Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT5G25240 Arabidopsis thaliana HOM05D001431 ORTHO05D001268 1.0e-72 276.6 132 100.0
AL6G36880 Arabidopsis lyrata HOM05D001431 ORTHO05D001268 1.5e-63 246.1 134 88.8
CARHR188250 Cardamine hirsuta HOM05D001431 ORTHO05D001268 9.0e-61 236.9 132 87.9
Thhalv10005131m.g Eutrema salsugineum HOM05D001431 ORTHO05D001268 6.4e-51 204.1 130 78.5
BcaB04g19797 Brassica carinata HOM05D001431 ORTHO05D001268 1.6e-49 199.5 132 76.5
Carub.0006s2305 Capsella rubella HOM05D001431 ORTHO05D001268 1.8e-48 196.1 143 74.8
Sp2g22300 Schrenkiella parvula HOM05D001431 ORTHO05D001268 3.0e-48 195.3 133 75.9
BcaNung06283 Brassica carinata HOM05D001431 ORTHO05D001268 1.3e-46 189.9 133 75.2
A09p06250 Brassica napus HOM05D001431 ORTHO05D001268 1.6e-46 189.5 133 74.4
C09p06900 Brassica napus HOM05D001431 ORTHO05D001268 1.6e-46 189.5 133 75.2
BraA09t36269Z Brassica rapa HOM05D001431 ORTHO05D001268 1.6e-46 189.5 133 74.4
BolC9t53610H Brassica oleracea HOM05D001431 ORTHO05D001268 2.8e-46 188.7 133 75.2
C02p59750 Brassica napus HOM05D001431 ORTHO05D001268 1.8e-45 186.0 133 73.7
BolC2t12031H Brassica oleracea HOM05D001431 ORTHO05D001268 6.9e-45 184.1 133 72.9
A02p39860 Brassica napus HOM05D001431 ORTHO05D001268 1.5e-44 183.0 133 72.9
BraA02t08948Z Brassica rapa HOM05D001431 ORTHO05D001268 4.5e-44 181.4 133 71.4
BcaC04g23577 Brassica carinata HOM05D001431 ORTHO05D001268 1.3e-38 163.3 124 72.6
THA.LOC104814117 Tarenaya hassleriana HOM05D001431 ORTHO05D001268 9.7e-31 137.1 120 59.2
Sabra06G0202700 Salix brachista HOM05D001431 ORTHO05D001268 1.1e-15 87.0 131 44.3
Lalb_Chr07g0179511 Lupinus albus HOM05D001431 ORTHO05D001268 2.0e-15 86.3 123 41.5
TPR.G15780 Trifolium pratense HOM05D001431 ORTHO05D001268 2.0e-15 86.3 119 42.0
Psat4g033120 Pisum sativum HOM05D001431 ORTHO05D001268 5.7e-15 84.7 121 41.3
Potri.006G259300 Populus trichocarpa HOM05D001431 ORTHO05D001268 9.7e-15 84.0 129 42.6
Medtr4g116530 Medicago truncatula HOM05D001431 ORTHO05D001268 2.8e-14 82.4 121 40.5
Duzib168G0286 Durio zibethinus HOM05D001431 ORTHO05D001268 4.8e-14 81.6 119 41.2
Hma1.2p1_1784F.1_g302160 Hydrangea macrophylla HOM05D001431 ORTHO05D001268 4.8e-14 81.6 123 41.5
Thecc.09G141800 Theobroma cacao HOM05D001431 ORTHO05D001268 6.3e-14 81.3 123 46.3
arahy.Tifrunner.gnm1.ann1.KMWM4V Arachis hypogaea HOM05D001431 ORTHO05D001268 1.1e-13 80.5 127 41.7
EL10Ac8g18816 Beta vulgaris HOM05D001431 ORTHO05D001268 1.1e-13 80.5 141 39.0
ClCG06G012050 Citrullus lanatus HOM05D001431 ORTHO05D001268 1.1e-13 80.5 109 43.1
Hma1.2p1_0949F.1_g240600 Hydrangea macrophylla HOM05D001431 ORTHO05D001268 1.4e-13 80.1 123 40.7
Gohir.D06G102000 Gossypium hirsutum HOM05D001431 ORTHO05D001268 3.1e-13 79.0 105 44.8
Lj6g0025598 Lotus japonicus HOM05D001431 ORTHO05D001268 3.1e-13 79.0 121 40.5
Manes.14G138600 Manihot esculenta HOM05D001431 ORTHO05D001268 4.1e-13 78.6 121 40.5
