Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT5G24500 Arabidopsis thaliana HOM05D003457 ORTHO05D009249 1.0e-169 600.1 335 100.0
AL6G36090 Arabidopsis lyrata HOM05D003457 ORTHO05D009249 4.0e-150 535.0 335 88.4
Carub.0006s2232 Capsella rubella HOM05D003457 ORTHO05D009249 1.8e-134 483.0 342 84.2
CARHR188920 Cardamine hirsuta HOM05D003457 ORTHO05D009249 7.4e-120 434.5 345 78.6
Sp2g22840 Schrenkiella parvula HOM05D003457 ORTHO05D009249 4.1e-118 428.7 342 74.9
Thhalv10005511m.g Eutrema salsugineum HOM05D003457 ORTHO05D009249 1.3e-108 397.1 343 73.8
Aa31LG11G3740 Aethionema arabicum HOM05D003457 ORTHO05D009249 1.2e-93 347.4 335 63.9
BcaB07g29912 Brassica carinata HOM05D003457 ORTHO05D009249 3.3e-75 286.2 344 57.3
BcaC03g17967 Brassica carinata HOM05D003457 ORTHO05D009249 8.9e-73 278.1 337 55.5
THA.LOC104798986 Tarenaya hassleriana HOM05D003457 ORTHO05D009249 1.2e-69 267.7 305 53.4
C02p60250 Brassica napus HOM05D003457 ORTHO05D009249 1.2e-66 257.7 307 56.7
A02p40300 Brassica napus HOM05D003457 ORTHO05D009249 3.4e-64 249.6 307 55.4
BolC2t12082H Brassica oleracea HOM05D003457 ORTHO05D009249 2.2e-63 246.9 307 55.4
BraA02t08999Z Brassica rapa HOM05D003457 ORTHO05D009249 3.8e-63 246.1 307 55.4
Cpa.g.sc3.155 Carica papaya HOM05D003457 ORTHO05D009249 5.6e-35 152.5 260 41.2
Thecc.03G208400 Theobroma cacao HOM05D003457 ORTHO05D009249 3.0e-28 130.2 259 39.8
Duzib084G1096 Durio zibethinus HOM05D003457 ORTHO05D009249 4.3e-27 126.3 254 39.0
CSS0022238 Camellia sinensis var. sinensis HOM05D003457 ORTHO05D009249 7.4e-27 125.6 346 34.4
CSS0029860 Camellia sinensis var. sinensis HOM05D003457 ORTHO05D009249 7.4e-27 125.6 346 34.4
Gohir.D04G000050 Gossypium hirsutum HOM05D003457 ORTHO05D009249 2.8e-26 123.6 256 36.7
Duzib068G0780 Durio zibethinus HOM05D003457 ORTHO05D009249 1.8e-25 120.9 340 32.9
Gohir.D04G000080 Gossypium hirsutum HOM05D003457 ORTHO05D009249 3.1e-25 120.2 255 35.3
Gorai.012G000700 Gossypium raimondii HOM05D003457 ORTHO05D009249 3.1e-25 120.2 255 35.3
Dinv29212 Davidia involucrata HOM05D003457 ORTHO05D009249 1.2e-24 118.2 260 37.3
FAN10G0211 Fragaria x ananassa HOM05D003457 ORTHO05D009746 4.5e-24 116.3 288 34.0
ClCG00G005020 Citrullus lanatus HOM05D003457 ORTHO05D009249 5.9e-24 115.9 254 36.6
ClCG01G004590 Citrullus lanatus HOM05D003457 ORTHO05D009249 5.9e-24 115.9 254 36.6
ClCG01G004630 Citrullus lanatus HOM05D003457 ORTHO05D009249 5.9e-24 115.9 254 36.6
FAN03G1743 Fragaria x ananassa HOM05D003457 ORTHO05D009746 1.7e-23 114.4 288 33.3
Dinv35380 Davidia involucrata HOM05D003457 ORTHO05D009746 2.9e-23 113.6 266 36.5
Duzib205G0475 Durio zibethinus HOM05D003457 ORTHO05D009249 8.5e-23 112.1 249 34.9
FvH4_7g32890 Fragaria vesca HOM05D003457 ORTHO05D009249 8.5e-23 112.1 288 33.0
Cfa016162 Carpinus fangiana HOM05D003457 ORTHO05D009249 2.5e-22 110.5 251 36.3
Ciclev10020653m.g Citrus clementina HOM05D003457 ORTHO05D009249 2.5e-22 110.5 236 35.6
MD07G1298800 Malus domestica HOM05D003457 ORTHO05D009249 2.5e-22 110.5 268 35.4
