Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT5G26610 Arabidopsis thaliana HOM05D005826 ORTHO05D004357 1.9e-138 496.1 302 100.0
Carub.0006s2438 Capsella rubella HOM05D005826 ORTHO05D004357 1.9e-130 469.5 302 95.4
AL6G38590 Arabidopsis lyrata HOM05D005826 ORTHO05D004357 7.4e-127 457.6 330 86.7
Thhalv10004695m.g Eutrema salsugineum HOM05D005826 ORTHO05D004357 2.9e-115 419.1 303 86.8
Sp2g21260 Schrenkiella parvula HOM05D005826 ORTHO05D004357 8.0e-105 384.4 302 83.1
A09p05710 Brassica napus HOM05D005826 ORTHO05D004357 1.8e-104 383.3 302 72.8
BraA09t36211Z Brassica rapa HOM05D005826 ORTHO05D004357 1.8e-104 383.3 302 72.8
BcaC04g23633 Brassica carinata HOM05D005826 ORTHO05D004357 2.5e-98 362.8 302 72.2
C09p06300 Brassica napus HOM05D005826 ORTHO05D004357 2.5e-98 362.8 302 72.2
BolC9t53550H Brassica oleracea HOM05D005826 ORTHO05D004357 2.5e-98 362.8 302 72.2
THA.LOC104821749 Tarenaya hassleriana HOM05D005826 ORTHO05D004357 2.5e-98 362.8 303 77.9
BcaB04g19716 Brassica carinata HOM05D005826 ORTHO05D004357 1.3e-94 350.5 302 73.8
Aa31LG11G9920 Aethionema arabicum HOM05D005826 ORTHO05D004357 7.7e-92 341.3 362 67.7
CARHR186850 Cardamine hirsuta HOM05D005826 ORTHO05D004357 6.5e-91 338.2 275 82.2
Atru.chr12.1539 Acer truncatum HOM05D005826 ORTHO05D004357 2.2e-86 323.2 303 69.6
Cfa006771 Carpinus fangiana HOM05D005826 ORTHO05D004357 8.3e-86 321.2 304 68.1
CiPaw.07G036400 Carya illinoinensis HOM05D005826 ORTHO05D004357 8.3e-86 321.2 302 69.2
MD12G1199800 Malus domestica HOM05D005826 ORTHO05D004357 3.1e-85 319.3 303 68.3
Ciclev10012662m.g Citrus clementina HOM05D005826 ORTHO05D004357 2.7e-84 316.2 310 68.1
Sopen01g044700 Solanum pennellii HOM05D005826 ORTHO05D004357 3.5e-84 315.8 303 64.4
SGA_v2.0_scaffold22G09707 Striga asiatica HOM05D005826 ORTHO05D004357 3.5e-84 315.8 288 62.2
Migut.N00974 Erythranthe guttata HOM05D005826 ORTHO05D004357 4.5e-84 315.5 291 61.5
Lalb_Chr18g0046231 Lupinus albus HOM05D005826 ORTHO05D004357 4.5e-84 315.5 309 66.7
Solyc01g101250.3 Solanum lycopersicum HOM05D005826 ORTHO05D004357 7.7e-84 314.7 303 64.4
AUR62006820 Chenopodium quinoa HOM05D005826 ORTHO05D004357 1.7e-83 313.5 303 59.1
Cpa.g.sc48.51 Carica papaya HOM05D005826 ORTHO05D004357 2.3e-83 313.2 305 70.8
GSVIVG01031331001 Vitis vinifera HOM05D005826 ORTHO05D004357 2.9e-83 312.8 319 63.9
Eucgr.B01823 Eucalyptus grandis HOM05D005826 ORTHO05D004357 3.8e-83 312.4 280 66.8
CANSAT54G1651 Cannabis sativa HOM05D005826 ORTHO05D004357 1.9e-82 310.1 305 65.2
Lj5C318G10 Lonicera japonica HOM05D002908 ORTHO05D007390 5.6e-82 308.5 302 61.9
Glyma.03G228100 Glycine max HOM05D005826 ORTHO05D004357 1.2e-81 307.4 308 64.6
