Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT5G24130 Arabidopsis thaliana HOM05D000974 ORTHO05D007456 7.2e-173 610.5 317 100.0
AL6G35490 Arabidopsis lyrata HOM05D000974 ORTHO05D007456 6.1e-164 580.9 315 95.6
CARHR189450 Cardamine hirsuta HOM05D000974 ORTHO05D007456 2.6e-154 548.9 315 90.2
Thhalv10005277m.g Eutrema salsugineum HOM05D000974 ORTHO05D007456 2.4e-152 542.3 315 89.8
Sp2g23180 Schrenkiella parvula HOM05D000974 ORTHO05D007456 8.5e-150 533.9 316 89.6
A06p34970 Brassica napus HOM05D000974 ORTHO05D007456 1.1e-149 533.5 315 87.9
BraA06t26421Z Brassica rapa HOM05D000974 ORTHO05D007456 1.1e-149 533.5 315 87.9
C07p43580 Brassica napus HOM05D000974 ORTHO05D007456 9.4e-149 530.4 315 87.3
BolC7t44885H Brassica oleracea HOM05D000974 ORTHO05D007456 9.4e-149 530.4 315 87.3
BcaNung01815 Brassica carinata HOM05D000974 ORTHO05D007456 6.1e-148 527.7 315 86.3
BcaNung01212 Brassica carinata HOM05D000974 ORTHO05D007456 5.2e-147 524.6 315 87.0
Carub.0006s2186 Capsella rubella HOM05D000974 ORTHO05D007456 1.2e-143 513.5 315 85.4
Aa31LG11G3400 Aethionema arabicum HOM05D000974 ORTHO05D007456 1.4e-136 490.0 315 80.3
THA.LOC104821367 Tarenaya hassleriana HOM05D000974 ORTHO05D007456 5.6e-125 451.4 315 75.2
Manes.06G157800 Manihot esculenta HOM05D000974 ORTHO05D007456 6.2e-100 368.2 315 61.9
Thecc.03G193600 Theobroma cacao HOM05D000974 ORTHO05D007456 2.6e-98 362.8 315 61.6
COL.COLO4_35640 Corchorus olitorius HOM05D000974 ORTHO05D007456 3.8e-97 359.0 268 67.5
Gohir.D09G178500 Gossypium hirsutum HOM05D000974 ORTHO05D007456 6.4e-97 358.2 315 61.0
Potri.015G021100 Populus trichocarpa HOM05D000974 ORTHO05D007456 8.4e-97 357.8 315 61.3
Potri.015G021400 Populus trichocarpa HOM05D000974 ORTHO05D007456 2.4e-96 356.3 315 61.0
Gorai.006G200500 Gossypium raimondii HOM05D000974 ORTHO05D007456 7.1e-96 354.8 315 60.3
TWI39G1278 Tripterygium wilfordii HOM05D000974 ORTHO05D007456 7.1e-96 354.8 315 61.0
Gohir.A09G183700 Gossypium hirsutum HOM05D000974 ORTHO05D007456 3.5e-95 352.4 315 59.0
FAN06G4709 Fragaria x ananassa HOM05D000974 ORTHO05D007456 4.6e-95 352.1 318 59.4
FAN10G1776 Fragaria x ananassa HOM05D000974 ORTHO05D007456 6.0e-95 351.7 318 59.4
FvH4_7g31090 Fragaria vesca HOM05D000974 ORTHO05D007456 2.3e-94 349.7 318 59.1
FAN06G0673 Fragaria x ananassa HOM05D000974 ORTHO05D007456 2.3e-94 349.7 318 59.1
MD07G1285800 Malus domestica HOM05D000974 ORTHO05D007456 3.0e-94 349.4 316 60.4
Ciclev10005489m.g Citrus clementina HOM05D000974 ORTHO05D007456 6.6e-94 348.2 315 59.4
Actinidia34202 Actinidia chinensis HOM05D000974 ORTHO05D007456 1.9e-93 346.7 314 61.1
Prupe.2G308000 Prunus persica HOM05D000974 ORTHO05D002201 2.5e-93 346.3 316 59.8
RcHm_v2.0_Chr1g0380171 Rosa chinensis HOM05D000974 ORTHO05D007456 2.5e-93 346.3 315 59.4
FAN03G2436 Fragaria x ananassa HOM05D000974 ORTHO05D006000 3.3e-93 345.9 316 58.9
AUR62006147 Chenopodium quinoa HOM05D000974 ORTHO05D007456 9.6e-93 344.4 314 60.2
Potri.012G031000 Populus trichocarpa HOM05D000974 ORTHO05D007456 3.6e-92 342.4 316 59.2
Oeu060978.1 Olea europaea HOM05D000974 ORTHO05D007456 1.1e-91 340.9 314 57.6
PGR142G2075 Punica granatum HOM05D000974 ORTHO05D007456 1.4e-91 340.5 315 58.4
MD01G1215900 Malus domestica HOM05D000974 ORTHO05D007456 1.8e-91 340.1 316 58.9
