Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT5G27390 Arabidopsis thaliana HOM05D006710 ORTHO05D008353 5.0e-134 481.1 242 100.0
AL6G39620 Arabidopsis lyrata HOM05D006710 ORTHO05D008353 1.2e-127 459.9 242 95.9
Carub.0006s2515 Capsella rubella HOM05D006710 ORTHO05D008353 3.3e-125 451.8 242 93.0
CARHR185990 Cardamine hirsuta HOM05D006710 ORTHO05D008353 2.4e-120 435.6 242 89.7
Sp2g20620 Schrenkiella parvula HOM05D006710 ORTHO05D008353 5.0e-110 401.4 250 81.2
Thhalv10004765m.g Eutrema salsugineum HOM05D006710 ORTHO05D008353 5.6e-109 397.9 248 81.5
BcaNung02465 Brassica carinata HOM05D006710 ORTHO05D008353 8.0e-108 394.0 249 81.1
BcaNung04366 Brassica carinata HOM05D006710 ORTHO05D008353 4.4e-106 388.3 251 79.3
A06p37590 Brassica napus HOM05D006710 ORTHO05D008353 2.1e-103 379.4 259 77.6
C07p40720 Brassica napus HOM05D006710 ORTHO05D008353 2.7e-103 379.0 261 77.4
BolC7t44600H Brassica oleracea HOM05D006710 ORTHO05D008353 2.7e-103 379.0 261 77.4
THA.LOC104802809 Tarenaya hassleriana HOM05D006710 ORTHO05D008353 5.2e-99 364.8 251 73.7
Aa31LG11G9170 Aethionema arabicum HOM05D006710 ORTHO05D008353 5.2e-91 338.2 275 66.9
BraA06t26678Z Brassica rapa HOM05D006710 ORTHO05D008353 1.1e-88 330.5 238 74.8
QL03p004347 Quercus lobata HOM05D006710 ORTHO05D008353 5.4e-88 328.2 246 67.5
Thecc.05G308800 Theobroma cacao HOM05D006710 ORTHO05D008353 1.1e-85 320.5 249 64.7
Actinidia23607 Actinidia chinensis HOM05D006710 ORTHO05D008353 2.5e-85 319.3 250 65.2
Dinv40255 Davidia involucrata HOM05D006710 ORTHO05D008353 2.5e-85 319.3 252 67.1
TWI56G0551 Tripterygium wilfordii HOM05D006710 ORTHO05D008353 4.3e-85 318.5 249 65.5
Haze_04239 Corylus avellana HOM05D006710 ORTHO05D008353 7.3e-85 317.8 245 65.7
Sabra13G0027300 Salix brachista HOM05D006710 ORTHO05D008353 7.3e-85 317.8 241 66.0
Ciclev10002268m.g Citrus clementina HOM05D006710 ORTHO05D008353 9.6e-85 317.4 240 66.2
TWI12G0766 Tripterygium wilfordii HOM05D006710 ORTHO05D008353 2.1e-84 316.2 242 64.9
CSS0006596 Camellia sinensis var. sinensis HOM05D006710 ORTHO05D008353 8.1e-84 314.3 250 65.6
Cfa006542 Carpinus fangiana HOM05D006710 ORTHO05D008353 8.1e-84 314.3 251 64.9
Actinidia05724 Actinidia chinensis HOM05D006710 ORTHO05D008353 2.4e-83 312.8 251 64.9
CiPaw.08G166900 Carya illinoinensis HOM05D006710 ORTHO05D008353 6.9e-83 311.2 251 64.1
Duzib177G0772 Durio zibethinus HOM05D006710 ORTHO05D008353 9.0e-83 310.8 249 63.1
Cpa.g.sc48.8 Carica papaya HOM05D006710 ORTHO05D008353 1.5e-82 310.1 216 69.9
CSS0018519 Camellia sinensis var. sinensis HOM05D006710 ORTHO05D008353 4.4e-82 308.5 217 70.0
Atru.chr2.492 Acer truncatum HOM05D006710 ORTHO05D008353 9.9e-82 307.4 245 64.5