Psat0ss25082g0080 Pisum sativum HOM05D001431 ORTHO05D001268 4.1e-13 78.6 121 42.1
COL.COLO4_18913 Corchorus olitorius HOM05D001431 ORTHO05D001268 7.0e-13 77.8 134 41.0
QL02p091314 Quercus lobata HOM05D001431 ORTHO05D001268 9.1e-13 77.4 129 38.0
HanXRQChr03g0064021 Helianthus annuus HOM05D001431 ORTHO05D001268 1.2e-12 77.0 106 44.3
Prupe.1G486100 Prunus persica HOM05D001431 ORTHO05D001268 1.2e-12 77.0 107 46.7
TWI34G1362 Tripterygium wilfordii HOM05D001431 ORTHO05D001268 1.2e-12 77.0 110 40.9
Duzib187G1968 Durio zibethinus HOM05D001431 ORTHO05D001268 2.6e-12 75.9 131 39.7
TAR383G0017 Trochodendron aralioides HOM05D001431 ORTHO05D001268 2.6e-12 75.9 107 44.9
Gohir.A06G099800 Gossypium hirsutum HOM05D001431 ORTHO05D001268 3.5e-12 75.5 105 43.8
ECA240G3019 Erigeron canadensis HOM05D001431 ORTHO05D001268 4.5e-12 75.1 117 44.4
Phvul.003G174800 Phaseolus vulgaris HOM05D001431 ORTHO05D001268 4.5e-12 75.1 110 43.6
Gorai.010G117000 Gossypium raimondii HOM05D001431 ORTHO05D001268 5.9e-12 74.7 105 42.9
Rhsim03G0254500 Rhododendron simsii HOM05D001431 ORTHO05D001268 5.9e-12 74.7 121 38.8
Migut.K00377 Erythranthe guttata HOM05D001431 ORTHO05D001268 7.7e-12 74.3 123 42.3
Glyma.17G105000 Glycine max HOM05D001431 ORTHO05D001268 7.7e-12 74.3 119 40.3
TPR.G22802 Trifolium pratense HOM05D001431 ORTHO05D001268 7.7e-12 74.3 121 38.8
TAR626G1912 Trochodendron aralioides HOM05D001431 ORTHO05D001268 7.7e-12 74.3 109 43.1
CSS0009490 Camellia sinensis var. sinensis HOM05D001431 ORTHO05D001268 1.0e-11 73.9 106 43.4
Medtr2g461190 Medicago truncatula HOM05D001431 ORTHO05D001268 1.0e-11 73.9 121 39.7
CsaV3_1G028510 Cucumis sativus L. HOM05D001431 ORTHO05D001268 1.3e-11 73.6 119 36.1
Manes.16G126000 Manihot esculenta HOM05D001431 ORTHO05D001268 1.3e-11 73.6 128 42.2
AUR62041452 Chenopodium quinoa HOM05D001431 ORTHO05D001268 1.7e-11 73.2 138 38.4
MELO3C010262.2 Cucumis melo HOM05D001431 ORTHO05D001268 1.7e-11 73.2 108 38.9
Duzib168G0421 Durio zibethinus HOM05D001431 ORTHO05D001268 1.7e-11 73.2 122 43.4
Glyma.15G202100 Glycine max HOM05D001431 ORTHO05D001268 2.2e-11 72.8 123 38.2
AUR62011255 Chenopodium quinoa HOM05D001431 ORTHO05D001268 2.9e-11 72.4 139 36.7
Glyma.09G095800 Glycine max HOM05D001431 ORTHO05D001268 2.9e-11 72.4 126 40.5
Ca_27061_v3 Cicer arietinum L. HOM05D001431 ORTHO05D001268 3.8e-11 72.0 120 40.0
Manes.03G011900 Manihot esculenta HOM05D001431 ORTHO05D001268 3.8e-11 72.0 129 38.8
Glyma.13G157400 Glycine max HOM05D001431 ORTHO05D001268 6.5e-11 71.2 123 38.2
Ciclev10010491m.g Citrus clementina HOM05D001431 ORTHO05D001268 8.5e-11 70.9 118 44.1
Duzib187G1758 Durio zibethinus HOM05D001431 ORTHO05D001268 8.5e-11 70.9 108 41.7
VMungo1215G3003 Vigna mungo HOM05D001431 ORTHO05D001268 8.5e-11 70.9 131 37.4
Lalb_Chr11g0072871 Lupinus albus HOM05D001431 ORTHO05D001268 1.1e-10 70.5 122 39.3