FAN01G1561 Fragaria x ananassa HOM05D003457 ORTHO05D009746 3.2e-22 110.2 288 33.3
Rhsim03G0215300 Rhododendron simsii HOM05D003457 ORTHO05D009249 1.6e-21 107.8 246 37.4
TWI23G0841 Tripterygium wilfordii HOM05D003457 ORTHO05D009249 1.6e-21 107.8 244 35.2
Manes.01G043100 Manihot esculenta HOM05D003457 ORTHO05D009249 3.6e-21 106.7 256 35.9
Actinidia08697 Actinidia chinensis HOM05D003457 ORTHO05D009249 4.6e-21 106.3 249 36.5
CiPaw.06G041400 Carya illinoinensis HOM05D003457 ORTHO05D009249 6.1e-21 105.9 248 34.3
Actinidia34268 Actinidia chinensis HOM05D003457 ORTHO05D009249 2.3e-20 104.0 245 34.7
MELO3C033815.2 Cucumis melo HOM05D003457 ORTHO05D009249 2.3e-20 104.0 254 35.4
MD01G1228100 Malus domestica HOM05D003457 ORTHO05D009249 3.0e-20 103.6 256 36.3
SalBow2G2220 Salvia bowleyana HOM05D003457 ORTHO05D009249 5.1e-20 102.8 236 36.0
CsaV3_5G004840 Cucumis sativus L. HOM05D003457 ORTHO05D009249 1.1e-19 101.7 254 35.4
MBI12_g09299_MAGBIO Magnolia biondii HOM05D003457 ORTHO05D009249 1.5e-19 101.3 257 32.7
MSTRG.31 Avicennia marina HOM05D003457 ORTHO05D009249 7.4e-19 99.0 345 31.3
RcHm_v2.0_Chr1g0382841 Rosa chinensis HOM05D003457 ORTHO05D009249 9.7e-19 98.6 230 34.8
TAR636G2436 Trochodendron aralioides HOM05D003457 ORTHO05D009249 1.3e-18 98.2 263 32.7
Nn1g00443 Nelumbo nucifera HOM05D003457 ORTHO05D009249 2.2e-18 97.4 264 34.1
FAN10G3191 Fragaria x ananassa HOM05D003457 ORTHO05D009746 1.1e-17 95.1 244 34.8
TAR629G1045 Trochodendron aralioides HOM05D003457 ORTHO05D009249 1.1e-17 95.1 277 31.8
CAN.G303.15 Capsicum annuum HOM05D003457 ORTHO05D009249 2.4e-17 94.0 240 32.5
Aqoxy5G04336 Aquilegia oxysepala HOM05D003457 ORTHO05D009249 4.1e-17 93.2 238 34.0
Oeu037975.2 Olea europaea HOM05D003457 ORTHO05D009249 5.3e-17 92.8 230 35.2
Peaxi162Scf00300g00833 Petunia axillaris HOM05D003457 ORTHO05D009249 6.9e-17 92.4 232 34.1
Prupe.2G318600 Prunus persica HOM05D003457 ORTHO05D009249 6.9e-17 92.4 262 34.7
Sopen03g022030 Solanum pennellii HOM05D003457 ORTHO05D009249 1.5e-16 91.3 262 35.5
TPR.G33664 Trifolium pratense HOM05D003457 ORTHO05D009249 2.6e-16 90.5 235 33.6
Lsat_1_v5_gn_8_4361 Lactuca sativa HOM05D003457 ORTHO05D009249 3.4e-16 90.1 233 35.6
Lsat_1_v5_gn_9_3980 Lactuca sativa HOM05D003457 ORTHO05D009249 4.5e-16 89.7 233 36.5
PGR142G1344 Punica granatum HOM05D003457 ORTHO05D009249 4.5e-16 89.7 242 37.2
Solyc03g081310.3 Solanum lycopersicum HOM05D003457 ORTHO05D009249 4.5e-16 89.7 263 35.4
PGSC0003DMG400000588 Solanum tuberosum HOM05D003457 ORTHO05D009249 4.5e-16 89.7 260 32.3
Potri.015G005100 Populus trichocarpa HOM05D003457 ORTHO05D009249 5.9e-16 89.4 348 28.7
AUR62035619 Chenopodium quinoa HOM05D003457 ORTHO05D009249 7.7e-16 89.0 239 35.6
Lsat_1_v5_gn_5_51360 Lactuca sativa HOM05D003457 ORTHO05D009249 7.7e-16 89.0 233 36.5
Nitab4.5_0005040g0050 Nicotiana tabacum HOM05D003457 ORTHO05D009249 7.7e-16 89.0 253 34.8
Medtr3g092670 Medicago truncatula HOM05D003457 ORTHO05D009249 1.0e-15 88.6 242 32.6
Potri.012G021300 Populus trichocarpa HOM05D003457 ORTHO05D009249 1.0e-15 88.6 168 39.3