Potri.013G026500 Populus trichocarpa HOM05D006710 ORTHO05D008353 9.9e-82 307.4 252 62.7
Gohir.D13G178900 Gossypium hirsutum HOM05D006710 ORTHO05D008353 8.4e-81 304.3 249 61.4
Gorai.013G204100 Gossypium raimondii HOM05D006710 ORTHO05D008353 1.1e-80 303.9 249 61.4
Nn4g26145 Nelumbo nucifera HOM05D006710 ORTHO05D008353 1.9e-80 303.1 258 63.6
Prupe.6G330500 Prunus persica HOM05D006710 ORTHO05D008353 1.9e-80 303.1 253 64.0
Rhsim07G0179500 Rhododendron simsii HOM05D006710 ORTHO05D008353 1.9e-80 303.1 256 62.9
Lj9A681T40 Lonicera japonica HOM05D006710 ORTHO05D008353 4.2e-80 302.0 271 60.1
MD04G1209500 Malus domestica HOM05D006710 ORTHO05D008353 4.2e-80 302.0 252 63.5
Gohir.A13G173100 Gossypium hirsutum HOM05D006710 ORTHO05D008353 5.4e-80 301.6 247 61.5
Manes.09G163400 Manihot esculenta HOM05D006710 ORTHO05D008353 1.2e-79 300.4 252 63.1
CsaV3_2G004900 Cucumis sativus L. HOM05D006710 ORTHO05D008353 2.7e-79 299.3 251 60.2
COL.COLO4_13519 Corchorus olitorius HOM05D000735 ORTHO05D000838 7.9e-79 297.7 231 63.2
FAN05G4089 Fragaria x ananassa HOM05D006710 ORTHO05D008353 2.3e-78 296.2 252 60.7
vmacro05032 Vaccinium macrocarpon HOM05D006710 ORTHO05D008353 2.3e-78 296.2 231 63.6
Gohir.D11G272800 Gossypium hirsutum HOM05D006710 ORTHO05D008353 3.9e-78 295.4 243 62.1
Gorai.007G294100 Gossypium raimondii HOM05D006710 ORTHO05D008353 3.9e-78 295.4 243 62.1
Eucgr.H04455 Eucalyptus grandis HOM05D006710 ORTHO05D008353 5.1e-78 295.0 246 60.6
RcHm_v2.0_Chr3g0454051 Rosa chinensis HOM05D006710 ORTHO05D008353 6.6e-78 294.7 253 59.7
AUR62005111 Chenopodium quinoa HOM05D006710 ORTHO05D008353 1.5e-77 293.5 249 58.2
MD12G1224100 Malus domestica HOM05D006710 ORTHO05D008353 1.9e-77 293.1 253 61.7
CAN.G809.16 Capsicum annuum HOM05D006710 ORTHO05D008353 5.6e-77 291.6 240 61.2
PGR031G3544 Punica granatum HOM05D006710 ORTHO05D008353 1.6e-76 290.0 223 65.9
FAN14G5365 Fragaria x ananassa HOM05D006710 ORTHO05D008353 2.1e-76 289.7 267 58.1
CANSAT54G0344 Cannabis sativa HOM05D006710 ORTHO05D008353 2.8e-76 289.3 253 62.5
EL10Ac4g09302 Beta vulgaris HOM05D006710 ORTHO05D008353 3.6e-76 288.9 252 58.7
Peaxi162Scf00071g00728 Petunia axillaris HOM05D006710 ORTHO05D008353 6.2e-76 288.1 237 62.9
HanXRQChr09g0258761 Helianthus annuus HOM05D006710 ORTHO05D008353 8.1e-76 287.7 232 63.4
AUR62000864 Chenopodium quinoa HOM05D006710 ORTHO05D008353 3.1e-75 285.8 255 56.5
MSTRG.20477 Avicennia marina HOM05D006710 ORTHO05D008353 4.0e-75 285.4 252 57.5
CDE08G1170 Ceratophyllum demersum HOM05D006710 ORTHO05D008353 4.0e-75 285.4 248 61.3
Sed0009429 Sechium edule HOM05D006710 ORTHO05D008353 4.0e-75 285.4 262 57.6