Hma1.2p1_0052F.1_g030400 Hydrangea macrophylla HOM05D005826 ORTHO05D004357 1.6e-81 307.0 275 68.7
Rhsim11G0105000 Rhododendron simsii HOM05D005826 ORTHO05D004357 1.6e-81 307.0 277 72.2
Ca_09273_v3 Cicer arietinum L. HOM05D005826 ORTHO05D004357 2.8e-81 306.2 297 65.0
VMungo1383G1915 Vigna mungo HOM05D005826 ORTHO05D004357 4.7e-81 305.4 308 59.7
Hund07271 Selenicereus undatus HOM05D005826 ORTHO05D004357 8.0e-81 304.7 303 63.0
TPR.G1630 Trifolium pratense HOM05D005826 ORTHO05D004357 1.0e-80 304.3 312 60.9
CAN.G1248.16 Capsicum annuum HOM05D005826 ORTHO05D004357 1.8e-80 303.5 318 64.2
Hund21832 Selenicereus undatus HOM05D005826 ORTHO05D004357 1.8e-80 303.5 318 57.5
Psat3g015120 Pisum sativum HOM05D005826 ORTHO05D004357 2.3e-80 303.1 309 63.1
TWI12G0016 Tripterygium wilfordii HOM05D005826 ORTHO05D004357 2.3e-80 303.1 281 66.2
Actinidia17738 Actinidia chinensis HOM05D005826 ORTHO05D004357 4.0e-80 302.4 308 66.9
Dinv30950 Davidia involucrata HOM05D005826 ORTHO05D004357 1.5e-79 300.4 302 63.6
Nn3g21953 Nelumbo nucifera HOM05D005826 ORTHO05D004357 2.0e-79 300.1 305 64.6
Phvul.001G222000 Phaseolus vulgaris HOM05D005826 ORTHO05D004357 2.0e-79 300.1 308 58.8
arahy.Tifrunner.gnm1.ann1.CWLZ7L Arachis hypogaea HOM05D005826 ORTHO05D004357 2.6e-79 299.7 299 61.5
arahy.Tifrunner.gnm1.ann1.TKMT5T Arachis hypogaea HOM05D005826 ORTHO05D004357 2.6e-79 299.7 299 62.5
Sc09g0002410 Simmondsia chinensis HOM05D005826 ORTHO05D004357 2.6e-79 299.7 286 64.7
EL10Ac4g09561 Beta vulgaris HOM05D005826 ORTHO05D004357 5.7e-79 298.5 301 59.5
AUR62000478 Chenopodium quinoa HOM05D005826 ORTHO05D004357 5.7e-79 298.5 266 60.9
Thecc.05G329600 Theobroma cacao HOM05D005826 ORTHO05D004357 5.7e-79 298.5 306 61.4
Manes.09G181300 Manihot esculenta HOM05D005826 ORTHO05D004357 7.5e-79 298.1 278 71.2
COL.COLO4_05485 Corchorus olitorius HOM05D005826 ORTHO05D004357 1.3e-78 297.4 302 55.3
Lj1g0011738 Lotus japonicus HOM05D005826 ORTHO05D004357 2.9e-78 296.2 307 61.9
Sed0027683 Sechium edule HOM05D005826 ORTHO05D004357 4.9e-78 295.4 280 68.2
PGR083G1613 Punica granatum HOM05D005826 ORTHO05D004357 1.8e-77 293.5 304 55.9
vmacro01667 Vaccinium macrocarpon HOM05D005826 ORTHO05D004357 4.1e-77 292.4 313 64.2
Glyma.19G225400 Glycine max HOM05D005826 ORTHO05D004357 1.2e-76 290.8 305 63.9
Nn4g25335 Nelumbo nucifera HOM05D005826 ORTHO05D004357 1.6e-76 290.4 296 66.2
CsaV3_1G038040 Cucumis sativus L. HOM05D005826 ORTHO05D004357 5.9e-76 288.5 306 65.0
Lsat_1_v5_gn_7_64900 Lactuca sativa HOM05D005826 ORTHO05D004357 1.3e-75 287.3 304 64.5
DCAR_006590 Daucus carota HOM05D005826 ORTHO05D004357 1.9e-74 283.5 192 75.0
