Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT5G24460 Arabidopsis thaliana HOM05D005840 ORTHO05D007144 3.9e-168 594.7 301 100.0
AL6G36040 Arabidopsis lyrata HOM05D005840 ORTHO05D007144 2.3e-152 542.3 302 91.4
Carub.0006s2229 Capsella rubella HOM05D005840 ORTHO05D007144 8.4e-147 523.9 299 88.3
CARHR188950 Cardamine hirsuta HOM05D005840 ORTHO05D007144 1.9e-146 522.7 299 86.3
Thhalv10005309m.g Eutrema salsugineum HOM05D005840 ORTHO05D007144 7.8e-145 517.3 300 87.3
Sp2g22870 Schrenkiella parvula HOM05D005840 ORTHO05D007144 2.3e-144 515.8 300 87.3
A09p06480 Brassica napus HOM05D005840 ORTHO05D007144 1.4e-138 496.5 302 83.1
BraA09t36291Z Brassica rapa HOM05D005840 ORTHO05D007144 4.2e-138 495.0 302 83.1
BcaC04g23543 Brassica carinata HOM05D005840 ORTHO05D007144 1.3e-134 483.4 302 82.8
C09p07230 Brassica napus HOM05D005840 ORTHO05D007144 1.3e-134 483.4 302 82.8
BolC9t53635H Brassica oleracea HOM05D005840 ORTHO05D007144 1.6e-134 483.0 301 82.7
Aa31LG11G3710 Aethionema arabicum HOM05D005840 ORTHO05D007144 2.1e-134 482.6 300 81.0
BcaNung01236 Brassica carinata HOM05D005840 ORTHO05D007144 3.7e-134 481.9 303 82.2
BraA06t26455Z Brassica rapa HOM05D005840 ORTHO05D007144 2.6e-132 475.7 311 77.2
A06p35290 Brassica napus HOM05D005840 ORTHO05D007144 7.1e-130 467.6 301 78.1
THA.LOC104798983 Tarenaya hassleriana HOM05D005840 ORTHO05D007144 1.5e-108 396.7 302 69.5
BcaB04g19821 Brassica carinata HOM05D005840 ORTHO05D007144 8.8e-96 354.4 229 79.5
C07p43220 Brassica napus HOM05D005840 ORTHO05D007144 8.8e-96 354.4 229 79.5
Thecc.03G209000 Theobroma cacao HOM05D005840 ORTHO05D007144 8.8e-88 327.8 275 62.2
Cpa.g.sc3.150 Carica papaya HOM05D005840 ORTHO05D007144 3.3e-87 325.9 306 57.5
TAR375G0732 Trochodendron aralioides HOM05D005840 ORTHO05D007144 6.3e-86 321.6 304 57.9
Duzib084G0063 Durio zibethinus HOM05D005840 ORTHO05D007144 1.4e-85 320.5 265 61.9
TWI14G0550 Tripterygium wilfordii HOM05D005840 ORTHO05D007144 1.4e-85 320.5 275 60.7
QL09p007163 Quercus lobata HOM05D005840 ORTHO05D007144 4.1e-85 318.9 284 59.2
PGR042G3207 Punica granatum HOM05D005840 ORTHO05D007144 1.3e-83 313.9 300 58.3
Nn3g18788 Nelumbo nucifera HOM05D005840 ORTHO05D007144 8.5e-83 311.2 277 59.2
CANSAT21G1965 Cannabis sativa HOM05D005840 ORTHO05D007144 1.5e-82 310.5 298 55.7
Gorai.004G125300 Gossypium raimondii HOM05D005840 ORTHO05D007144 1.9e-82 310.1 294 57.5
Gohir.A08G104700 Gossypium hirsutum HOM05D005840 ORTHO05D007144 5.5e-82 308.5 294 57.5
Manes.01G043400 Manihot esculenta HOM05D005840 ORTHO05D007144 5.5e-82 308.5 309 56.6
PSO063G5360 Papaver somniferum HOM05D005840 ORTHO05D007144 2.1e-81 306.6 304 55.9
RcHm_v2.0_Chr1g0382901 Rosa chinensis HOM05D005840 ORTHO05D007144 2.7e-81 306.2 296 57.8
PGSC0003DMG400000562 Solanum tuberosum HOM05D005840 ORTHO05D007144 3.6e-81 305.8 276 57.2
