Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT5G24830 Arabidopsis thaliana HOM05D000880 ORTHO05D009684 8.0e-117 425.2 594 100.0
AL6G36470 Arabidopsis lyrata HOM05D000880 ORTHO05D009684 8.9e-92 342.0 289 92.0
Carub.0006s2268 Capsella rubella HOM05D000880 ORTHO05D009684 5.4e-89 332.8 289 89.6
Thhalv10003880m.g Eutrema salsugineum HOM05D000880 ORTHO05D009684 1.2e-80 305.1 289 84.4
Sp2g22620 Schrenkiella parvula HOM05D000880 ORTHO05D009684 3.5e-80 303.5 289 85.1
CARHR188620 Cardamine hirsuta HOM05D000880 ORTHO05D009684 1.3e-79 301.6 289 84.8
C07p42940 Brassica napus HOM05D000880 ORTHO05D009684 1.5e-75 288.1 290 82.8
A06p35600 Brassica napus HOM05D000880 ORTHO05D009684 2.6e-75 287.3 290 82.8
BraA06t26485Z Brassica rapa HOM05D000880 ORTHO05D009684 9.9e-75 285.4 290 82.4
BolC7t44823H Brassica oleracea HOM05D000880 ORTHO05D009684 3.8e-74 283.5 291 82.5
Aa31LG10G9610 Aethionema arabicum HOM05D000880 ORTHO05D009684 2.5e-49 201.1 312 60.9
BcaNung01260 Brassica carinata HOM05D000880 ORTHO05D009684 7.1e-49 199.5 159 64.2
Aa31LG10G9680 Aethionema arabicum HOM05D000880 ORTHO05D009684 4.3e-46 190.3 312 65.7
Cfa013251 Carpinus fangiana HOM05D000880 ORTHO05D008158 6.9e-28 129.8 299 55.9
MD08G1133900 Malus domestica HOM05D000880 ORTHO05D009684 3.4e-27 127.5 300 54.3
RcHm_v2.0_Chr6g0312241 Rosa chinensis HOM05D000880 ORTHO05D009684 2.2e-26 124.8 302 56.0
Atru.chr7.2671 Acer truncatum HOM05D000880 ORTHO05D009684 2.9e-26 124.4 301 52.2
Cpa.g.sc10.206 Carica papaya HOM05D000880 ORTHO05D009684 5.0e-26 123.6 295 56.9
Prupe.1G462500 Prunus persica HOM05D000880 ORTHO05D009684 2.5e-25 121.3 306 51.6
CiPaw.07G214800 Carya illinoinensis HOM05D000880 ORTHO05D009684 7.2e-25 119.8 306 55.2
FAN20G2124 Fragaria x ananassa HOM05D000880 ORTHO05D009684 2.7e-24 117.9 299 54.2
FAN24G3119 Fragaria x ananassa HOM05D000880 ORTHO05D009684 2.7e-24 117.9 300 54.3
QL12p024656 Quercus lobata HOM05D000880 ORTHO05D009684 2.7e-24 117.9 304 54.6
Thecc.09G004700 Theobroma cacao HOM05D000880 ORTHO05D009684 2.3e-23 114.8 174 40.8
Actinidia06447 Actinidia chinensis HOM05D000880 ORTHO05D009684 5.2e-23 113.6 297 53.9
Ciclev10007859m.g Citrus clementina HOM05D000880 ORTHO05D009684 3.3e-22 110.9 294 56.5
Manes.07G088100 Manihot esculenta HOM05D000880 ORTHO05D009684 2.8e-21 107.8 291 52.6
arahy.Tifrunner.gnm1.ann1.D3X7TW Arachis hypogaea HOM05D005666 ORTHO05D007183 6.3e-21 106.7 301 51.2
Haze_21694 Corylus avellana HOM05D000880 ORTHO05D009684 2.4e-20 104.8 246 60.6
arahy.Tifrunner.gnm1.ann1.CHY0RW Arachis hypogaea HOM05D000880 ORTHO05D009684 3.1e-20 104.4 301 51.2
CSS0007644 Camellia sinensis var. sinensis HOM05D000880 ORTHO05D009684 9.1e-20 102.8 269 55.4
TAR626G1204 Trochodendron aralioides HOM05D000880 ORTHO05D009684 2.0e-19 101.7 296 51.7
Dinv15656 Davidia involucrata HOM05D000880 ORTHO05D009684 2.6e-19 101.3 297 51.2
PGR044G0315 Punica granatum HOM05D000880 ORTHO05D009684 4.5e-19 100.5 301 50.2
CANSAT78G1387 Cannabis sativa HOM05D000880 ORTHO05D009684 5.0e-18 97.1 294 51.4
Hund04480 Selenicereus undatus HOM05D000880 ORTHO05D009684 8.5e-18 96.3 221 62.9
Lalb_Chr03g0032741 Lupinus albus HOM05D000880 ORTHO05D009684 2.5e-17 94.7 302 48.7
vmacro08195 Vaccinium macrocarpon HOM05D000880 ORTHO05D009684 3.2e-17 94.4 167 35.9
Rhsim04G0217100 Rhododendron simsii HOM05D000880 ORTHO05D009684 5.5e-17 93.6 291 53.6
ClCG08G012780 Citrullus lanatus HOM05D006422 ORTHO05D007992 9.4e-17 92.8 295 50.5
FAN27G3148 Fragaria x ananassa HOM05D000880 ORTHO05D009684 2.7e-16 91.3 231 60.6
FvH4_2g30660 Fragaria vesca HOM05D000880 ORTHO05D009684 4.7e-16 90.5 231 60.6
