Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT5G28442 Arabidopsis thaliana HOM05D004297 ORTHO05D005213 3.2e-43 177.9 85 100.0
AT5G28350 Arabidopsis thaliana HOM05D004297 ORTHO05D005213 5.6e-32 140.6 74 93.2
BcaC07g40648 Brassica carinata HOM05D004297 ORTHO05D005213 6.2e-31 137.1 74 89.2
A09p53530 Brassica napus HOM05D004297 ORTHO05D005213 6.2e-31 137.1 74 89.2
C08p36360 Brassica napus HOM05D004297 ORTHO05D005213 6.2e-31 137.1 74 89.2
BolC8t51219H Brassica oleracea HOM05D004297 ORTHO05D005213 6.2e-31 137.1 74 89.2
BraA09t40777Z Brassica rapa HOM05D004297 ORTHO05D005213 6.2e-31 137.1 74 89.2
AL5G43780 Arabidopsis lyrata HOM05D004297 ORTHO05D005213 1.1e-30 136.3 74 90.5
AL5G43840 Arabidopsis lyrata HOM05D004297 ORTHO05D005213 1.1e-30 136.3 74 90.5
BcaC07g42689 Brassica carinata HOM05D004297 ORTHO05D005213 1.8e-30 135.6 74 87.8
Thhalv10005756m.g Eutrema salsugineum HOM05D004297 ORTHO05D005213 9.0e-30 133.3 74 89.2
Sp5g01920 Schrenkiella parvula HOM05D004297 ORTHO05D005213 2.6e-29 131.7 74 87.8
Carub.0005s2817 Capsella rubella HOM05D004297 ORTHO05D005213 3.4e-29 131.3 74 87.8
AT3G61480 Arabidopsis thaliana HOM05D004297 ORTHO05D005213 1.3e-28 129.4 74 90.5
THA.LOC104817308 Tarenaya hassleriana HOM05D004297 ORTHO05D005213 1.3e-28 129.4 74 83.8
Aa31LG1G27480 Aethionema arabicum HOM05D004297 ORTHO05D005213 1.2e-26 122.9 74 81.1
CiPaw.02G033500 Carya illinoinensis HOM05D004297 ORTHO05D005213 1.9e-24 115.5 74 77.0
MD11G1239500 Malus domestica HOM05D004297 ORTHO05D005213 2.5e-24 115.2 74 74.3
Duzib138G1153 Durio zibethinus HOM05D004297 ORTHO05D005213 3.3e-24 114.8 74 77.0
TAR636G0349 Trochodendron aralioides HOM05D004297 ORTHO05D005213 4.3e-24 114.4 74 73.0
Cfa003893 Carpinus fangiana HOM05D004297 ORTHO05D005213 5.6e-24 114.0 74 74.3
Haze_15540 Corylus avellana HOM05D004297 ORTHO05D005213 5.6e-24 114.0 74 74.3
Lj1g0026001 Lotus japonicus HOM05D004297 ORTHO05D005213 5.6e-24 114.0 74 75.7
Prupe.2G174200 Prunus persica HOM05D004297 ORTHO05D005213 7.4e-24 113.6 74 74.3
RcHm_v2.0_Chr7g0221211 Rosa chinensis HOM05D004297 ORTHO05D005213 7.4e-24 113.6 74 75.7
CSS0008006 Camellia sinensis var. sinensis HOM05D004297 ORTHO05D005213 9.6e-24 113.2 74 71.6
FAN13G2415 Fragaria x ananassa HOM05D004297 ORTHO05D005213 1.6e-23 112.5 74 74.3
FAN08G3284 Fragaria x ananassa HOM05D004297 ORTHO05D005213 2.1e-23 112.1 74 74.3
Nn6g33322 Nelumbo nucifera HOM05D004297 ORTHO05D005213 2.1e-23 112.1 74 71.6