CSS0020402 Camellia sinensis var. sinensis HOM05D005840 ORTHO05D007144 4.7e-81 305.4 274 59.5
Solyc03g081220.1 Solanum lycopersicum HOM05D005840 ORTHO05D007144 2.3e-80 303.1 301 52.8
FvH4_7g32940 Fragaria vesca HOM05D005840 ORTHO05D007144 4.0e-80 302.4 299 56.2
Atru.chr12.2435 Acer truncatum HOM05D005840 ORTHO05D007144 2.0e-79 300.1 299 57.5
Sopen03g021950 Solanum pennellii HOM05D005840 ORTHO05D007144 2.0e-79 300.1 276 56.2
Dinv35383 Davidia involucrata HOM05D005840 ORTHO05D007144 4.4e-79 298.9 288 55.2
Potri.015G002500 Populus trichocarpa HOM05D005840 ORTHO05D007144 7.5e-79 298.1 282 56.7
TPR.G33360 Trifolium pratense HOM05D005840 ORTHO05D007144 9.8e-79 297.7 312 55.4
Medtr3g092810 Medicago truncatula HOM05D005840 ORTHO05D007144 1.3e-78 297.4 311 56.6
CAN.G303.23 Capsicum annuum HOM05D005840 ORTHO05D007144 1.7e-78 297.0 275 56.4
Lalb_Chr08g0239571 Lupinus albus HOM05D005840 ORTHO05D007144 1.7e-78 297.0 310 54.5
Psat5g071840 Pisum sativum HOM05D005840 ORTHO05D007144 2.2e-78 296.6 285 56.1
Ciclev10021557m.g Citrus clementina HOM05D005840 ORTHO05D007144 3.7e-78 295.8 295 57.3
COL.COLO4_14373 Corchorus olitorius HOM05D005840 ORTHO05D007144 4.8e-78 295.4 215 67.4
Oeu023690.1 Olea europaea HOM05D005840 ORTHO05D007144 4.8e-78 295.4 284 58.1
VMungo1309G2416 Vigna mungo HOM05D005840 ORTHO05D007144 4.8e-78 295.4 288 57.3
Gohir.D11G016500 Gossypium hirsutum HOM05D005840 ORTHO05D007144 6.3e-78 295.0 275 57.1
FAN10G0422 Fragaria x ananassa HOM05D005840 ORTHO05D007144 8.3e-78 294.7 298 55.4
Gorai.007G017300 Gossypium raimondii HOM05D005840 ORTHO05D007144 1.1e-77 294.3 299 54.5
FAN10G3655 Fragaria x ananassa HOM05D005840 ORTHO05D007144 1.4e-77 293.9 298 55.0
DCAR_008987 Daucus carota HOM05D005840 ORTHO05D007144 2.4e-77 293.1 285 55.4
Nitab4.5_0000319g0020 Nicotiana tabacum HOM05D005840 ORTHO05D007144 4.1e-77 292.4 275 56.7
Phvul.009G044800 Phaseolus vulgaris HOM05D005840 ORTHO05D007144 4.1e-77 292.4 292 55.5
Lalb_Chr23g0271941 Lupinus albus HOM05D005840 ORTHO05D007144 5.4e-77 292.0 282 58.2
Sabra15G0001600 Salix brachista HOM05D005840 ORTHO05D007144 7.0e-77 291.6 269 58.0
MD07G1299300 Malus domestica HOM05D005840 ORTHO05D007144 9.1e-77 291.2 296 54.7
CiPaw.06G041000 Carya illinoinensis HOM05D005840 ORTHO05D007144 1.2e-76 290.8 217 65.4
Cc02_g00800 Coffea canephora HOM05D005840 ORTHO05D007144 1.2e-76 290.8 297 54.2
Sc19g0000580 Simmondsia chinensis HOM05D005840 ORTHO05D007144 1.2e-76 290.8 299 52.2
Ah.13g070770 Amaranthus hybridus HOM05D005840 ORTHO05D007144 1.6e-76 290.4 306 52.0
FAN03G2485 Fragaria x ananassa HOM05D005840 ORTHO05D007144 2.0e-76 290.0 295 55.9
Ca_16781_v3 Cicer arietinum L. HOM05D005840 ORTHO05D007144 3.5e-76 289.3 279 56.3
Nitab4.5_0010809g0010 Nicotiana tabacum HOM05D005840 ORTHO05D007144 3.5e-76 289.3 275 56.0
MELO3C005919.2 Cucumis melo HOM05D005840 ORTHO05D007144 7.7e-76 288.1 271 54.6
