Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT5G27395 Arabidopsis thaliana HOM05D004613 ORTHO05D006095 2.3e-179 632.1 314 100.0
AL6G39630 Arabidopsis lyrata HOM05D004613 ORTHO05D006095 1.3e-169 599.7 315 94.9
CARHR185980 Cardamine hirsuta HOM05D004613 ORTHO05D006095 1.8e-163 579.3 314 91.4
Carub.0006s2516 Capsella rubella HOM05D004613 ORTHO05D006095 1.5e-162 576.2 314 91.1
Sp2g20610 Schrenkiella parvula HOM05D004613 ORTHO05D006095 7.1e-157 557.4 312 86.9
Thhalv10004565m.g Eutrema salsugineum HOM05D004613 ORTHO05D006095 8.7e-155 550.4 313 86.6
BcaNung02466 Brassica carinata HOM05D004613 ORTHO05D006095 9.0e-152 540.4 313 85.6
BraA06t26679Z Brassica rapa HOM05D004613 ORTHO05D006095 1.2e-151 540.0 315 84.8
BcaNung04365 Brassica carinata HOM05D004613 ORTHO05D006095 2.2e-150 535.8 313 83.4
A06p37600 Brassica napus HOM05D004613 ORTHO05D006095 2.9e-150 535.4 313 85.0
BolC7t44599H Brassica oleracea HOM05D004613 ORTHO05D006095 3.2e-149 531.9 328 81.4
C07p40710 Brassica napus HOM05D004613 ORTHO05D006095 9.3e-149 530.4 328 81.7
Aa31LG11G9160 Aethionema arabicum HOM05D004613 ORTHO05D006095 6.1e-140 501.1 322 80.4
THA.LOC104818675 Tarenaya hassleriana HOM05D004613 ORTHO05D006095 4.1e-112 408.7 320 66.6
Cfa006537 Carpinus fangiana HOM05D004613 ORTHO05D006095 7.0e-104 381.3 314 63.7
Thecc.05G300000 Theobroma cacao HOM05D004613 ORTHO05D006095 4.5e-103 378.6 321 61.4
CiPaw.08G167100 Carya illinoinensis HOM05D004613 ORTHO05D006095 1.9e-101 373.2 314 60.8
QL03p004304 Quercus lobata HOM05D004613 ORTHO05D006095 7.2e-101 371.3 347 57.3
TWI56G1338 Tripterygium wilfordii HOM05D004613 ORTHO05D006095 1.2e-100 370.5 317 62.5
RcHm_v2.0_Chr3g0454031 Rosa chinensis HOM05D004613 ORTHO05D006095 3.0e-99 365.9 320 59.1
Gohir.A08G212400 Gossypium hirsutum HOM05D004613 ORTHO05D006095 5.2e-99 365.2 321 60.1
Gohir.D08G229400 Gossypium hirsutum HOM05D004613 ORTHO05D006095 3.4e-98 362.5 321 60.4
Gorai.004G243600 Gossypium raimondii HOM05D004613 ORTHO05D006095 3.4e-98 362.5 321 60.7
Ciclev10001987m.g Citrus clementina HOM05D004613 ORTHO05D006095 4.4e-98 362.1 320 58.4
Potri.013G026700 Populus trichocarpa HOM05D004613 ORTHO05D006095 1.8e-96 356.7 323 57.9
Haze_04249 Corylus avellana HOM05D004613 ORTHO05D006095 3.2e-96 355.9 311 61.7
ECA232G1001 Erigeron canadensis HOM05D004613 ORTHO05D006095 9.2e-96 354.4 289 61.9
MD12G1224400 Malus domestica HOM05D004613 ORTHO05D006095 1.2e-95 354.0 317 59.0
FvH4_6g05290 Fragaria vesca HOM05D004613 ORTHO05D006095 6.6e-94 348.2 277 62.5
arahy.Tifrunner.gnm1.ann1.R33V11 Arachis hypogaea HOM05D004613 ORTHO05D006095 3.3e-93 345.9 317 57.4