Thecc.01G355600 Theobroma cacao HOM05D004297 ORTHO05D005213 2.8e-23 111.7 74 74.3
Cpa.g.sc11.37 Carica papaya HOM05D004297 ORTHO05D005213 3.7e-23 111.3 74 74.3
Manes.01G254400 Manihot esculenta HOM05D004297 ORTHO05D005213 3.7e-23 111.3 74 73.0
Glyma.18G235800 Glycine max HOM05D004297 ORTHO05D005213 4.8e-23 110.9 74 73.0
TAR629G2795 Trochodendron aralioides HOM05D004297 ORTHO05D005213 4.8e-23 110.9 74 70.3
vmacro13256 Vaccinium macrocarpon HOM05D004297 ORTHO05D005213 6.2e-23 110.5 74 68.9
vmacro23481 Vaccinium macrocarpon HOM05D004297 ORTHO05D005213 6.2e-23 110.5 74 68.9
CARHR057240 Cardamine hirsuta HOM05D004297 ORTHO05D005213 8.2e-23 110.2 66 78.8
FvH4_5g28900 Fragaria vesca HOM05D004297 ORTHO05D005213 8.2e-23 110.2 74 73.0
FAN18G0188 Fragaria x ananassa HOM05D004297 ORTHO05D005213 8.2e-23 110.2 74 73.0
VMungo1383G1290 Vigna mungo HOM05D004297 ORTHO05D005213 8.2e-23 110.2 74 71.6
CANSAT56G3337 Cannabis sativa HOM05D004297 ORTHO05D005213 1.1e-22 109.8 74 73.0
DCAR_006941 Daucus carota HOM05D004297 ORTHO05D005213 1.1e-22 109.8 74 70.3
Sabra14G0063700 Salix brachista HOM05D004297 ORTHO05D005213 1.1e-22 109.8 74 70.3
Duzib133G0964 Durio zibethinus HOM05D004297 ORTHO05D005213 1.4e-22 109.4 74 73.0
Lalb_Chr03g0038271 Lupinus albus HOM05D004297 ORTHO05D005213 1.4e-22 109.4 74 71.6
TPR.G37786 Trifolium pratense HOM05D004297 ORTHO05D005213 1.4e-22 109.4 74 71.6
Actinidia20884 Actinidia chinensis HOM05D004297 ORTHO05D005213 1.8e-22 109.0 74 67.6
HanXRQChr04g0121341 Helianthus annuus HOM05D004297 ORTHO05D005213 1.8e-22 109.0 74 70.3
Peaxi162Scf00020g01027 Petunia axillaris HOM05D004297 ORTHO05D005213 1.8e-22 109.0 73 71.2
Potri.002G162000 Populus trichocarpa HOM05D004297 ORTHO05D005213 1.8e-22 109.0 74 71.6
CsaV3_6G000810 Cucumis sativus L. HOM05D004297 ORTHO05D005213 2.4e-22 108.6 74 68.9
Rhsim07G0012700 Rhododendron simsii HOM05D004297 ORTHO05D005213 2.4e-22 108.6 74 67.6
Atru.chr5.535 Acer truncatum HOM05D004297 ORTHO05D005213 3.1e-22 108.2 74 68.9
Solyc01g094880.3 Solanum lycopersicum HOM05D004297 ORTHO05D005213 3.1e-22 108.2 74 70.3
MSTRG.17286 Avicennia marina HOM05D004297 ORTHO05D005213 4.0e-22 107.8 74 70.3
Ciclev10018597m.g Citrus clementina HOM05D004297 ORTHO05D005213 4.0e-22 107.8 74 67.6
Lsat_1_v5_gn_7_3220 Lactuca sativa HOM05D004297 ORTHO05D005213 4.0e-22 107.8 74 68.9
CDE04G2307 Ceratophyllum demersum HOM05D004297 ORTHO05D005213 5.3e-22 107.5 74 67.6