Gohir.A11G016700 Gossypium hirsutum HOM05D005840 ORTHO05D007144 7.7e-76 288.1 291 54.3
BcaB04g19819 Brassica carinata HOM05D005840 ORTHO05D007144 1.3e-75 287.3 169 83.4
AUR62028079 Chenopodium quinoa HOM05D005840 ORTHO05D007144 1.3e-75 287.3 306 52.0
Prupe.2G319100 Prunus persica HOM05D005840 ORTHO05D007144 2.3e-75 286.6 306 54.6
Migut.F00150 Erythranthe guttata HOM05D005840 ORTHO05D007144 2.9e-75 286.2 291 55.0
Glyma.06G136800 Glycine max HOM05D005840 ORTHO05D007144 8.6e-75 284.6 291 54.6
Lj1g0001826 Lotus japonicus HOM05D005840 ORTHO05D007144 1.1e-74 284.3 308 51.9
FAN01G0139 Fragaria x ananassa HOM05D005840 ORTHO05D007144 3.3e-74 282.7 297 54.2
MSTRG.8611 Avicennia marina HOM05D005840 ORTHO05D007144 5.5e-74 282.0 286 53.8
ClCG01G000060 Citrullus lanatus HOM05D005840 ORTHO05D007144 5.5e-74 282.0 239 58.2
MD01G1228500 Malus domestica HOM05D005840 ORTHO05D007144 7.2e-74 281.6 265 57.0
PSO782G2283 Papaver somniferum HOM05D005840 ORTHO05D007144 7.2e-74 281.6 210 65.7
Sed0003210 Sechium edule HOM05D005840 ORTHO05D007144 1.2e-73 280.8 273 55.7
Haze_00300 Corylus avellana HOM05D005840 ORTHO05D007144 6.1e-73 278.5 210 63.8
CsaV3_5G000100 Cucumis sativus L. HOM05D005840 ORTHO05D007144 2.3e-72 276.6 266 54.9
Glyma.04G228100 Glycine max HOM05D005840 ORTHO05D007144 3.0e-72 276.2 297 53.9
Peaxi162Scf00912g10012 Petunia axillaris HOM05D005840 ORTHO05D007144 3.0e-72 276.2 214 63.6
SalBow6G2506 Salvia bowleyana HOM05D005840 ORTHO05D007144 5.2e-72 275.4 305 52.1
AUR62005991 Chenopodium quinoa HOM05D005840 ORTHO05D007144 8.9e-72 274.6 306 51.3
MSTRG.26975 Avicennia marina HOM05D005840 ORTHO05D007144 4.4e-71 272.3 278 52.5
Actinidia34271 Actinidia chinensis HOM05D005840 ORTHO05D007144 7.5e-71 271.6 207 63.3
Lj3P895T18 Lonicera japonica HOM05D005840 ORTHO05D007144 7.5e-71 271.6 215 62.3
Lsat_1_v5_gn_9_49980 Lactuca sativa HOM05D005840 ORTHO05D007144 9.8e-71 271.2 279 52.7
HanXRQChr10g0305331 Helianthus annuus HOM05D005840 ORTHO05D007144 2.2e-70 270.0 273 55.3
Hma1.2p1_0094F.1_g047400 Hydrangea macrophylla HOM05D005840 ORTHO05D007144 8.3e-70 268.1 214 64.0
CDE04G1956 Ceratophyllum demersum HOM05D005840 ORTHO05D007144 1.4e-69 267.3 210 62.4
MBI12_g45814_MAGBIO Magnolia biondii HOM05D005840 ORTHO05D007144 1.4e-69 267.3 281 51.6
unitig_37.g11995 Utricularia gibba HOM05D005840 ORTHO05D007144 3.1e-69 266.2 281 52.3
Oeu055391.1 Olea europaea HOM05D005840 ORTHO05D007144 7.0e-69 265.0 219 60.7
Rhsim03G0215700 Rhododendron simsii HOM05D005840 ORTHO05D007144 9.2e-69 264.6 217 59.0
CDE12G0905 Ceratophyllum demersum HOM05D005840 ORTHO05D007144 1.6e-68 263.8 211 61.1
Lsat_1_v5_gn_2_135020 Lactuca sativa HOM05D005840 ORTHO05D007144 5.9e-68 261.9 272 52.9
ECA232G4892 Erigeron canadensis HOM05D005840 ORTHO05D007144 7.8e-68 261.5 217 58.5
SGA_v2.0_scaffold18G08468 Striga asiatica HOM05D005840 ORTHO05D007144 1.3e-67 260.8 283 53.0