Glyma.04G228600 Glycine max HOM05D003457 ORTHO05D009249 1.3e-15 88.2 228 36.0
Sabra15G0003600 Salix brachista HOM05D003457 ORTHO05D009249 1.3e-15 88.2 262 33.2
Eucgr.K00429 Eucalyptus grandis HOM05D003457 ORTHO05D009249 2.2e-15 87.4 264 30.3
Ca_16777_v3 Cicer arietinum L. HOM05D003457 ORTHO05D009249 2.9e-15 87.0 233 34.8
Migut.F00990 Erythranthe guttata HOM05D003457 ORTHO05D009249 3.8e-15 86.7 334 29.0
ATR1155G002 Amborella trichopoda HOM05D003457 ORTHO05D009249 5.0e-15 86.3 241 31.5
Ah.07g204690 Amaranthus hybridus HOM05D003457 ORTHO05D009249 6.5e-15 85.9 237 35.0
CDE01G0392 Ceratophyllum demersum HOM05D003457 ORTHO05D009249 8.5e-15 85.5 253 35.2
DCAR_020371 Daucus carota HOM05D003457 ORTHO05D009249 8.5e-15 85.5 247 34.0
Sabra12G0012300 Salix brachista HOM05D003457 ORTHO05D009249 1.1e-14 85.1 166 39.8
unitig_90.g27506 Utricularia gibba HOM05D003457 ORTHO05D009249 1.4e-14 84.7 174 39.1
AUR62006007 Chenopodium quinoa HOM05D003457 ORTHO05D009746 1.9e-14 84.3 239 36.8
EL10Ac3g05182 Beta vulgaris HOM05D003457 ORTHO05D009249 2.5e-14 84.0 229 34.5
Lsat_1_v5_gn_1_120581 Lactuca sativa HOM05D003457 ORTHO05D009249 2.5e-14 84.0 238 34.5
Nitab4.5_0000319g0070 Nicotiana tabacum HOM05D003457 ORTHO05D009249 5.5e-14 82.8 254 31.9
Lsat_1_v5_gn_7_20360 Lactuca sativa HOM05D003457 ORTHO05D009249 1.2e-13 81.6 232 33.2
Cc02_g00840 Coffea canephora HOM05D003457 ORTHO05D009249 1.6e-13 81.3 238 31.5
SGA_v2.0_scaffold141G35555 Striga asiatica HOM05D003457 ORTHO05D009249 2.1e-13 80.9 338 28.1
CiPaw.02G048700 Carya illinoinensis HOM05D003457 ORTHO05D009249 2.7e-13 80.5 121 41.3
Psat5g072040 Pisum sativum HOM05D003457 ORTHO05D009249 2.7e-13 80.5 242 33.1
COL.COLO4_14368 Corchorus olitorius HOM05D003457 ORTHO05D009249 3.6e-13 80.1 108 44.4
Glyma.06G136400 Glycine max HOM05D003457 ORTHO05D009249 4.7e-13 79.7 228 33.3
CDE02G1140 Ceratophyllum demersum HOM05D003457 ORTHO05D009249 7.9e-13 79.0 247 31.6
Atru.chr12.2426 Acer truncatum HOM05D003457 ORTHO05D009249 1.8e-12 77.8 109 45.0
VMungo1309G3135 Vigna mungo HOM05D003457 ORTHO05D009249 1.8e-12 77.8 242 32.6
Phvul.009G045300 Phaseolus vulgaris HOM05D003457 ORTHO05D009249 5.1e-12 76.3 228 31.6
Lj1g0002342 Lotus japonicus HOM05D003457 ORTHO05D009249 1.1e-11 75.1 244 33.2
Sabra05G0139600 Salix brachista HOM05D003457 ORTHO05D009249 1.5e-11 74.7 164 36.0
PSO782G2427 Papaver somniferum HOM05D003457 ORTHO05D009249 2.0e-11 74.3 261 29.1
HanXRQChr08g0225921 Helianthus annuus HOM05D003457 ORTHO05D009249 9.1e-09 65.5 298 27.5
Lalb_Chr08g0239631 Lupinus albus HOM05D003457 ORTHO05D009249 1.2e-08 65.1 236 30.9
QL09p007211 Quercus lobata HOM05D003457 ORTHO05D009249 2.6e-08 63.9 241 29.0
ECA233G0397 Erigeron canadensis HOM05D003457 ORTHO05D009249 1.7e-07 61.2 48 60.4
HPP92_015415 Vanilla planifolia HOM05D003457 ORTHO05D009249 8.5e-07 58.9 230 31.3
Sc13g0010260 Simmondsia chinensis HOM05D003457 ORTHO05D009249 2.5e-06 57.4 238 29.8


User provided reference genes

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