Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT5G24680 Arabidopsis thaliana HOM05D006040 ORTHO05D007134 2.6e-228 795.0 400 100.0
AL6G36290 Arabidopsis lyrata HOM05D006040 ORTHO05D007134 5.8e-204 714.1 400 88.5
Carub.0006s2254 Capsella rubella HOM05D006040 ORTHO05D007134 9.3e-202 706.8 403 84.9
Thhalv10004343m.g Eutrema salsugineum HOM05D006040 ORTHO05D007134 1.4e-197 693.0 399 82.0
Sp2g22720 Schrenkiella parvula HOM05D006040 ORTHO05D007134 4.9e-195 684.5 405 81.2
A06p35530 Brassica napus HOM05D006040 ORTHO05D007134 2.1e-182 642.5 404 78.0
BraA06t26478Z Brassica rapa HOM05D006040 ORTHO05D007134 9.3e-178 627.1 405 77.0
BolC7t44830H Brassica oleracea HOM05D006040 ORTHO05D007134 1.0e-176 623.6 406 75.6
C07p43010 Brassica napus HOM05D006040 ORTHO05D007134 2.3e-176 622.5 409 75.1
Aa31LG11G3920 Aethionema arabicum HOM05D006040 ORTHO05D007134 2.1e-153 546.2 488 58.2
BcaNung01250 Brassica carinata HOM05D006040 ORTHO05D007134 7.5e-151 537.7 419 66.8
THA.LOC104798996 Tarenaya hassleriana HOM05D006040 ORTHO05D007134 9.7e-151 537.3 401 66.3
Potri.012G004300 Populus trichocarpa HOM05D006040 ORTHO05D007134 2.9e-110 402.9 439 50.6
FAN20G2114 Fragaria x ananassa HOM05D006040 ORTHO05D007134 2.1e-108 396.7 449 47.9
FvH4_7g32290 Fragaria vesca HOM05D006040 ORTHO05D007134 3.5e-108 396.0 449 47.7
FAN06G3790 Fragaria x ananassa HOM05D006040 ORTHO05D007134 9.5e-106 387.9 446 46.6
Medtr5g068730 Medicago truncatula HOM05D006040 ORTHO05D007134 1.8e-104 383.6 450 48.4
Sed0006638 Sechium edule HOM05D006040 ORTHO05D007134 1.8e-104 383.6 450 47.6
Thecc.03G212500 Theobroma cacao HOM05D006040 ORTHO05D007134 8.9e-104 381.3 414 50.5
CANSAT21G0186 Cannabis sativa HOM05D006040 ORTHO05D007134 2.0e-103 380.2 423 48.7
MD07G1303900 Malus domestica HOM05D006040 ORTHO05D007134 2.0e-103 380.2 440 46.4
arahy.Tifrunner.gnm1.ann1.QSB9JP Arachis hypogaea HOM05D006040 ORTHO05D007134 4.4e-103 379.0 447 48.8
Psat2g061600 Pisum sativum HOM05D006040 ORTHO05D007134 4.4e-103 379.0 446 47.8
arahy.Tifrunner.gnm1.ann1.53C9AK Arachis hypogaea HOM05D006040 ORTHO05D007134 9.9e-103 377.9 447 48.5
Gorai.004G126800 Gossypium raimondii HOM05D006040 ORTHO05D007134 2.2e-102 376.7 419 49.2
ClCG02G007980 Citrullus lanatus HOM05D006040 ORTHO05D007134 3.7e-102 375.9 460 46.5
Manes.05G196800 Manihot esculenta HOM05D006040 ORTHO05D007134 3.7e-102 375.9 434 47.0
CsaV3_2G035690 Cucumis sativus L. HOM05D006040 ORTHO05D007134 6.4e-102 375.2 458 46.1
Glyma.02G220600 Glycine max HOM05D006040 ORTHO05D007134 1.4e-101 374.0 438 47.7
LjContig00155g0021870 Lotus japonicus HOM05D006040 ORTHO05D007134 1.4e-101 374.0 442 47.3
Sabra12G0000200 Salix brachista HOM05D006040 ORTHO05D007134 4.1e-101 372.5 371 52.6
Lalb_Chr10g0102951 Lupinus albus HOM05D006040 ORTHO05D007134 9.2e-101 371.3 466 46.1
TPR.G27916 Trifolium pratense HOM05D006040 ORTHO05D007134 9.2e-101 371.3 446 47.3