MELO3C011202.2 Cucumis melo HOM05D000880 ORTHO05D009684 1.4e-15 89.0 296 50.7
Sabra18G0001200 Salix brachista HOM05D000880 ORTHO05D009684 2.3e-15 88.2 298 50.3
Sabra18G0010100 Salix brachista HOM05D000880 ORTHO05D009684 4.0e-15 87.4 298 50.3
CsaV3_2G031530 Cucumis sativus L. HOM05D000880 ORTHO05D009684 1.5e-14 85.5 234 58.1
Nn8g39798 Nelumbo nucifera HOM05D000880 ORTHO05D009684 4.4e-14 84.0 147 34.0
Nitab4.5_0000502g0180 Nicotiana tabacum HOM05D000880 ORTHO05D009684 9.7e-14 82.8 291 50.5
Potri.018G004400 Populus trichocarpa HOM05D000880 ORTHO05D009684 2.8e-13 81.3 298 48.3
Migut.E01433 Erythranthe guttata HOM05D000880 ORTHO05D009684 1.8e-12 78.6 282 50.7
Phvul.011G207000 Phaseolus vulgaris HOM05D000880 ORTHO05D009684 1.8e-12 78.6 288 51.0
Eucgr.H00073 Eucalyptus grandis HOM05D000880 ORTHO05D009684 3.1e-12 77.8 170 30.6
VMungo1127G1257 Vigna mungo HOM05D000880 ORTHO05D009684 4.1e-12 77.4 293 49.5
Lj6C69T3 Lonicera japonica HOM05D000880 ORTHO05D009684 5.3e-12 77.0 293 49.5
Sed0004667 Sechium edule HOM05D000880 ORTHO05D009684 5.3e-12 77.0 300 43.7
Oeu040613.1 Olea europaea HOM05D000880 ORTHO05D009684 1.6e-11 75.5 156 33.3
EL10Ac6g15284 Beta vulgaris HOM05D000880 ORTHO05D009684 3.5e-11 74.3 91 45.1
Lj4A910T18 Lonicera japonica HOM05D000880 ORTHO05D009684 5.9e-11 73.6 171 33.3
Medtr1g010020 Medicago truncatula HOM05D000880 ORTHO05D009684 1.0e-10 72.8 155 31.0
vmacro08192 Vaccinium macrocarpon HOM05D000880 ORTHO05D009684 1.3e-10 72.4 148 31.8
Aqoxy5G01876 Aquilegia oxysepala HOM05D000880 ORTHO05D009684 1.7e-10 72.0 251 55.8
ECA232G0576 Erigeron canadensis HOM05D000880 ORTHO05D009684 1.1e-09 69.3 90 42.2
Glyma.13G197400 Glycine max HOM05D000880 ORTHO05D009684 2.5e-09 68.2 208 52.4
Solyc03g120070.4 Solanum lycopersicum HOM05D000880 ORTHO05D009684 2.5e-09 68.2 287 50.5
CiPaw.15G081300 Carya illinoinensis HOM05D000880 ORTHO05D009684 3.2e-09 67.8 77 44.2
MBI13_g01685_MAGBIO Magnolia biondii HOM05D000880 ORTHO05D001950 3.2e-09 67.8 146 29.5
BcaB02g09816 Brassica carinata HOM05D000880 ORTHO05D009684 4.2e-09 67.4 42 81.0
AUR62017906 Chenopodium quinoa HOM05D000880 ORTHO05D009684 4.2e-09 67.4 91 42.9
Cc08_g06370 Coffea canephora HOM05D000880 ORTHO05D009684 4.2e-09 67.4 163 33.1
TPR.G12115 Trifolium pratense HOM05D000880 ORTHO05D009684 4.2e-09 67.4 168 28.0
AUR62003593 Chenopodium quinoa HOM05D000880 ORTHO05D009684 5.5e-09 67.0 91 42.9
PGSC0003DMG400005692 Solanum tuberosum HOM05D000880 ORTHO05D009684 5.5e-09 67.0 156 34.0
Lsat_1_v5_gn_5_33201 Lactuca sativa HOM05D000880 ORTHO05D009684 9.4e-09 66.2 80 46.2
ECA236G3570 Erigeron canadensis HOM05D000705 ORTHO05D002970 3.6e-08 64.3 90 40.0
Sopen03g038940 Solanum pennellii HOM05D000880 ORTHO05D009684 4.7e-08 63.9 156 32.1
Ca_12883_v3 Cicer arietinum L. HOM05D000880 ORTHO05D009684 6.1e-08 63.5 87 36.8
GSVIVG01003996001 Vitis vinifera HOM05D000880 ORTHO05D009684 6.1e-08 63.5 191 65.4
Haze_10332 Corylus avellana HOM05D000880 ORTHO05D009684 8.0e-08 63.2 165 72.1
Lj3g0007027 Lotus japonicus HOM05D000880 ORTHO05D009684 8.0e-08 63.2 175 26.3
Sc07g0001710 Simmondsia chinensis HOM05D000880 ORTHO05D009684 1.4e-07 62.4 92 34.8
HanXRQChr07g0202221 Helianthus annuus HOM05D000880 ORTHO05D009684 1.8e-07 62.0 96 39.6
Psat6g031840 Pisum sativum HOM05D000880 ORTHO05D009684 2.3e-07 61.6 167 27.5
SalBow8G2909 Salvia bowleyana HOM05D004918 ORTHO05D005706 1.5e-06 58.9 278 47.8
Ah.02g121750 Amaranthus hybridus HOM05D000880 ORTHO05D009684 2.0e-06 58.5 221 57.5


User provided reference genes

Program Settings