ClCG06G003500 Citrullus lanatus HOM05D004297 ORTHO05D005213 5.3e-22 107.5 74 67.6
Hund27256 Selenicereus undatus HOM05D004297 ORTHO05D005213 5.3e-22 107.5 74 68.9
Actinidia10047 Actinidia chinensis HOM05D004297 ORTHO05D005213 6.9e-22 107.1 74 66.2
ATR0661G292 Amborella trichopoda HOM05D004297 ORTHO05D005213 6.9e-22 107.1 74 68.9
CAN.G78.102 Capsicum annuum HOM05D004297 ORTHO05D005213 6.9e-22 107.1 74 70.3
Migut.B01779 Erythranthe guttata HOM05D004297 ORTHO05D005213 6.9e-22 107.1 74 70.3
SGA_v2.0_scaffold78G25411 Striga asiatica HOM05D004297 ORTHO05D005213 6.9e-22 107.1 74 71.6
Glyma.09G256700 Glycine max HOM05D004297 ORTHO05D005213 9.0e-22 106.7 73 72.6
Medtr7g078170 Medicago truncatula HOM05D004297 ORTHO05D005213 9.0e-22 106.7 74 73.0
Sopen01g038660 Solanum pennellii HOM05D004297 ORTHO05D005213 9.0e-22 106.7 74 68.9
EL10Ac1g00379 Beta vulgaris HOM05D004297 ORTHO05D005213 1.5e-21 105.9 74 66.2
Eucgr.E00109 Eucalyptus grandis HOM05D004297 ORTHO05D005213 1.5e-21 105.9 74 73.0
Oeu036598.1 Olea europaea HOM05D004297 ORTHO05D005213 1.5e-21 105.9 74 70.3
PGR042G3632 Punica granatum HOM05D004297 ORTHO05D005213 1.5e-21 105.9 74 71.6
arahy.Tifrunner.gnm1.ann1.0F1BT2 Arachis hypogaea HOM05D004297 ORTHO05D005213 2.0e-21 105.5 74 70.3
arahy.Tifrunner.gnm1.ann1.553FBT Arachis hypogaea HOM05D004297 ORTHO05D005213 2.0e-21 105.5 74 70.3
Dinv43843 Davidia involucrata HOM05D004297 ORTHO05D005213 2.0e-21 105.5 74 68.9
PSO063G5582 Papaver somniferum HOM05D004297 ORTHO05D005213 2.0e-21 105.5 74 66.2
Sed0013986 Sechium edule HOM05D004297 ORTHO05D005213 2.0e-21 105.5 74 68.9
Sc23g0002730 Simmondsia chinensis HOM05D004297 ORTHO05D005213 2.0e-21 105.5 74 68.9
SalBow3G3037 Salvia bowleyana HOM05D004297 ORTHO05D005213 2.6e-21 105.1 74 67.6
ECA236G0245 Erigeron canadensis HOM05D004297 ORTHO05D005213 3.4e-21 104.8 74 67.6
Gohir.D07G146700 Gossypium hirsutum HOM05D004297 ORTHO05D005213 3.4e-21 104.8 74 71.6
COL.COLO4_12743 Corchorus olitorius HOM05D004297 ORTHO05D005213 4.5e-21 104.4 72 73.6
MELO3C021189.2 Cucumis melo HOM05D004297 ORTHO05D005213 4.5e-21 104.4 72 68.1
Gorai.001G159200 Gossypium raimondii HOM05D004297 ORTHO05D005213 4.5e-21 104.4 74 70.3
QL04p054287 Quercus lobata HOM05D004297 ORTHO05D005213 5.8e-21 104.0 74 70.3
AUR62004390 Chenopodium quinoa HOM05D004297 ORTHO05D005213 1.3e-20 102.8 74 66.2
AUR62022597 Chenopodium quinoa HOM05D004297 ORTHO05D005213 1.3e-20 102.8 74 66.2