Eucgr.B02002 Eucalyptus grandis HOM05D004613 ORTHO05D006095 3.3e-93 345.9 276 63.8
FAN02G3501 Fragaria x ananassa HOM05D004613 ORTHO05D006095 4.3e-93 345.5 332 54.8
Solyc01g098630.3 Solanum lycopersicum HOM05D004613 ORTHO05D006095 4.3e-93 345.5 315 57.5
CSS0015750 Camellia sinensis var. sinensis HOM05D004613 ORTHO05D006095 5.6e-93 345.1 231 72.3
Lj5g0014952 Lotus japonicus HOM05D004613 ORTHO05D006095 5.6e-93 345.1 317 55.8
Sopen01g042180 Solanum pennellii HOM05D004613 ORTHO05D006095 5.6e-93 345.1 315 57.5
Rhsim07G0179300 Rhododendron simsii HOM05D004613 ORTHO05D006095 6.2e-92 341.7 380 50.5
FAN05G3359 Fragaria x ananassa HOM05D004613 ORTHO05D006095 8.0e-92 341.3 277 62.1
Phvul.007G182600 Phaseolus vulgaris HOM05D004613 ORTHO05D006095 8.0e-92 341.3 317 56.8
CANSAT54G0471 Cannabis sativa HOM05D004613 ORTHO05D006095 1.4e-91 340.5 318 56.3
FAN09G4458 Fragaria x ananassa HOM05D004613 ORTHO05D006095 1.8e-91 340.1 318 55.3
Sc09g0003370 Simmondsia chinensis HOM05D004613 ORTHO05D006095 2.3e-91 339.7 315 56.2
FAN05G4103 Fragaria x ananassa HOM05D004613 ORTHO05D006095 6.8e-91 338.2 291 59.5
PSO170G6761 Papaver somniferum HOM05D004613 ORTHO05D006095 8.9e-91 337.8 234 70.9
PSO407G0072 Papaver somniferum HOM05D004613 ORTHO05D006095 8.9e-91 337.8 234 70.9
FAN14G3061 Fragaria x ananassa HOM05D004613 ORTHO05D006095 1.2e-90 337.4 277 62.1
HanXRQChr09g0258721 Helianthus annuus HOM05D004613 ORTHO05D006095 2.0e-90 336.7 314 56.7
EL10Ac4g09300 Beta vulgaris HOM05D004613 ORTHO05D006095 5.8e-90 335.1 275 61.5
TPR.G2750 Trifolium pratense HOM05D004613 ORTHO05D006095 5.8e-90 335.1 274 60.6
Aqoxy2G03209 Aquilegia oxysepala HOM05D004613 ORTHO05D006095 2.9e-89 332.8 233 68.2
Atru.chr2.494 Acer truncatum HOM05D004613 ORTHO05D006095 3.7e-89 332.4 248 65.7
FAN14G4578 Fragaria x ananassa HOM05D004613 ORTHO05D006095 3.7e-89 332.4 296 58.1
ATR0626G318 Amborella trichopoda HOM05D004613 ORTHO05D006095 4.9e-89 332.0 240 66.2
Migut.B01124 Erythranthe guttata HOM05D004613 ORTHO05D006095 2.4e-88 329.7 225 69.3
Lalb_Chr02g0148411 Lupinus albus HOM05D004613 ORTHO05D006095 4.1e-88 328.9 272 61.0
vmacro05035 Vaccinium macrocarpon HOM05D004613 ORTHO05D006095 5.4e-88 328.6 229 70.3
MSTRG.20469 Avicennia marina HOM05D004613 ORTHO05D006095 1.2e-87 327.4 219 72.1
Sed0016876 Sechium edule HOM05D004613 ORTHO05D006095 2.0e-87 326.6 311 54.3
PGR083G0604 Punica granatum HOM05D004613 ORTHO05D006095 2.7e-87 326.2 285 58.9
arahy.Tifrunner.gnm1.ann1.LT91QM Arachis hypogaea HOM05D004613 ORTHO05D006095 7.8e-87 324.7 341 52.5
MELO3C015343.2 Cucumis melo HOM05D004613 ORTHO05D006095 6.6e-86 321.6 254 64.2