FvH4_6g08510 Fragaria vesca HOM05D005826 ORTHO05D004357 4.3e-74 282.3 302 64.2
FAN14G1262 Fragaria x ananassa HOM05D005826 ORTHO05D004357 9.5e-74 281.2 310 63.2
Haze_03986 Corylus avellana HOM05D005826 ORTHO05D004357 1.2e-73 280.8 264 69.7
Aqoxy2G02470 Aquilegia oxysepala HOM05D005826 ORTHO05D004357 2.1e-73 280.0 299 63.9
FAN09G2233 Fragaria x ananassa HOM05D005826 ORTHO05D004357 2.1e-73 280.0 302 60.9
Mapoly0026s0010 Marchantia polymorpha HOM05D005826 ORTHO05D004357 1.8e-72 276.9 299 55.5
HPP92_006322 Vanilla planifolia HOM05D005826 ORTHO05D004357 2.3e-72 276.6 308 51.6
Medtr7g111520 Medicago truncatula HOM05D005826 ORTHO05D004357 3.1e-72 276.2 306 61.4
HPP92_027884 Vanilla planifolia HOM05D005826 ORTHO05D004357 1.5e-71 273.9 306 51.6
unitig_26.g9561 Utricularia gibba HOM05D005826 ORTHO05D005018 2.0e-71 273.5 306 56.5
Pp3c20_6860 Physcomitrium patens HOM05D005826 ORTHO05D004357 2.6e-71 273.1 304 57.9
Manes.08G107500 Manihot esculenta HOM05D005826 ORTHO05D004357 7.5e-71 271.6 304 58.6
TAR636G1621 Trochodendron aralioides HOM05D005826 ORTHO05D004357 3.7e-70 269.2 304 51.0
Hma1.2p1_0052F.1_g030390 Hydrangea macrophylla HOM05D005826 ORTHO05D004357 1.1e-69 267.7 168 79.2
SEGI_10560 Sequoiadendron giganteum HOM05D005826 ORTHO05D004357 5.0e-67 258.8 306 47.7
Ah.06g190730 Amaranthus hybridus HOM05D005826 ORTHO05D004357 4.7e-65 252.3 300 51.0
Sabra13G0001500 Salix brachista HOM05D005826 ORTHO05D004357 7.5e-63 245.0 297 56.9
Zm00001eb089260 Zea mays HOM05D005826 ORTHO05D004357 7.5e-63 245.0 269 64.3
ATR0796G273 Amborella trichopoda HOM05D005826 ORTHO05D004357 1.7e-62 243.8 289 55.0
ECA240G4745 Erigeron canadensis HOM05D005826 ORTHO05D004357 2.4e-61 240.0 303 60.4
CSS0045001 Camellia sinensis var. sinensis HOM05D005826 ORTHO05D004357 5.4e-61 238.8 302 59.9
RcHm_v2.0_Chr3g0458551 Rosa chinensis HOM05D005826 ORTHO05D004357 7.1e-61 238.4 303 58.7
CSS0017545 Camellia sinensis var. sinensis HOM05D005826 ORTHO05D004357 9.2e-61 238.0 298 60.1
ClCG03G017880 Citrullus lanatus HOM05D005826 ORTHO05D004357 3.5e-60 236.1 340 51.5
MSTRG.27910 Avicennia marina HOM05D005826 ORTHO05D004357 1.7e-59 233.8 289 52.2
HanXRQChr09g0247941 Helianthus annuus HOM05D005826 ORTHO05D004357 5.1e-59 232.3 292 61.3
Cc02_g35870 Coffea canephora HOM05D005826 ORTHO05D004357 8.6e-59 231.5 305 58.7
Peaxi162Scf00194g00018 Petunia axillaris HOM05D005826 ORTHO05D004357 1.1e-58 231.1 303 55.8
FAN02G3127 Fragaria x ananassa HOM05D005826 ORTHO05D004357 5.6e-58 228.8 298 55.7
Rhsim11G0104700 Rhododendron simsii HOM05D005826 ORTHO05D004357 5.6e-58 228.8 276 56.5
Gorai.013G210000 Gossypium raimondii HOM05D005826 ORTHO05D004357 1.2e-57 227.6 311 55.0