Lj9C586G6 Lonicera japonica HOM05D004297 ORTHO05D005213 1.3e-20 102.8 74 67.6
Aqoxy5G04078 Aquilegia oxysepala HOM05D004297 ORTHO05D005213 1.7e-20 102.4 74 70.3
Potri.014G087900 Populus trichocarpa HOM05D004297 ORTHO05D005213 1.7e-20 102.4 75 69.3
TWI59G0377 Tripterygium wilfordii HOM05D004297 ORTHO05D005213 3.8e-20 101.3 74 67.6
Gohir.A07G141200 Gossypium hirsutum HOM05D004297 ORTHO05D005213 4.9e-20 100.9 74 68.9
Sabra02G0129100 Salix brachista HOM05D004297 ORTHO05D005213 8.4e-20 100.1 75 70.7
GSVIVG01026995001 Vitis vinifera HOM05D004297 ORTHO05D005213 8.4e-20 100.1 72 66.7
Nitab4.5_0000583g0330 Nicotiana tabacum HOM05D004297 ORTHO05D005213 1.9e-19 99.0 75 69.3
Nitab4.5_0006942g0020 Nicotiana tabacum HOM05D004297 ORTHO05D005213 1.9e-19 99.0 75 69.3
Cc02_g38370 Coffea canephora HOM05D004297 ORTHO05D005213 2.5e-19 98.6 76 65.8
unitig_749.g14347 Utricularia gibba HOM05D004297 ORTHO05D005213 4.2e-19 97.8 74 64.9
SEGI_01640 Sequoiadendron giganteum HOM05D004297 ORTHO05D005213 1.2e-18 96.3 74 59.5
SHI13402 Sapria himalayana HOM05D004297 ORTHO05D005213 5.1e-17 90.9 72 59.7
HPP92_012694 Vanilla planifolia HOM05D004297 ORTHO05D005213 3.3e-16 88.2 78 56.4
CSS0021987 Camellia sinensis var. sinensis HOM05D004297 ORTHO05D005213 3.1e-14 81.6 81 53.1
Ah.05g180350 Amaranthus hybridus HOM05D004297 ORTHO05D005213 2.0e-13 79.0 87 48.3
AagrBONN_evm.TU.Sc2ySwM_344.3204 Anthoceros agrestis HOM05D004297 ORTHO05D005213 1.7e-12 75.9 74 47.3
Dinv32504 Davidia involucrata HOM05D004297 ORTHO05D005213 2.1e-10 68.9 74 50.0
Mapoly0027s0035 Marchantia polymorpha HOM05D004297 ORTHO05D005213 4.6e-10 67.8 73 43.8
SMO367G0176 Selaginella moellendorffii HOM05D004297 ORTHO05D005213 1.4e-09 66.2 74 48.6
Zm00001eb257250 Zea mays HOM05D004297 ORTHO05D005213 1.4e-09 66.2 74 50.0
Os02g0786000 Oryza sativa ssp. japonica HOM05D004297 ORTHO05D005213 1.8e-09 65.9 74 47.3
Zm00001eb192800 Zea mays HOM05D004297 ORTHO05D005213 3.0e-09 65.1 73 49.3
CSS0028965 Camellia sinensis var. sinensis HOM05D004297 ORTHO05D005213 1.9e-08 62.4 43 62.8
Sed0025112 Sechium edule HOM05D004297 ORTHO05D005213 1.9e-08 62.4 74 48.6
Ah.05g180910 Amaranthus hybridus HOM05D000862 ORTHO05D000943 4.3e-08 61.2 49 59.2
Hma1.2p1_0733F.1_g210090 Hydrangea macrophylla HOM05D004297 ORTHO05D005213 7.4e-08 60.5 54 61.1
CBR_g36279 Chara braunii HOM05D004297 ORTHO05D005213 4.1e-06 54.7 75 38.7


User provided reference genes

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