VMungo0720G0951 Vigna mungo HOM05D004613 ORTHO05D006095 1.1e-85 320.9 305 56.1
Nitab4.5_0015025g0020 Nicotiana tabacum HOM05D004613 ORTHO05D006095 1.9e-85 320.1 236 67.4
CsaV3_1G039190 Cucumis sativus L. HOM05D004613 ORTHO05D006095 2.5e-85 319.7 255 62.7
DCAR_015964 Daucus carota HOM05D004613 ORTHO05D006095 1.6e-84 317.0 239 64.4
Duzib128G1218 Durio zibethinus HOM05D004613 ORTHO05D006095 2.1e-84 316.6 323 53.9
Lsat_1_v5_gn_8_116060 Lactuca sativa HOM05D004613 ORTHO05D006095 2.1e-84 316.6 274 60.2
Nitab4.5_0004940g0150 Nicotiana tabacum HOM05D004613 ORTHO05D006095 3.1e-83 312.8 278 59.0
GSVIVG01022058001 Vitis vinifera HOM05D004613 ORTHO05D006095 5.2e-83 312.0 197 75.1
Prupe.6G330700 Prunus persica HOM05D004613 ORTHO05D006095 2.0e-82 310.1 314 54.1
Peaxi162Scf00434g00335 Petunia axillaris HOM05D004613 ORTHO05D006095 5.8e-82 308.5 219 69.9
Medtr1g082380 Medicago truncatula HOM05D004613 ORTHO05D006095 2.2e-81 306.6 282 53.9
TAR365G0571 Trochodendron aralioides HOM05D004613 ORTHO05D006095 2.4e-80 303.1 311 53.1
CDE12G0359 Ceratophyllum demersum HOM05D004613 ORTHO05D006095 3.2e-80 302.8 204 69.6
Zm00001eb329390 Zea mays HOM05D004613 ORTHO05D006095 2.3e-78 296.6 247 57.9
MBI17_g29025_MAGBIO Magnolia biondii HOM05D004613 ORTHO05D006095 8.6e-78 294.7 306 55.6
Manes.09G163100 Manihot esculenta HOM05D004613 ORTHO05D006095 8.6e-78 294.7 287 54.7
Lj9A681T39 Lonicera japonica HOM05D004613 ORTHO05D006095 1.5e-77 293.9 175 80.0
Glyma.20G231400 Glycine max HOM05D004613 ORTHO05D006095 2.1e-76 290.0 291 55.3
COL.COLO4_13522 Corchorus olitorius HOM05D004613 ORTHO05D006095 1.1e-75 287.7 294 54.8
Hund07039 Selenicereus undatus HOM05D004613 ORTHO05D006095 3.1e-75 286.2 272 56.2
HPP92_006941 Vanilla planifolia HOM05D004613 ORTHO05D006095 5.2e-75 285.4 202 66.8
Nn1g02102 Nelumbo nucifera HOM05D004613 ORTHO05D006095 3.2e-72 276.2 270 55.6
PGR083G1611 Punica granatum HOM05D004613 ORTHO05D006095 1.6e-71 273.9 290 52.8
Dinv40253 Davidia involucrata HOM05D004613 ORTHO05D006095 3.9e-70 269.2 196 67.9
Glyma.10G157300 Glycine max HOM05D004613 ORTHO05D006095 5.2e-67 258.8 317 47.9
BcaB04g19666 Brassica carinata HOM05D004613 ORTHO05D006095 3.0e-62 243.0 258 55.4
SHI18214 Sapria himalayana HOM05D004613 ORTHO05D006095 1.9e-61 240.4 173 69.4
Cpa.g.sc48.6 Carica papaya HOM05D004613 ORTHO05D006095 1.4e-56 224.2 299 45.2
CAN.G1134.17 Capsicum annuum HOM05D004613 ORTHO05D006095 4.6e-55 219.2 165 64.8
PGSC0003DMG400028600 Solanum tuberosum HOM05D004613 ORTHO05D006095 4.6e-55 219.2 244 50.0
Cc02_g32610 Coffea canephora HOM05D004613 ORTHO05D006095 1.3e-52 211.1 168 63.1