Prupe.2G322500 Prunus persica HOM05D006040 ORTHO05D007134 1.2e-100 370.9 448 46.2
TWI13G0007 Tripterygium wilfordii HOM05D006040 ORTHO05D007134 2.1e-100 370.2 445 46.5
TWI74G0239 Tripterygium wilfordii HOM05D006040 ORTHO05D007134 2.1e-100 370.2 445 46.5
Ca_05537_v3 Cicer arietinum L. HOM05D006040 ORTHO05D007134 4.6e-100 369.0 444 48.2
RcHm_v2.0_Chr1g0383341 Rosa chinensis HOM05D006040 ORTHO05D007134 4.6e-100 369.0 446 44.6
Atru.chr12.2497 Acer truncatum HOM05D006040 ORTHO05D007134 1.0e-99 367.9 418 48.3
Atru.chr12.2521 Acer truncatum HOM05D006040 ORTHO05D007134 1.0e-99 367.9 418 48.3
CARHR188790 Cardamine hirsuta HOM05D006040 ORTHO05D007134 1.3e-99 367.5 239 79.5
Cfa018660 Carpinus fangiana HOM05D006040 ORTHO05D007134 1.7e-99 367.1 470 45.1
MELO3C024776.2 Cucumis melo HOM05D006040 ORTHO05D007134 8.6e-99 364.8 364 51.9
Hund21080 Selenicereus undatus HOM05D006040 ORTHO05D007134 1.5e-98 364.0 424 46.7
Zm00001eb209800 Zea mays HOM05D006040 ORTHO05D007134 1.5e-98 364.0 421 45.4
FAN03G3503 Fragaria x ananassa HOM05D006040 ORTHO05D007134 1.9e-98 363.6 453 45.0
Lalb_Chr08g0239381 Lupinus albus HOM05D006040 ORTHO05D007134 2.5e-98 363.2 421 49.9
FAN10G2970 Fragaria x ananassa HOM05D006040 ORTHO05D007134 4.3e-98 362.5 453 44.2
FAN10G3876 Fragaria x ananassa HOM05D006040 ORTHO05D007134 7.3e-98 361.7 453 44.4
QL01p000066 Quercus lobata HOM05D006040 ORTHO05D007134 1.1e-96 357.8 492 43.1
Dinv29187 Davidia involucrata HOM05D006040 ORTHO05D007134 1.4e-96 357.5 467 43.9
TAR375G0263 Trochodendron aralioides HOM05D006040 ORTHO05D007134 1.8e-96 357.1 473 41.2
Rhsim09G0211300 Rhododendron simsii HOM05D006040 ORTHO05D007134 6.8e-96 355.1 445 44.5
Zm00001eb229510 Zea mays HOM05D006040 ORTHO05D007134 6.8e-96 355.1 426 44.4
Actinidia18692 Actinidia chinensis HOM05D006040 ORTHO05D007134 1.2e-95 354.4 450 44.4
Lj1g0004094 Lotus japonicus HOM05D006040 ORTHO05D007134 1.2e-95 354.4 416 48.1
Os02g0106700 Oryza sativa ssp. japonica HOM05D006040 ORTHO05D007134 7.6e-95 351.7 429 45.2
GSVIVG01038686001 Vitis vinifera HOM05D006040 ORTHO05D007134 1.7e-94 350.5 431 46.4
AUR62028121 Chenopodium quinoa HOM05D006040 ORTHO05D007134 2.2e-94 350.1 424 44.3
Hma1.2p1_1235F.1_g269220 Hydrangea macrophylla HOM05D006040 ORTHO05D007134 3.8e-94 349.4 459 42.9
Lj3C891T14 Lonicera japonica HOM05D006040 ORTHO05D007134 1.1e-93 347.8 345 52.5
PGR042G3864 Punica granatum HOM05D006040 ORTHO05D007134 3.2e-93 346.3 455 44.2
Eucgr.A00979 Eucalyptus grandis HOM05D006040 ORTHO05D007134 4.2e-93 345.9 452 43.6
Medtr3g093420 Medicago truncatula HOM05D006040 ORTHO05D007134 5.4e-93 345.5 405 47.9
AUR62005943 Chenopodium quinoa HOM05D006040 ORTHO05D007134 9.3e-93 344.7 424 44.6
VMungo0647G0797 Vigna mungo HOM05D006040 ORTHO05D007134 9.3e-93 344.7 421 46.8
Phvul.009G040600 Phaseolus vulgaris HOM05D006040 ORTHO05D007134 2.1e-92 343.6 419 47.0