Gohir.D13G184300 Gossypium hirsutum HOM05D005826 ORTHO05D004357 2.1e-57 226.9 313 54.6
QL03p011008 Quercus lobata HOM05D005826 ORTHO05D004357 4.0e-56 222.6 295 57.3
Prupe.6G304400 Prunus persica HOM05D005826 ORTHO05D004357 6.8e-56 221.9 304 55.6
Dinv24515 Davidia involucrata HOM05D005826 ORTHO05D004357 5.8e-55 218.8 314 53.5
BcaNung03909 Brassica carinata HOM05D005826 ORTHO05D004357 1.9e-53 213.8 224 59.4
FAN05G0435 Fragaria x ananassa HOM05D005826 ORTHO05D004357 4.1e-53 212.6 302 55.3
Nitab4.5_0002516g0020 Nicotiana tabacum HOM05D005826 ORTHO05D004357 2.1e-52 210.3 337 43.9
Potri.005G002700 Populus trichocarpa HOM05D005826 ORTHO05D004357 2.7e-52 209.9 301 52.5
MBI12_g27791_MAGBIO Magnolia biondii HOM05D005826 ORTHO05D004357 1.5e-50 204.1 189 56.1
Gohir.A13G177700 Gossypium hirsutum HOM05D005826 ORTHO05D004357 1.6e-49 200.7 305 51.8
Sabra05G0000100 Salix brachista HOM05D005826 ORTHO05D004357 1.8e-48 197.2 304 51.6
Sabra05G0014200 Salix brachista HOM05D005826 ORTHO05D004357 1.8e-48 197.2 304 51.6
SMO196G0190 Selaginella moellendorffii HOM05D005826 ORTHO05D004357 3.1e-48 196.4 179 59.8
Nitab4.5_0005662g0030 Nicotiana tabacum HOM05D005826 ORTHO05D004357 6.8e-48 195.3 302 44.0
PSO210G7107 Papaver somniferum HOM05D005826 ORTHO05D004357 4.4e-47 192.6 305 49.8
CDE01G0499 Ceratophyllum demersum HOM05D005826 ORTHO05D004357 5.8e-47 192.2 304 52.6
PSO761G0619 Papaver somniferum HOM05D005826 ORTHO05D004357 7.1e-45 185.3 308 50.6
CBR_g48434 Chara braunii HOM05D005826 ORTHO05D004357 1.9e-42 177.2 119 68.9
MBI09_g02136_MAGBIO Magnolia biondii HOM05D005826 ORTHO05D004357 2.6e-39 166.8 189 50.8
AagrBONN_evm.TU.Sc2ySwM_362.2503 Anthoceros agrestis HOM05D005826 ORTHO05D004357 3.8e-38 162.9 137 60.6
Os04g0115400 Oryza sativa ssp. japonica HOM05D005826 ORTHO05D004357 3.2e-37 159.8 118 65.3
MBI12_g47801_MAGBIO Magnolia biondii HOM05D005826 ORTHO05D004357 6.9e-32 142.1 167 47.9
MBI06_g28828_MAGBIO Magnolia biondii HOM05D005826 ORTHO05D004357 4.9e-30 136.0 158 51.3
Potri.013G002100 Populus trichocarpa HOM05D005826 ORTHO05D004357 1.9e-26 124.0 163 62.0
Cre03.g201250 Chlamydomonas reinhardtii HOM05D005826 ORTHO05D004357 7.4e-26 122.1 134 52.2
BraA06t26622Z Brassica rapa HOM05D005826 ORTHO05D004357 1.6e-25 120.9 118 59.3
BcaNung03680 Brassica carinata HOM05D005826 ORTHO05D004357 2.1e-25 120.6 218 45.0
MELO3C015241.2 Cucumis melo HOM05D005826 ORTHO05D004357 8.1e-25 118.6 79 70.9
BolC7t44686H Brassica oleracea HOM05D005826 ORTHO05D004357 4.0e-24 116.3 217 44.2
C07p41530 Brassica napus HOM05D005826 ORTHO05D004357 3.4e-23 113.2 97 68.0
MELO3C021663.2 Cucumis melo HOM05D005826 ORTHO05D004357 2.5e-21 107.1 66 78.8
