Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT5G24352 Arabidopsis thaliana HOM05D000978 ORTHO05D000813 1.3e-32 142.5 72 100.0
AT1G64625 Arabidopsis thaliana HOM05D000978 ORTHO05D000813 2.1e-27 125.2 85 78.8
AL2G10130 Arabidopsis lyrata HOM05D000978 ORTHO05D000813 1.9e-25 118.6 85 75.3
CARHR046290 Cardamine hirsuta HOM05D000978 ORTHO05D000813 1.5e-22 109.0 83 69.9
Thhalv10023398m.g Eutrema salsugineum HOM05D000978 ORTHO05D000813 3.4e-22 107.8 73 76.7
BcaC04g22595 Brassica carinata HOM05D000978 ORTHO05D000813 4.2e-20 100.9 83 65.1
C09p17490 Brassica napus HOM05D000978 ORTHO05D000813 4.2e-20 100.9 83 66.3
BolC9t54647H Brassica oleracea HOM05D000978 ORTHO05D000813 4.2e-20 100.9 83 65.1
Carub.0002s0011 Capsella rubella HOM05D000978 ORTHO05D000813 4.2e-20 100.9 83 65.1
A09p14450 Brassica napus HOM05D000978 ORTHO05D000813 1.3e-18 95.9 83 62.7
BcaB07g31484 Brassica carinata HOM05D000978 ORTHO05D000813 1.8e-18 95.5 82 62.2
A09p14500 Brassica napus HOM05D000978 ORTHO05D000813 2.3e-18 95.1 83 62.7
BraA09t37098Z Brassica rapa HOM05D000978 ORTHO05D000813 2.3e-18 95.1 83 62.7
BcaC04g22602 Brassica carinata HOM05D000978 ORTHO05D000813 8.7e-18 93.2 83 62.7
C09p17410 Brassica napus HOM05D000978 ORTHO05D000813 8.7e-18 93.2 83 62.7
Sp2g00090 Schrenkiella parvula HOM05D000978 ORTHO05D000813 1.1e-17 92.8 83 60.2
BcaB07g31492 Brassica carinata HOM05D000978 ORTHO05D000813 1.9e-17 92.0 82 59.8
BolC9t54641H Brassica oleracea HOM05D000978 ORTHO05D000813 5.7e-17 90.5 88 59.1
THA.LOC104810796 Tarenaya hassleriana HOM05D000978 ORTHO05D000813 4.8e-16 87.4 79 55.7
THA.LOC104817437 Tarenaya hassleriana HOM05D000978 ORTHO05D000813 4.8e-16 87.4 79 55.7
Aa31LG2G1640 Aethionema arabicum HOM05D000978 ORTHO05D000813 6.3e-16 87.0 81 59.3
THA.LOC104809311 Tarenaya hassleriana HOM05D000978 ORTHO05D000813 5.0e-13 77.4 77 49.4
Ciclev10018834m.g Citrus clementina HOM05D000978 ORTHO05D000813 5.5e-12 73.9 96 42.7
Atru.chr9.1913 Acer truncatum HOM05D000978 ORTHO05D000813 9.4e-12 73.2 98 43.9
Potri.003G144900 Populus trichocarpa HOM05D000978 ORTHO05D000813 8.8e-10 66.6 94 43.6
Sabra03G0105400 Salix brachista HOM05D000978 ORTHO05D000813 8.8e-10 66.6 94 41.5
SHI06931 Sapria himalayana HOM05D000978 ORTHO05D000813 1.1e-09 66.2 90 44.4
SHI10413 Sapria himalayana HOM05D000978 ORTHO05D000813 1.5e-09 65.9 84 45.2
Potri.001G086000 Populus trichocarpa HOM05D000978 ORTHO05D000813 2.0e-09 65.5 98 42.9
TWI15G0937 Tripterygium wilfordii HOM05D000978 ORTHO05D000813 2.5e-09 65.1 97 38.1
MELO3C013782.2 Cucumis melo HOM05D000978 ORTHO05D000813 4.3e-09 64.3 89 40.4
CsaV3_3G000950 Cucumis sativus L. HOM05D000978 ORTHO05D000813 4.3e-09 64.3 91 40.7
Sabra01G0062300 Salix brachista HOM05D000978 ORTHO05D000813 5.7e-09 63.9 99 40.4
CiPaw.12G079000 Carya illinoinensis HOM05D000978 ORTHO05D000813 9.7e-09 63.2 88 40.9
Haze_09132 Corylus avellana HOM05D000978 ORTHO05D000813 9.7e-09 63.2 94 39.4
Duzib205G2029 Durio zibethinus HOM05D000978 ORTHO05D000813 9.7e-09 63.2 92 41.3
Gohir.A08G110400 Gossypium hirsutum HOM05D000978 ORTHO05D000813 1.7e-08 62.4 91 39.6
Gohir.D08G123900 Gossypium hirsutum HOM05D000978 ORTHO05D000813 1.7e-08 62.4 91 39.6
Gorai.004G130500 Gossypium raimondii HOM05D000978 ORTHO05D000813 1.7e-08 62.4 91 39.6