ClCG03G016790 Citrullus lanatus HOM05D000665 ORTHO05D006095 2.1e-52 210.3 421 34.9
SalBow8G2842 Salvia bowleyana HOM05D004613 ORTHO05D006095 4.0e-51 206.1 248 45.2
Mapoly0007s0105 Marchantia polymorpha HOM05D004613 ORTHO05D006095 1.5e-50 204.1 223 47.1
Pp3c24_5170 Physcomitrium patens HOM05D004613 ORTHO05D006095 3.0e-46 189.9 273 37.0
SEGI_25140 Sequoiadendron giganteum HOM05D004613 ORTHO05D006095 1.9e-45 187.2 174 55.7
Actinidia05726 Actinidia chinensis HOM05D004613 ORTHO05D006095 3.3e-45 186.4 269 43.9
SMO115G0217 Selaginella moellendorffii HOM05D004613 ORTHO05D006095 8.1e-44 181.8 200 47.0
AUR62000861 Chenopodium quinoa HOM05D004613 ORTHO05D006095 2.9e-41 173.3 155 58.1
CBR_g37761 Chara braunii HOM05D004613 ORTHO05D006095 8.4e-41 171.8 224 42.9
Sabra13G0027500 Salix brachista HOM05D004613 ORTHO05D006095 1.1e-40 171.4 363 34.7
SGA_v2.0_scaffold199G41179 Striga asiatica HOM05D004613 ORTHO05D006095 2.7e-39 166.8 264 40.5
Oeu012099.1 Olea europaea HOM05D004613 ORTHO05D006095 1.3e-38 164.5 129 64.3
MD04G1209800 Malus domestica HOM05D004613 ORTHO05D006095 5.7e-37 159.1 251 40.6
unitig_747.g21346 Utricularia gibba HOM05D004613 ORTHO05D006095 2.4e-35 153.7 150 52.0
AUR62005113 Chenopodium quinoa HOM05D004613 ORTHO05D006095 6.1e-31 139.0 253 38.3
unitig_747.g21345 Utricularia gibba HOM05D004613 ORTHO05D006095 3.1e-27 126.7 71 77.5
Cc02_g32600 Coffea canephora HOM05D004613 ORTHO05D006095 2.9e-25 120.2 69 79.7
BolC1t02515H Brassica oleracea HOM05D004613 ORTHO05D006095 3.2e-24 116.7 111 59.5
C05p42320 Brassica napus HOM05D004613 ORTHO05D006095 1.8e-22 110.9 111 56.8
C04p20640 Brassica napus HOM05D004613 ORTHO05D006095 2.3e-22 110.5 82 70.7
BolC4t23591H Brassica oleracea HOM05D004613 ORTHO05D006095 2.3e-22 110.5 82 70.7
MCO14G439 Micromonas commoda HOM05D004613 ORTHO05D006095 3.9e-22 109.8 204 31.9
C09p29080 Brassica napus HOM05D004613 ORTHO05D006095 8.8e-22 108.6 111 56.8
C03p78440 Brassica napus HOM05D012085 ORTHO05D006095 2.6e-21 107.1 82 67.1
BolC5t32960H Brassica oleracea HOM05D004613 ORTHO05D006095 7.4e-21 105.5 83 67.5
MD04G1209900 Malus domestica HOM05D004613 ORTHO05D006095 1.8e-19 100.9 57 84.2
BcaC04g22128 Brassica carinata HOM05D004613 ORTHO05D006095 4.5e-18 96.3 95 55.8
C01p25640 Brassica napus HOM05D004613 ORTHO05D006095 4.5e-18 96.3 86 61.6
C09p23030 Brassica napus HOM05D004613 ORTHO05D006095 5.9e-18 95.9 97 54.6
BcaC07g37284 Brassica carinata HOM05D004613 ORTHO05D006095 2.9e-17 93.6 86 60.5
BolC8t47558H Brassica oleracea HOM05D004613 ORTHO05D006095 2.9e-17 93.6 86 60.5
HanXRQChr13g0397031 Helianthus annuus HOM05D004613 ORTHO05D006095 2.9e-17 93.6 111 48.6