MD15G1130700 Malus domestica HOM05D001431 ORTHO05D001268 1.1e-10 70.5 67 53.7
Eucgr.C02729 Eucalyptus grandis HOM05D001431 ORTHO05D001268 1.9e-10 69.7 113 41.6
Cpa.g.sc187.26 Carica papaya HOM05D001431 ORTHO05D001268 2.5e-10 69.3 113 38.9
Migut.K00665 Erythranthe guttata HOM05D001431 ORTHO05D001268 2.5e-10 69.3 121 39.7
RcHm_v2.0_Chr2g0086671 Rosa chinensis HOM05D001431 ORTHO05D001268 2.5e-10 69.3 142 31.0
COL.COLO4_24101 Corchorus olitorius HOM05D001431 ORTHO05D001268 3.2e-10 68.9 115 39.1
Peaxi162Scf00391g00002 Petunia axillaris HOM05D001431 ORTHO05D001268 4.2e-10 68.6 102 37.3
Eucgr.C02728 Eucalyptus grandis HOM05D001431 ORTHO05D001268 5.5e-10 68.2 113 40.7
VMungo1309G2763 Vigna mungo HOM05D001431 ORTHO05D001268 5.5e-10 68.2 131 36.6
MBI15_g10642_MAGBIO Magnolia biondii HOM05D001431 ORTHO05D001268 7.2e-10 67.8 134 36.6
Migut.K00653 Erythranthe guttata HOM05D001431 ORTHO05D001268 9.4e-10 67.4 121 38.8
Oeu042713.1 Olea europaea HOM05D001431 ORTHO05D001268 1.2e-09 67.0 121 37.2
Ah.14g078760 Amaranthus hybridus HOM05D001431 ORTHO05D001268 1.6e-09 66.6 88 40.9
QL02p091271 Quercus lobata HOM05D001431 ORTHO05D001268 1.6e-09 66.6 126 38.9
Sabra18G0097100 Salix brachista HOM05D001431 ORTHO05D001268 1.6e-09 66.6 101 42.6
Lsat_1_v5_gn_7_47921 Lactuca sativa HOM05D001431 ORTHO05D001268 2.1e-09 66.2 127 40.2
Solyc07g007130.1 Solanum lycopersicum HOM05D001431 ORTHO05D001268 2.1e-09 66.2 124 34.7
Sopen07g003180 Solanum pennellii HOM05D001431 ORTHO05D001268 2.1e-09 66.2 124 34.7
FvH4_1g01721 Fragaria vesca HOM05D001431 ORTHO05D001268 2.7e-09 65.9 133 31.6
FAN19G1266 Fragaria x ananassa HOM05D001431 ORTHO05D001268 2.7e-09 65.9 133 31.6
Nitab4.5_0011752g0010 Nicotiana tabacum HOM05D001431 ORTHO05D001268 2.7e-09 65.9 124 35.5
CiPaw.07G227000 Carya illinoinensis HOM05D001431 ORTHO05D001268 3.6e-09 65.5 114 40.4
Nn8g39717 Nelumbo nucifera HOM05D001431 ORTHO05D001268 6.1e-09 64.7 120 39.2
Actinidia14101 Actinidia chinensis HOM05D001431 ORTHO05D001268 8.0e-09 64.3 110 41.8
Ah.09g223880 Amaranthus hybridus HOM05D001431 ORTHO05D001268 8.0e-09 64.3 62 48.4
Ciclev10010338m.g Citrus clementina HOM05D001431 ORTHO05D001268 8.0e-09 64.3 99 38.4
PGSC0003DMG400030698 Solanum tuberosum HOM05D001431 ORTHO05D001268 8.0e-09 64.3 107 37.4
Lsat_1_v5_gn_8_63180 Lactuca sativa HOM05D001431 ORTHO05D001268 1.0e-08 63.9 113 39.8
FvH4_2g28310 Fragaria vesca HOM05D001431 ORTHO05D001268 1.4e-08 63.5 115 38.3
PGR142G0349 Punica granatum HOM05D001431 ORTHO05D001268 1.4e-08 63.5 133 35.3
MSTRG.6092 Avicennia marina HOM05D001431 ORTHO05D001268 1.8e-08 63.2 118 36.4
SGA_v2.0_scaffold224G42972 Striga asiatica HOM05D001431 ORTHO05D001268 1.8e-08 63.2 109 37.6
Potri.006G190100 Populus trichocarpa HOM05D001431 ORTHO05D001268 2.3e-08 62.8 104 41.3
Sed0026439 Sechium edule HOM05D001431 ORTHO05D001268 2.3e-08 62.8 117 35.9