Thecc.03G223900 Theobroma cacao HOM05D000978 ORTHO05D000813 1.7e-08 62.4 99 39.4
CiPaw.11G114600 Carya illinoinensis HOM05D000978 ORTHO05D000813 2.8e-08 61.6 98 34.7
Dinv06547 Davidia involucrata HOM05D000978 ORTHO05D000813 3.7e-08 61.2 98 37.8
QL02p028908 Quercus lobata HOM05D000978 ORTHO05D000813 4.8e-08 60.8 98 35.7
MD05G1200100 Malus domestica HOM05D000978 ORTHO05D000813 6.3e-08 60.5 76 43.4
Cfa011948 Carpinus fangiana HOM05D000978 ORTHO05D000813 8.2e-08 60.1 90 40.0
Gohir.A08G060200 Gossypium hirsutum HOM05D000978 ORTHO05D000813 8.2e-08 60.1 87 39.1
Medtr1g077640 Medicago truncatula HOM05D000978 ORTHO05D000813 8.2e-08 60.1 80 42.5
Sed0021277 Sechium edule HOM05D000978 ORTHO05D000813 8.2e-08 60.1 88 38.6
Ca_09934_v3 Cicer arietinum L. HOM05D000978 ORTHO05D000813 1.1e-07 59.7 79 45.6
Ca_09943_v3 Cicer arietinum L. HOM05D000978 ORTHO05D000813 1.1e-07 59.7 79 45.6
Gohir.D03G086200 Gossypium hirsutum HOM05D000978 ORTHO05D000813 1.1e-07 59.7 85 38.8
Gorai.003G076000 Gossypium raimondii HOM05D000978 ORTHO05D000813 1.1e-07 59.7 85 38.8
TWI81G0797 Tripterygium wilfordii HOM05D000978 ORTHO05D000813 1.1e-07 59.7 98 36.7
Glyma.20G216700 Glycine max HOM05D000978 ORTHO05D000813 1.4e-07 59.3 91 38.5
Gohir.A02G097301 Gossypium hirsutum HOM05D000978 ORTHO05D000813 1.4e-07 59.3 85 38.8
MD06G1114400 Malus domestica HOM05D000978 ORTHO05D000813 1.4e-07 59.3 98 34.7
Manes.02G004800 Manihot esculenta HOM05D000978 ORTHO05D000813 1.4e-07 59.3 95 35.8
PGR031G0787 Punica granatum HOM05D000978 ORTHO05D000813 1.4e-07 59.3 85 36.5
TPR.G8881 Trifolium pratense HOM05D000978 ORTHO05D000813 1.4e-07 59.3 83 41.0
Dinv12203 Davidia involucrata HOM05D000978 ORTHO05D000813 2.4e-07 58.5 98 35.7
Glyma.10G173500 Glycine max HOM05D000978 ORTHO05D000813 2.4e-07 58.5 91 37.4
Lsat_1_v5_gn_6_82381 Lactuca sativa HOM05D000978 ORTHO05D000813 2.4e-07 58.5 80 40.0
Nn3g18916 Nelumbo nucifera HOM05D000978 ORTHO05D000813 2.4e-07 58.5 90 36.7
EL10Ac5g12462 Beta vulgaris HOM05D000978 ORTHO05D000813 3.1e-07 58.2 85 37.6
COL.COLO4_05164 Corchorus olitorius HOM05D000978 ORTHO05D000813 3.1e-07 58.2 60 46.7
CSS0018396 Camellia sinensis var. sinensis HOM05D000978 ORTHO05D000813 4.1e-07 57.8 91 36.3
ClCG10G000870 Citrullus lanatus HOM05D000978 ORTHO05D000813 4.1e-07 57.8 68 42.6
Duzib068G0432 Durio zibethinus HOM05D000978 ORTHO05D000813 4.1e-07 57.8 89 39.3
Gorai.004G073000 Gossypium raimondii HOM05D000978 ORTHO05D000813 4.1e-07 57.8 74 40.5
MD14G1135600 Malus domestica HOM05D000978 ORTHO05D000813 4.1e-07 57.8 98 34.7
Phvul.L006001 Phaseolus vulgaris HOM05D000978 ORTHO05D000813 4.1e-07 57.8 91 38.5
Psat6g055680 Pisum sativum HOM05D000978 ORTHO05D000813 4.1e-07 57.8 55 50.9
Cpa.g.sc175.4 Carica papaya HOM05D000978 ORTHO05D000813 5.3e-07 57.4 110 37.3
PSO782G1128 Papaver somniferum HOM05D000978 ORTHO05D000813 5.3e-07 57.4 93 34.4
TAR375G0655 Trochodendron aralioides HOM05D000978 ORTHO05D000813 5.3e-07 57.4 98 34.7
AUR62019896 Chenopodium quinoa HOM05D000978 ORTHO05D000813 9.1e-07 56.6 79 35.4
FAN04G2827 Fragaria x ananassa HOM05D000978 ORTHO05D000813 9.1e-07 56.6 99 35.4
HanXRQChr03g0086231 Helianthus annuus HOM05D000978 ORTHO05D000813 9.1e-07 56.6 96 36.5