PGSC0003DMG400026653 Solanum tuberosum HOM05D006710 ORTHO05D008353 4.0e-75 285.4 240 62.1
Sopen08g012960 Solanum pennellii HOM05D006710 ORTHO05D008353 6.9e-75 284.6 240 60.8
Nitab4.5_0010747g0020 Nicotiana tabacum HOM05D006710 ORTHO05D008353 4.5e-74 282.0 233 62.7
Nitab4.5_0000424g0030 Nicotiana tabacum HOM05D006710 ORTHO05D008353 5.8e-74 281.6 233 63.9
FAN09G4503 Fragaria x ananassa HOM05D006710 ORTHO05D008353 7.6e-74 281.2 293 53.6
SalBow8G3090 Salvia bowleyana HOM05D006710 ORTHO05D008353 2.2e-73 279.6 234 60.7
arahy.Tifrunner.gnm1.ann1.KZLY5F Arachis hypogaea HOM05D006710 ORTHO05D008353 4.9e-73 278.5 236 61.9
Aqoxy2G03215 Aquilegia oxysepala HOM05D006710 ORTHO05D008353 6.4e-73 278.1 250 59.2
arahy.Tifrunner.gnm1.ann1.ACRB0G Arachis hypogaea HOM05D006710 ORTHO05D008353 1.1e-72 277.3 236 61.4
Migut.B01148 Erythranthe guttata HOM05D006710 ORTHO05D008353 2.4e-72 276.2 172 75.0
Solyc08g043180.3 Solanum lycopersicum HOM05D006710 ORTHO05D008353 3.2e-72 275.8 196 67.9
ClCG02G016080 Citrullus lanatus HOM05D006710 ORTHO05D008353 4.2e-72 275.4 252 57.9
MBI19_g27535_MAGBIO Magnolia biondii HOM05D006710 ORTHO05D008353 4.2e-72 275.4 255 57.3
unitig_0.g2209 Utricularia gibba HOM05D006710 ORTHO05D008353 7.1e-72 274.6 241 58.9
ECA232G0378 Erigeron canadensis HOM05D006710 ORTHO05D008353 1.6e-71 273.5 248 56.0
Lalb_Chr15g0077091 Lupinus albus HOM05D006710 ORTHO05D008353 6.0e-71 271.6 250 58.4
Os05g0401300 Oryza sativa ssp. japonica HOM05D006710 ORTHO05D008353 1.3e-70 270.4 248 56.0
PSO407G0185 Papaver somniferum HOM05D006710 ORTHO05D008353 1.3e-70 270.4 250 56.0
FAN14G4294 Fragaria x ananassa HOM05D006710 ORTHO05D008353 2.3e-70 269.6 254 57.1
PSO170G1405 Papaver somniferum HOM05D006710 ORTHO05D008353 2.3e-70 269.6 250 56.0
Lalb_Chr02g0148381 Lupinus albus HOM05D006710 ORTHO05D008353 1.9e-69 266.5 244 57.8
Lj5g0024082 Lotus japonicus HOM05D006710 ORTHO05D008353 5.6e-69 265.0 243 56.4
Sc09g0003360 Simmondsia chinensis HOM05D006710 ORTHO05D006029 1.6e-68 263.5 195 64.1
Hund07043 Selenicereus undatus HOM05D006710 ORTHO05D008353 6.2e-68 261.5 253 54.5
Ah.06g190140 Amaranthus hybridus HOM05D006710 ORTHO05D008353 4.0e-67 258.8 253 53.8
Glyma.10G157000 Glycine max HOM05D006710 ORTHO05D008353 5.3e-67 258.5 245 54.3
Gohir.A11G262800 Gossypium hirsutum HOM05D006710 ORTHO05D008353 2.0e-66 256.5 213 60.6
VMungo0720G2835 Vigna mungo HOM05D006710 ORTHO05D008353 5.8e-66 255.0 246 52.8
Zm00001eb346790 Zea mays HOM05D006710 ORTHO05D008353 5.8e-66 255.0 188 63.8
ATR0626G338 Amborella trichopoda HOM05D006710 ORTHO05D008353 2.2e-65 253.1 230 55.7
Ca_10089_v3 Cicer arietinum L. HOM05D006710 ORTHO05D008353 8.4e-65 251.1 244 55.3