Atru.chr7.2499 Acer truncatum HOM05D001431 ORTHO05D001268 3.0e-08 62.4 138 33.3
Cc06_g07420 Coffea canephora HOM05D001431 ORTHO05D001268 5.2e-08 61.6 109 35.8
CANSAT11G0265 Cannabis sativa HOM05D001431 ORTHO05D001268 6.7e-08 61.2 67 46.3
HanXRQChr06g0181721 Helianthus annuus HOM05D001431 ORTHO05D001268 6.7e-08 61.2 78 43.6
Gohir.A06G050000 Gossypium hirsutum HOM05D001431 ORTHO05D001268 8.8e-08 60.8 112 37.5
HanXRQChr05g0137941 Helianthus annuus HOM05D001431 ORTHO05D001268 8.8e-08 60.8 65 46.2
Lju41C33T14 Lonicera japonica HOM05D001431 ORTHO05D001268 8.8e-08 60.8 121 35.5
Atru.chr7.261 Acer truncatum HOM05D001431 ORTHO05D001268 1.2e-07 60.5 123 32.5
DCAR_020906 Daucus carota HOM05D001431 ORTHO05D001268 1.2e-07 60.5 63 50.8
Phvul.009G209600 Phaseolus vulgaris HOM05D001431 ORTHO05D001268 1.2e-07 60.5 115 35.7
Sabra15G0097900 Salix brachista HOM05D001431 ORTHO05D001268 1.2e-07 60.5 66 48.5
MSTRG.26316 Avicennia marina HOM05D001431 ORTHO05D001268 1.5e-07 60.1 127 35.4
CAN.G518.20 Capsicum annuum HOM05D001431 ORTHO05D001268 1.5e-07 60.1 79 43.0
Gorai.010G056200 Gossypium raimondii HOM05D001431 ORTHO05D001268 1.5e-07 60.1 114 38.6
CDE10G0680 Ceratophyllum demersum HOM05D001431 ORTHO05D001268 2.0e-07 59.7 87 42.5
AUR62008241 Chenopodium quinoa HOM05D001431 ORTHO05D001268 2.0e-07 59.7 63 52.4
AUR62030993 Chenopodium quinoa HOM05D001431 ORTHO05D001268 2.0e-07 59.7 63 52.4
ECA236G0145 Erigeron canadensis HOM05D001431 ORTHO05D001268 2.0e-07 59.7 110 36.4
Cfa007450 Carpinus fangiana HOM05D001431 ORTHO05D001268 2.6e-07 59.3 79 38.0
Cfa020891 Carpinus fangiana HOM05D001431 ORTHO05D001268 2.6e-07 59.3 98 37.8
FAN20G3221 Fragaria x ananassa HOM05D001431 ORTHO05D001268 2.6e-07 59.3 104 38.5
FAN27G3025 Fragaria x ananassa HOM05D001431 ORTHO05D001268 2.6e-07 59.3 104 38.5
Nitab4.5_0007803g0040 Nicotiana tabacum HOM05D001431 ORTHO05D001268 2.6e-07 59.3 78 43.6
RcHm_v2.0_Chr6g0297221 Rosa chinensis HOM05D001431 ORTHO05D001268 2.6e-07 59.3 105 39.0
CAN.G628.72 Capsicum annuum HOM05D001431 ORTHO05D001268 3.3e-07 58.9 66 43.9
Nitab4.5_0001952g0050 Nicotiana tabacum HOM05D001431 ORTHO05D001268 4.4e-07 58.5 71 45.1
Nitab4.5_0007879g0040 Nicotiana tabacum HOM05D001431 ORTHO05D001268 4.4e-07 58.5 71 45.1
Actinidia26350 Actinidia chinensis HOM05D000320 ORTHO05D000532 5.7e-07 58.2 69 47.8
Potri.015G073800 Populus trichocarpa HOM05D001431 ORTHO05D001268 5.7e-07 58.2 91 41.8
Potri.018G114200 Populus trichocarpa HOM05D001431 ORTHO05D001268 5.7e-07 58.2 102 40.2
TPR.G24028 Trifolium pratense HOM05D001431 ORTHO05D001268 5.7e-07 58.2 64 48.4
Hma1.2p1_0701F.1_g205980 Hydrangea macrophylla HOM05D001431 ORTHO05D001268 7.5e-07 57.8 63 46.0
Eucgr.C00435 Eucalyptus grandis HOM05D001431 ORTHO05D001268 9.7e-07 57.4 115 33.9
Sed0006170 Sechium edule HOM05D001431 ORTHO05D001268 9.7e-07 57.4 124 37.1
Ca_21613_v3 Cicer arietinum L. HOM05D001431 ORTHO05D001268 1.3e-06 57.0 85 41.2