Lj2A158T89 Lonicera japonica HOM05D000978 ORTHO05D000813 9.1e-07 56.6 96 36.5
PSO063G3015 Papaver somniferum HOM05D000978 ORTHO05D000813 9.1e-07 56.6 93 34.4
VMungo0720G2959 Vigna mungo HOM05D000978 ORTHO05D000813 9.1e-07 56.6 91 37.4
FvH4_5g11300 Fragaria vesca HOM05D000978 ORTHO05D000813 1.2e-06 56.2 99 35.4
Lj5g0005546 Lotus japonicus HOM05D000978 ORTHO05D000813 1.2e-06 56.2 91 37.4
MBI04_g35985_MAGBIO Magnolia biondii HOM05D000978 ORTHO05D000813 1.2e-06 56.2 90 36.7
FAN18G4002 Fragaria x ananassa HOM05D000978 ORTHO05D000813 1.5e-06 55.8 99 35.4
CiPaw.03G261800 Carya illinoinensis HOM05D000978 ORTHO05D000813 2.0e-06 55.5 74 41.9
FAN13G0444 Fragaria x ananassa HOM05D000978 ORTHO05D000813 2.0e-06 55.5 99 35.4
FAN27G3149 Fragaria x ananassa HOM05D000978 ORTHO05D000813 2.6e-06 55.1 81 35.8
Lsat_1_v5_gn_3_13540 Lactuca sativa HOM05D000978 ORTHO05D000813 2.6e-06 55.1 94 34.0
PGR119G0843 Punica granatum HOM05D000978 ORTHO05D000813 2.6e-06 55.1 73 39.7
TAR629G0965 Trochodendron aralioides HOM05D000265 ORTHO05D000813 2.6e-06 55.1 98 33.7
HanXRQChr07g0189271 Helianthus annuus HOM05D000978 ORTHO05D000813 3.4e-06 54.7 94 36.2
PSO384G1747 Papaver somniferum HOM05D000978 ORTHO05D000813 3.4e-06 54.7 86 37.2
Psat6g053800 Pisum sativum HOM05D000978 ORTHO05D000813 3.4e-06 54.7 76 39.5
Prupe.5G127100 Prunus persica HOM05D000978 ORTHO05D000813 3.4e-06 54.7 98 33.7
QL01p019775 Quercus lobata HOM05D000978 ORTHO05D000813 3.4e-06 54.7 92 34.8
Zm00001eb407240 Zea mays HOM05D000978 ORTHO05D000813 3.4e-06 54.7 82 36.6
Ciclev10018993m.g Citrus clementina HOM05D000978 ORTHO05D000813 4.5e-06 54.3 74 39.2
FAN15G1929 Fragaria x ananassa HOM05D000978 ORTHO05D000813 4.5e-06 54.3 74 37.8
PSO135G0358 Papaver somniferum HOM05D000978 ORTHO05D000813 4.5e-06 54.3 94 34.0
PSO384G4985 Papaver somniferum HOM05D000978 ORTHO05D000813 4.5e-06 54.3 94 34.0
Sc22g0004770 Simmondsia chinensis HOM05D000978 ORTHO05D000813 4.5e-06 54.3 76 36.8
Actinidia27296 Actinidia chinensis HOM05D000978 ORTHO05D000813 5.9e-06 53.9 98 35.7
FAN20G2040 Fragaria x ananassa HOM05D000978 ORTHO05D000813 5.9e-06 53.9 74 36.5
Hma1.2p1_0456F.1_g156490 Hydrangea macrophylla HOM05D000978 ORTHO05D000813 5.9e-06 53.9 98 34.7
MBI12_g20254_MAGBIO Magnolia biondii HOM05D000978 ORTHO05D000813 5.9e-06 53.9 98 32.7
RcHm_v2.0_Chr7g0186541 Rosa chinensis HOM05D000978 ORTHO05D000813 5.9e-06 53.9 99 34.3
Ah.12g053030 Amaranthus hybridus HOM05D000978 ORTHO05D000813 7.7e-06 53.5 76 36.8
Dinv09383 Davidia involucrata HOM05D000978 ORTHO05D000813 7.7e-06 53.5 92 34.8
Dinv18835 Davidia involucrata HOM05D000978 ORTHO05D000813 7.7e-06 53.5 76 39.5
MD10G1186300 Malus domestica HOM05D000978 ORTHO05D000813 7.7e-06 53.5 82 34.1
PSO339G2018 Papaver somniferum HOM05D000978 ORTHO05D000813 7.7e-06 53.5 86 36.0
Phvul.006G000400 Phaseolus vulgaris HOM05D000978 ORTHO05D000813 7.7e-06 53.5 76 38.2
Hund18795 Selenicereus undatus HOM05D000978 ORTHO05D000813 7.7e-06 53.5 62 43.5
vmacro13866 Vaccinium macrocarpon HOM05D000978 ORTHO05D000813 7.7e-06 53.5 92 34.8
GSVIVG01019626001 Vitis vinifera HOM05D000978 ORTHO05D000813 7.7e-06 53.5 92 34.8


User provided reference genes

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