68.6 229 27.1
BcaB07g31715 Brassica carinata HOM05D007700 ORTHO05D009669 9.3e-09 66.6 152 27.0
PSO170G6018 Papaver somniferum HOM05D007340 ORTHO05D008979 2.1e-08 65.5 178 24.2
Atru.BG.208.p Acer truncatum HOM05D000424 ORTHO05D000355 7.9e-08 63.5 115 31.3
CAN.G1417.4 Capsicum annuum HOM05D003900 ORTHO05D005009 1.0e-07 63.2 66 45.5
CAN.G609.3 Capsicum annuum HOM05D003900 ORTHO05D005009 1.3e-07 62.8 56 58.9
Cpa.g.sc64.144 Carica papaya HOM05D000424 ORTHO05D000355 1.3e-07 62.8 115 27.0
VMungo1127G1354 Vigna mungo HOM05D003900 ORTHO05D005009 1.3e-07 62.8 221 26.2
Zm00001eb280170 Zea mays HOM05D003900 ORTHO05D005009 1.8e-07 62.4 125 32.8
MBI05_g43154_MAGBIO Magnolia biondii HOM05D007700 ORTHO05D009669 2.3e-07 62.0 146 28.1
Nn6g31772 Nelumbo nucifera HOM05D007700 ORTHO05D009669 6.7e-07 60.5 147 27.9
Sabra05G0085500 Salix brachista HOM05D007700 ORTHO05D009669 6.7e-07 60.5 187 22.5
Thecc.01G008500 Theobroma cacao HOM05D007700 ORTHO05D009669 6.7e-07 60.5 152 27.0
Lj2P490T20 Lonicera japonica HOM05D007700 ORTHO05D009669 1.1e-06 59.7 152 24.3
SEGI_07919 Sequoiadendron giganteum HOM05D003900 ORTHO05D005009 1.5e-06 59.3 66 39.4
Lj3g0022870 Lotus japonicus HOM05D007700 ORTHO05D009669 2.5e-06 58.5 149 26.2
CAN.G1005.2 Capsicum annuum HOM05D003900 ORTHO05D005009 3.3e-06 58.2 55 56.4
PSO229G0164 Papaver somniferum HOM05D000162 ORTHO05D000090 3.3e-06 58.2 164 29.9
MELO3C007960.2 Cucumis melo HOM05D007700 ORTHO05D009669 4.3e-06 57.8 169 22.5
Aqoxy7G03291 Aquilegia oxysepala HOM05D003900 ORTHO05D016547 5.7e-06 57.4 135 31.1
Cc02_g34450 Coffea canephora HOM05D000162 ORTHO05D000090 5.7e-06 57.4 159 27.7
Haze_15114 Corylus avellana HOM05D000891 ORTHO05D000761 5.7e-06 57.4 203 20.7
FAN08G3007 Fragaria x ananassa HOM05D003900 ORTHO05D005009 5.7e-06 57.4 45 57.8
Aqoxy3G00090 Aquilegia oxysepala HOM05D006707 ORTHO05D008243 9.7e-06 56.6 90 35.6
SEGI_07366 Sequoiadendron giganteum HOM05D003900 ORTHO05D005009 9.7e-06 56.6 78 37.2
SEGI_34583 Sequoiadendron giganteum HOM05D003900 ORTHO05D005009 9.7e-06 56.6 78 37.2


User provided reference genes

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