PGR044G0236 Punica granatum HOM05D001431 ORTHO05D001268 1.3e-06 57.0 126 34.1
MELO3C021529.2 Cucumis melo HOM05D001431 ORTHO05D001268 1.7e-06 56.6 83 39.8
Hma1.2p1_0182F.1_g080500 Hydrangea macrophylla HOM05D001431 ORTHO05D001268 1.7e-06 56.6 119 35.3
Sed0005869 Sechium edule HOM05D001431 ORTHO05D001268 1.7e-06 56.6 105 38.1
Sc18g0000050 Simmondsia chinensis HOM05D001431 ORTHO05D001268 1.7e-06 56.6 111 37.8
HanXRQChr09g0272321 Helianthus annuus HOM05D001431 ORTHO05D001268 2.2e-06 56.2 93 35.5
MD09G1036100 Malus domestica HOM05D001431 ORTHO05D001268 2.2e-06 56.2 78 41.0
PGSC0003DMG400026998 Solanum tuberosum HOM05D001431 ORTHO05D001268 2.2e-06 56.2 78 42.3
EL10Ac5g10788 Beta vulgaris HOM05D001431 ORTHO05D001268 2.8e-06 55.8 135 37.8
CANSAT64G0073 Cannabis sativa HOM05D001431 ORTHO05D001268 2.8e-06 55.8 112 35.7
CDE10G0322 Ceratophyllum demersum HOM05D000154 ORTHO05D000092 2.8e-06 55.8 106 37.7
FAN09G1609 Fragaria x ananassa HOM05D001431 ORTHO05D001268 2.8e-06 55.8 86 41.9
Nitab4.5_0000003g0460 Nicotiana tabacum HOM05D001431 ORTHO05D001268 2.8e-06 55.8 76 43.4
Peaxi162Scf00108g00002 Petunia axillaris HOM05D001431 ORTHO05D001268 2.8e-06 55.8 71 36.6
unitig_750.g28474 Utricularia gibba HOM05D001431 ORTHO05D001268 2.8e-06 55.8 66 39.4
FAN02G3568 Fragaria x ananassa HOM05D001431 ORTHO05D001268 3.7e-06 55.5 85 41.2
FAN05G1435 Fragaria x ananassa HOM05D001431 ORTHO05D001268 3.7e-06 55.5 85 41.2
HanXRQChr02g0037191 Helianthus annuus HOM05D001431 ORTHO05D001268 3.7e-06 55.5 54 50.0
Sopen02g031790 Solanum pennellii HOM05D001431 ORTHO05D001268 3.7e-06 55.5 102 36.3
Ca_04210_v3 Cicer arietinum L. HOM05D001431 ORTHO05D001268 4.8e-06 55.1 65 43.1
Medtr4g106650 Medicago truncatula HOM05D001431 ORTHO05D001268 4.8e-06 55.1 69 46.4
Rhsim12G0163100 Rhododendron simsii HOM05D001431 ORTHO05D001268 4.8e-06 55.1 114 36.8
Solyc02g087030.1 Solanum lycopersicum HOM05D001431 ORTHO05D001268 4.8e-06 55.1 102 36.3
Cfa019090 Carpinus fangiana HOM05D001431 ORTHO05D001268 6.3e-06 54.7 71 45.1
Ca_16200_v3 Cicer arietinum L. HOM05D001431 ORTHO05D001268 6.3e-06 54.7 72 43.1
ClCG09G018820 Citrullus lanatus HOM05D001431 ORTHO05D001268 6.3e-06 54.7 83 38.6
Sed0025664 Sechium edule HOM05D001431 ORTHO05D001268 6.3e-06 54.7 57 47.4
Solyc05g039960.1 Solanum lycopersicum HOM05D001431 ORTHO05D001268 6.3e-06 54.7 102 36.3
Solyc06g071370.1 Solanum lycopersicum HOM05D001431 ORTHO05D001268 6.3e-06 54.7 106 36.8
Sopen06g027650 Solanum pennellii HOM05D001431 ORTHO05D001268 6.3e-06 54.7 106 36.8
CiPaw.15G181700 Carya illinoinensis HOM05D001431 ORTHO05D001268 8.2e-06 54.3 110 32.7
CsaV3_5G037310 Cucumis sativus L. HOM05D001431 ORTHO05D001268 8.2e-06 54.3 83 38.6
Lsat_1_v5_gn_1_26501 Lactuca sativa HOM05D001431 ORTHO05D001268 8.2e-06 54.3 64 43.8


User provided reference genes

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