BcaC09g50421 Brassica carinata HOM05D004613 ORTHO05D006095 1.4e-16 91.3 84 59.5
C07p27290 Brassica napus HOM05D004613 ORTHO05D040533 1.6e-15 87.8 59 72.9
BolC7t43257H Brassica oleracea HOM05D004613 ORTHO05D040533 1.6e-15 87.8 59 72.9
BolC4t23587H Brassica oleracea HOM05D004613 ORTHO05D006095 2.1e-15 87.4 58 75.9
A09p05250 Brassica napus HOM05D004613 ORTHO05D006095 3.6e-15 86.7 49 83.7
BcaC02g11087 Brassica carinata HOM05D004010 ORTHO05D006095 4.7e-15 86.3 55 78.2
C09p20670 Brassica napus HOM05D004613 ORTHO05D006095 3.9e-14 83.2 56 73.2
C09p05710 Brassica napus HOM05D004613 ORTHO05D006095 2.6e-13 80.5 50 80.0
C04p31600 Brassica napus HOM05D004613 ORTHO05D006095 5.7e-13 79.3 59 67.8
C02p33910 Brassica napus HOM05D004613 ORTHO05D006095 2.8e-12 77.0 51 76.5
C03p71850 Brassica napus HOM05D004613 ORTHO05D006095 1.4e-11 74.7 56 66.1
SEGI_04064 Sequoiadendron giganteum HOM05D004613 ORTHO05D006095 3.1e-11 73.6 52 63.5
Cre02.g117300 Chlamydomonas reinhardtii HOM05D004613 ORTHO05D006095 2.2e-09 67.4 168 30.4
AagrBONN_evm.TU.Sc2ySwM_117.373 Anthoceros agrestis HOM05D004613 ORTHO05D006095 1.9e-08 64.3 95 37.9
CSS0002320 Camellia sinensis var. sinensis HOM05D004613 ORTHO05D006095 1.9e-08 64.3 52 63.5
CSS0009134 Camellia sinensis var. sinensis HOM05D004613 ORTHO05D006095 1.9e-08 64.3 52 63.5
CSS0011661 Camellia sinensis var. sinensis HOM05D004613 ORTHO05D006095 1.9e-08 64.3 52 63.5
CSS0019992 Camellia sinensis var. sinensis HOM05D004613 ORTHO05D006095 1.9e-08 64.3 52 63.5
CSS0023662 Camellia sinensis var. sinensis HOM05D004613 ORTHO05D006095 1.9e-08 64.3 52 63.5
CSS0033019 Camellia sinensis var. sinensis HOM05D004613 ORTHO05D006095 1.9e-08 64.3 52 63.5
CSS0041443 Camellia sinensis var. sinensis HOM05D004613 ORTHO05D006095 1.9e-08 64.3 52 63.5
C04p20620 Brassica napus HOM05D000249 ORTHO05D032228 1.6e-07 61.2 29 86.2
BolC2t08054H Brassica oleracea HOM05D004613 ORTHO05D014940 6.1e-07 59.3 30 80.0
C07p10570 Brassica napus HOM05D004613 ORTHO05D014940 1.0e-06 58.5 69 44.9
BcaB01g02574 Brassica carinata HOM05D001081 ORTHO05D004708 1.8e-06 57.8 49 63.3
BraA06t25731Z Brassica rapa HOM05D030286 ORTHO05D014940 3.0e-06 57.0 27 92.6
BcaC02g11915 Brassica carinata HOM05D004613 ORTHO05D014940 4.0e-06 56.6 28 82.1
C08p07130 Brassica napus HOM05D004613 ORTHO05D014940 5.2e-06 56.2 55 50.9
BolC9t56574H Brassica oleracea HOM05D004613 ORTHO05D014940 6.7e-06 55.8 55 52.7
BcaB02g10346 Brassica carinata HOM05D004613 ORTHO05D014940 8.8e-06 55.5 29 79.3


User provided reference genes

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