TPR.G35913 Trifolium pratense HOM05D006040 ORTHO05D007134 3.5e-92 342.8 415 47.2
Nitab4.5_0000115g0200 Nicotiana tabacum HOM05D006040 ORTHO05D007134 6.0e-92 342.0 420 44.3
Cpa.g.sc3.191 Carica papaya HOM05D006040 ORTHO05D007134 1.0e-91 341.3 350 51.4
Migut.F00965 Erythranthe guttata HOM05D006040 ORTHO05D007134 1.7e-91 340.5 415 46.7
ATR0579G018 Amborella trichopoda HOM05D006040 ORTHO05D007134 5.1e-91 339.0 424 44.8
Cc02_g00560 Coffea canephora HOM05D006040 ORTHO05D007134 5.1e-91 339.0 433 44.3
Aqoxy3G00220 Aquilegia oxysepala HOM05D006040 ORTHO05D007134 6.6e-91 338.6 461 41.4
PGSC0003DMG400026928 Solanum tuberosum HOM05D006040 ORTHO05D007134 6.6e-91 338.6 427 44.5
PSO063G2217 Papaver somniferum HOM05D006040 ORTHO05D007134 2.5e-90 336.7 473 40.2
Ca_16841_v3 Cicer arietinum L. HOM05D006040 ORTHO05D007134 3.3e-90 336.3 338 53.8
SalBow2G1501 Salvia bowleyana HOM05D006040 ORTHO05D007134 3.3e-90 336.3 425 44.9
EL10Ac3g05126 Beta vulgaris HOM05D006040 ORTHO05D007134 7.3e-90 335.1 426 43.7
HanXRQChr14g0463001 Helianthus annuus HOM05D006040 ORTHO05D007134 7.3e-90 335.1 410 46.8
DCAR_010554 Daucus carota HOM05D006040 ORTHO05D007134 2.8e-89 333.2 432 44.9
Glyma.06G139400 Glycine max HOM05D006040 ORTHO05D007134 3.6e-89 332.8 414 47.6
SGA_v2.0_scaffold59G20786 Striga asiatica HOM05D006040 ORTHO05D007134 4.8e-89 332.4 421 45.6
HPP92_012812 Vanilla planifolia HOM05D006040 ORTHO05D007134 4.8e-89 332.4 436 41.5
MSTRG.18 Avicennia marina HOM05D006040 ORTHO05D007134 1.1e-88 331.3 430 44.4
Sopen06g029320 Solanum pennellii HOM05D006040 ORTHO05D007134 1.4e-88 330.9 429 44.5
Solyc06g072970.3 Solanum lycopersicum HOM05D006040 ORTHO05D007134 5.3e-88 328.9 429 43.8
Sc25g0001060 Simmondsia chinensis HOM05D006040 ORTHO05D007134 2.0e-87 327.0 333 49.8
Psat5g070440 Pisum sativum HOM05D006040 ORTHO05D007134 5.8e-87 325.5 339 51.9
Nitab4.5_0003012g0150 Nicotiana tabacum HOM05D006040 ORTHO05D007134 2.2e-86 323.6 464 40.5
ECA238G4129 Erigeron canadensis HOM05D006040 ORTHO05D007134 1.9e-85 320.5 408 48.5
PSO017G1458 Papaver somniferum HOM05D006040 ORTHO05D007134 2.4e-85 320.1 473 39.3
Lsat_1_v5_gn_8_36881 Lactuca sativa HOM05D006040 ORTHO05D007134 1.6e-84 317.4 404 42.6
Peaxi162Scf00815g00228 Petunia axillaris HOM05D006040 ORTHO05D007134 2.7e-84 316.6 317 50.8
unitig_578.g16670 Utricularia gibba HOM05D006040 ORTHO05D007134 6.6e-83 312.0 335 51.6
CAN.G65.140 Capsicum annuum HOM05D006040 ORTHO05D007134 1.1e-82 311.2 322 50.9
Phvul.008G187700 Phaseolus vulgaris HOM05D006040 ORTHO05D007134 4.8e-81 305.8 374 46.3
SEGI_40721 Sequoiadendron giganteum HOM05D006040 ORTHO05D007134 6.2e-81 305.4 488 37.9
Gohir.A08G107000 Gossypium hirsutum HOM05D006040 ORTHO05D007134 8.1e-81 305.1 419 43.7
CSS0020482 Camellia sinensis var. sinensis HOM05D006040 ORTHO05D007134 9.3e-77 291.6 355 47.0