A06p36960 Brassica napus HOM05D005826 ORTHO05D004357 4.8e-17 92.8 54 85.2
PGSC0003DMG400018243 Solanum tuberosum HOM05D005826 ORTHO05D004357 2.4e-16 90.5 130 54.6
PGR083G0870 Punica granatum HOM05D005826 ORTHO05D004357 2.6e-15 87.0 131 45.8
Os05g0229475 Oryza sativa ssp. japonica HOM05D005826 ORTHO05D004357 3.5e-12 76.6 48 70.8
RcHm_v2.0_Chr5g0030611 Rosa chinensis HOM05D006753 ORTHO05D008521 8.2e-09 65.5 99 42.4
Oeu023421.1 Olea europaea HOM05D005826 ORTHO05D004357 1.1e-08 65.1 62 62.9
Migut.O00760 Erythranthe guttata HOM05D005826 ORTHO05D004357 1.8e-08 64.3 81 50.6
FAN11G3971 Fragaria x ananassa HOM05D006753 ORTHO05D008521 3.1e-08 63.5 105 40.0
FvH4_3g18161 Fragaria vesca HOM05D006753 ORTHO05D008521 1.5e-07 61.2 105 39.0
SEGI_04448 Sequoiadendron giganteum HOM05D008111 ORTHO05D010192 1.3e-06 58.2 55 47.3
SEGI_40829 Sequoiadendron giganteum HOM05D008111 ORTHO05D010192 1.3e-06 58.2 67 41.8
BcaC07g41240 Brassica carinata HOM05D006753 ORTHO05D008521 1.7e-06 57.8 59 49.2
A09p59170 Brassica napus HOM05D006753 ORTHO05D008521 1.7e-06 57.8 51 52.9
C08p42460 Brassica napus HOM05D006753 ORTHO05D008521 1.7e-06 57.8 59 49.2
BolC8t51807H Brassica oleracea HOM05D006753 ORTHO05D008521 1.7e-06 57.8 59 49.2
AUR62032899 Chenopodium quinoa HOM05D006753 ORTHO05D008521 1.7e-06 57.8 114 36.0
Os04g0114801 Oryza sativa ssp. japonica HOM05D005826 ORTHO05D004357 1.7e-06 57.8 57 52.6
Cfa018673 Carpinus fangiana HOM05D006753 ORTHO05D008521 2.2e-06 57.4 107 34.6
CiPaw.16G000900 Carya illinoinensis HOM05D006753 ORTHO05D008521 2.2e-06 57.4 115 36.5
ECA247G0541 Erigeron canadensis HOM05D002899 ORTHO05D003850 2.2e-06 57.4 48 52.1
BcaB08g34880 Brassica carinata HOM05D006753 ORTHO05D008521 2.9e-06 57.0 59 47.5
AUR62017753 Chenopodium quinoa HOM05D006753 ORTHO05D008521 2.9e-06 57.0 115 34.8
Cc11_g04160 Coffea canephora HOM05D006753 ORTHO05D008521 2.9e-06 57.0 67 46.3
Sed0018353 Sechium edule HOM05D005384 ORTHO05D006477 2.9e-06 57.0 88 39.8
Zm00001eb044950 Zea mays HOM05D006753 ORTHO05D008521 3.8e-06 56.6 107 35.5
Thecc.02G152400 Theobroma cacao HOM05D006753 ORTHO05D008521 5.0e-06 56.2 119 34.5
PSO063G3637 Papaver somniferum HOM05D005384 ORTHO05D006477 6.5e-06 55.8 66 45.5
TWI53G0448 Tripterygium wilfordii HOM05D006753 ORTHO05D008521 6.5e-06 55.8 117 35.0
Oeu006328.1 Olea europaea HOM05D006753 ORTHO05D008521 8.5e-06 55.5 111 36.0
Os10g0491900 Oryza sativa ssp. japonica HOM05D006753 ORTHO05D008521 8.5e-06 55.5 109 35.8
PSO782G4681 Papaver somniferum HOM05D005384 ORTHO05D006477 8.5e-06 55.5 66 45.5


User provided reference genes

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