EL10Ac3g05171 Beta vulgaris HOM05D005840 ORTHO05D007144 1.9e-66 256.9 218 59.6
vmacro22785 Vaccinium macrocarpon HOM05D005840 ORTHO05D007144 8.0e-65 251.5 327 45.6
Aqoxy6G02459 Aquilegia oxysepala HOM05D005840 ORTHO05D007144 3.4e-63 246.1 211 59.2
Aqoxy6G02489 Aquilegia oxysepala HOM05D005840 ORTHO05D007144 3.4e-63 246.1 211 59.2
Sed0025728 Sechium edule HOM05D005840 ORTHO05D007144 1.9e-61 240.4 212 54.7
vmacro06444 Vaccinium macrocarpon HOM05D005840 ORTHO05D007144 6.0e-60 235.3 270 48.1
Actinidia08699 Actinidia chinensis HOM05D005840 ORTHO05D007144 1.6e-57 227.3 212 55.7
unitig_92.g28240 Utricularia gibba HOM05D005840 ORTHO05D007144 3.6e-57 226.1 205 58.0
unitig_0.g2444 Utricularia gibba HOM05D005840 ORTHO05D007144 8.0e-57 224.9 205 54.1
Cc11_g13290 Coffea canephora HOM05D005840 ORTHO05D007144 1.4e-56 224.2 233 55.4
BcaNung02020 Brassica carinata HOM05D005840 ORTHO05D007144 4.0e-56 222.6 241 52.7
HPP92_022381 Vanilla planifolia HOM05D005840 ORTHO05D007144 1.2e-55 221.1 221 51.6
SHI02291 Sapria himalayana HOM05D005840 ORTHO05D007144 1.6e-52 210.7 213 52.1
SEGI_38224 Sequoiadendron giganteum HOM05D005840 ORTHO05D007144 2.7e-52 209.9 209 46.9
ATR0661G235 Amborella trichopoda HOM05D005840 ORTHO05D007144 1.7e-51 207.2 208 53.4
BcaB04g19822 Brassica carinata HOM05D005840 ORTHO05D007144 4.7e-49 199.1 121 79.3
SMO140G0013 Selaginella moellendorffii HOM05D005840 ORTHO05D007144 2.5e-42 176.8 215 44.2
Mapoly0031s0111 Marchantia polymorpha HOM05D005840 ORTHO05D007144 5.6e-42 175.6 216 43.5
Pp3c3_29470 Physcomitrium patens HOM05D005840 ORTHO05D007144 2.1e-41 173.7 236 41.1
Zm00001eb272540 Zea mays HOM05D005840 ORTHO05D007144 1.2e-39 167.9 212 47.2
Os06g0712200 Oryza sativa ssp. japonica HOM05D005840 ORTHO05D007144 1.5e-39 167.5 223 46.6
COL.COLO4_35601 Corchorus olitorius HOM05D005840 ORTHO05D007144 2.9e-38 163.3 226 41.2
COL.COLO4_12096 Corchorus olitorius HOM05D005840 ORTHO05D007144 6.0e-36 155.6 181 47.0
CBR_g20004 Chara braunii HOM05D005840 ORTHO05D007144 5.1e-35 152.5 185 45.4
Gohir.D08G116401 Gossypium hirsutum HOM05D005840 ORTHO05D007144 8.7e-27 125.2 122 54.1
Duzib114G0266 Durio zibethinus HOM05D005840 ORTHO05D007144 9.3e-21 105.1 140 42.1
SalBow4G0698 Salvia bowleyana HOM05D001856 ORTHO05D007144 1.9e-18 97.4 67 64.2
CAN.G2.4 Capsicum annuum HOM05D005840 ORTHO05D007144 4.3e-18 96.3 78 59.0
Cre01.g012300 Chlamydomonas reinhardtii HOM05D005840 ORTHO05D007144 1.4e-16 91.3 184 36.4
SalBow6G2140 Salvia bowleyana HOM05D005840 ORTHO05D007144 2.4e-16 90.5 61 63.9
MCO06G087 Micromonas commoda HOM05D005840 ORTHO05D007144 1.2e-15 88.2 169 36.1
Potri.010G149800 Populus trichocarpa HOM05D005840 ORTHO05D007144 1.9e-13 80.9 86 46.5
COL.COLO4_35602 Corchorus olitorius HOM05D005840 ORTHO05D007144 1.0e-11 75.1 87 44.8


User provided reference genes

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