FvH4_7g33360 Fragaria vesca HOM05D006040 ORTHO05D007134 8.7e-75 285.0 301 49.5
COL.COLO4_14403 Corchorus olitorius HOM05D002417 ORTHO05D002589 2.4e-72 276.9 310 49.4
Pp3c12_6120 Physcomitrium patens HOM05D006040 ORTHO05D007134 7.4e-66 255.4 551 32.3
FAN01G0445 Fragaria x ananassa HOM05D006040 ORTHO05D007134 1.5e-63 247.7 407 37.6
Pp3c13_14780 Physcomitrium patens HOM05D006040 ORTHO05D007134 5.9e-63 245.7 435 36.8
Glyma.14G187200 Glycine max HOM05D006040 ORTHO05D007134 1.3e-62 244.6 349 41.3
Duzib068G0842 Durio zibethinus HOM05D006040 ORTHO05D007134 1.7e-62 244.2 247 53.0
Pp3c20_10180 Physcomitrium patens HOM05D006040 ORTHO05D007134 2.5e-61 240.4 405 35.1
Haze_00002 Corylus avellana HOM05D006040 ORTHO05D007134 1.2e-60 238.0 323 43.0
Pp3c25_2290 Physcomitrium patens HOM05D006040 ORTHO05D007134 1.8e-59 234.2 420 35.2
vmacro10175 Vaccinium macrocarpon HOM05D006040 ORTHO05D007134 1.6e-57 227.6 246 50.8
Glyma.04G225400 Glycine max HOM05D006040 ORTHO05D007134 2.4e-56 223.8 313 42.5
MBI12_g33183_MAGBIO Magnolia biondii HOM05D006040 ORTHO05D007134 1.2e-55 221.5 324 39.2
Mapoly0044s0025 Marchantia polymorpha HOM05D006040 ORTHO05D007134 5.9e-55 219.2 492 31.9
Mapoly0088s0074 Marchantia polymorpha HOM05D006040 ORTHO05D007134 6.7e-51 205.7 549 29.9
Gohir.D08G118000 Gossypium hirsutum HOM05D006040 ORTHO05D007134 7.9e-44 182.2 369 35.5
VMungo1309G2872 Vigna mungo HOM05D006040 ORTHO05D007134 5.2e-43 179.5 318 39.3
CBR_g3746 Chara braunii HOM05D000019 ORTHO05D000002 4.4e-42 176.4 154 55.8
MD01G1231800 Malus domestica HOM05D006040 ORTHO05D007134 7.4e-42 175.6 147 57.8
CBR_g29958 Chara braunii HOM05D006040 ORTHO05D007134 1.2e-39 168.3 151 53.6
Pp3c23_1100 Physcomitrium patens HOM05D006040 ORTHO05D007134 4.2e-37 159.8 195 46.7
Lalb_Chr14g0364691 Lupinus albus HOM05D006040 ORTHO05D007134 8.0e-36 155.6 230 40.0
SEGI_00936 Sequoiadendron giganteum HOM05D006040 ORTHO05D007134 1.4e-32 144.8 135 54.1
SEGI_39404 Sequoiadendron giganteum HOM05D006040 ORTHO05D007134 3.5e-31 140.2 142 50.7
FvH4_7g33700 Fragaria vesca HOM05D006040 ORTHO05D007134 3.6e-28 130.2 266 33.5
SMO347G0626 Selaginella moellendorffii HOM05D006040 ORTHO05D007134 2.3e-27 127.5 166 44.6
SEGI_38707 Sequoiadendron giganteum HOM05D006040 ORTHO05D007134 8.0e-20 102.4 124 41.9
Oeu063747.1 Olea europaea HOM05D006040 ORTHO05D007134 4.0e-19 100.1 104 49.0
MD01G1231900 Malus domestica HOM05D006040 ORTHO05D007134 2.0e-15 87.8 116 49.1
Cre05.g240500 Chlamydomonas reinhardtii HOM05D006040 ORTHO05D007134 1.5e-10 71.6 71 52.1
Oeu063748.2 Olea europaea HOM05D003307 ORTHO05D003798 2.4e-08 64.3 60 46.7
Haze_17391 Corylus avellana HOM05D001765 ORTHO05D005876 5.4e-08 63.2 160 31.9
CDE04G3558 Ceratophyllum demersum HOM05D006040 ORTHO05D007134 1.3e-06 58.5 57 49.1


User provided reference genes

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