Lsat_1_v5_gn_8_116001 Lactuca sativa HOM05D006710 ORTHO05D008353 8.4e-65 251.1 207 61.4
Phvul.007G182300 Phaseolus vulgaris HOM05D006710 ORTHO05D008353 1.9e-64 250.0 246 52.0
HPP92_013667 Vanilla planifolia HOM05D006710 ORTHO05D008353 6.0e-63 245.0 215 57.2
SEGI_09082 Sequoiadendron giganteum HOM05D006710 ORTHO05D008353 1.9e-61 240.0 189 59.3
Psat6g148920 Pisum sativum HOM05D006710 ORTHO05D008353 4.3e-61 238.8 249 51.4
SGA_v2.0_scaffold244G44356 Striga asiatica HOM05D006710 ORTHO05D008353 1.6e-60 236.9 235 51.9
Medtr1g082430 Medicago truncatula HOM05D006710 ORTHO05D008353 4.1e-59 232.3 218 54.1
TAR362G0522 Trochodendron aralioides HOM05D006710 ORTHO05D008353 1.2e-58 230.7 144 80.6
GSVIVG01000003001 Vitis vinifera HOM05D006710 ORTHO05D008353 1.5e-58 230.3 144 77.1
CDE02G4396 Ceratophyllum demersum HOM05D000137 ORTHO05D000503 8.4e-57 224.6 207 58.5
AagrBONN_evm.TU.Sc2ySwM_368.548 Anthoceros agrestis HOM05D006710 ORTHO05D008353 3.6e-47 192.6 220 45.9
MELO3C004308.2 Cucumis melo HOM05D006710 ORTHO05D008353 3.6e-47 192.6 182 56.6
FAN05G4701 Fragaria x ananassa HOM05D006710 ORTHO05D008353 9.7e-45 184.5 241 47.3
TPR.G327 Trifolium pratense HOM05D006710 ORTHO05D008353 4.1e-43 179.1 165 53.9
Glyma.20G231700 Glycine max HOM05D006710 ORTHO05D008353 2.6e-42 176.4 134 61.9
FvH4_6g05310 Fragaria vesca HOM05D006710 ORTHO05D008353 5.9e-42 175.3 164 56.7
Mapoly0057s0090 Marchantia polymorpha HOM05D006710 ORTHO05D008353 2.5e-40 169.9 177 45.2
Cc02_g32660 Coffea canephora HOM05D006710 ORTHO05D008353 6.7e-38 161.8 155 63.2
Pp3c11_21800 Physcomitrium patens HOM05D006710 ORTHO05D008353 6.7e-38 161.8 178 42.1
SMO356G0400 Selaginella moellendorffii HOM05D006710 ORTHO05D008353 7.0e-35 151.8 167 44.9
FAN02G1407 Fragaria x ananassa HOM05D006710 ORTHO05D008353 5.9e-34 148.7 138 58.0
DCAR_022246 Daucus carota HOM05D006710 ORTHO05D008353 2.9e-33 146.4 145 54.5
Cc02_g32640 Coffea canephora HOM05D006710 ORTHO05D008353 1.1e-32 144.4 95 69.5
EL10Ac7g17500 Beta vulgaris HOM05D006710 ORTHO05D008353 8.0e-23 111.7 96 56.2
Thecc.05G311300 Theobroma cacao HOM05D000126 ORTHO05D008353 1.5e-21 107.5 68 72.1
CBR_g32459 Chara braunii HOM05D000019 ORTHO05D000353 1.8e-14 84.0 183 28.4
MCO13G061 Micromonas commoda HOM05D006710 ORTHO05D008353 3.0e-14 83.2 132 33.3
Cre13.g564050 Chlamydomonas reinhardtii HOM05D006710 ORTHO05D008353 2.8e-12 76.6 200 26.5
PRCOL_00002748 Prasinoderma coloniale HOM05D006710 ORTHO05D008353 1.0e-09 68.2 158 31.6
Dinv22904 Davidia involucrata HOM05D006710 ORTHO05D008353 8.0e-07 58.5 62 48.4


User provided reference genes

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