EL10Ac3g05342 Beta vulgaris HOM05D000974 ORTHO05D007456 2.4e-91 339.7 326 57.4
FAN10G1818 Fragaria x ananassa HOM05D000974 ORTHO05D006000 2.4e-91 339.7 316 58.2
arahy.Tifrunner.gnm1.ann1.D5FDUQ Arachis hypogaea HOM05D000974 ORTHO05D007456 3.1e-91 339.3 316 57.3
arahy.Tifrunner.gnm1.ann1.LG8YER Arachis hypogaea HOM05D000974 ORTHO05D007456 3.1e-91 339.3 316 57.3
CSS0027071 Camellia sinensis var. sinensis HOM05D000974 ORTHO05D007456 2.0e-90 336.7 315 58.4
PSO135G0499 Papaver somniferum HOM05D000974 ORTHO05D007456 1.3e-89 334.0 317 57.4
Ca_16682_v3 Cicer arietinum L. HOM05D000974 ORTHO05D007456 1.7e-89 333.6 314 57.3
CsaV3_5G000660 Cucumis sativus L. HOM05D000974 ORTHO05D007456 2.2e-89 333.2 316 57.6
Nitab4.5_0002589g0050 Nicotiana tabacum HOM05D000974 ORTHO05D007456 4.9e-89 332.0 317 59.0
Nitab4.5_0005625g0010 Nicotiana tabacum HOM05D000974 ORTHO05D007456 6.4e-89 331.6 317 59.0
Sabra12G0020600 Salix brachista HOM05D000974 ORTHO05D007456 6.4e-89 331.6 328 55.5
Haze_00118 Corylus avellana HOM05D000974 ORTHO05D007456 8.4e-89 331.3 315 57.5
Glyma.04G238050 Glycine max HOM05D000974 ORTHO05D007456 8.4e-89 331.3 315 55.6
PSO384G1506 Papaver somniferum HOM05D000974 ORTHO05D007456 8.4e-89 331.3 317 57.1
DCAR_020306 Daucus carota HOM05D000974 ORTHO05D007456 1.4e-88 330.5 316 58.9
CANSAT21G0519 Cannabis sativa HOM05D000974 ORTHO05D007456 1.9e-88 330.1 323 55.7
Lalb_Chr11g0066601 Lupinus albus HOM05D000974 ORTHO05D007456 1.9e-88 330.1 316 56.0
Glyma.06G125900 Glycine max HOM05D000974 ORTHO05D007456 3.2e-88 329.3 316 56.0
GSVIVG01028702001 Vitis vinifera HOM05D000974 ORTHO05D007456 4.2e-88 328.9 314 55.7
Cpa.g.sc34.147 Carica papaya HOM05D000974 ORTHO05D007456 5.4e-88 328.6 314 56.4
ClCG01G000560 Citrullus lanatus HOM05D000974 ORTHO05D007456 7.1e-88 328.2 316 57.0
Cc02_g01830 Coffea canephora HOM05D000974 ORTHO05D007456 9.3e-88 327.8 315 58.1
Migut.F00239 Erythranthe guttata HOM05D000974 ORTHO05D007456 9.3e-88 327.8 317 56.5
vmacro06564 Vaccinium macrocarpon HOM05D000974 ORTHO05D007456 2.7e-87 326.2 351 52.7
Peaxi162Scf00904g00123 Petunia axillaris HOM05D000974 ORTHO05D007456 6.0e-87 325.1 315 57.1
Dinv28331 Davidia involucrata HOM05D000974 ORTHO05D007456 1.3e-86 323.9 254 64.2
TPR.G17305 Trifolium pratense HOM05D000974 ORTHO05D007456 2.5e-85 319.7 317 55.8
AUR62019342 Chenopodium quinoa HOM05D000974 ORTHO05D007456 4.3e-85 318.9 314 57.3
VMungo1309G2916 Vigna mungo HOM05D000974 ORTHO05D007456 4.3e-85 318.9 314 52.2
Sed0023834 Sechium edule HOM05D000974 ORTHO05D007456 5.6e-85 318.5 316 54.7
Phvul.009G137800 Phaseolus vulgaris HOM05D000974 ORTHO05D007456 2.1e-84 316.6 314 52.9
Rhsim09G0204100 Rhododendron simsii HOM05D000974 ORTHO05D007456 6.2e-84 315.1 313 55.6
SalBow4G2102 Salvia bowleyana HOM05D000974 ORTHO05D007456 8.1e-84 314.7 315 55.6
Medtr3g090955 Medicago truncatula HOM05D000974 ORTHO05D007456 2.0e-82 310.1 264 60.6
TAR636G3288 Trochodendron aralioides HOM05D000974 ORTHO05D007456 2.6e-82 309.7 315 54.6
vmacro10108 Vaccinium macrocarpon HOM05D000974 ORTHO05D007456 1.7e-81 307.0 285 58.9
Rhsim03G0199900 Rhododendron simsii HOM05D000974 ORTHO05D007456 2.9e-81 306.2 315 54.0
Aqoxy7G00132 Aquilegia oxysepala HOM05D000974 ORTHO05D007456 3.2e-80 302.8 315 54.0
SGA_v2.0_scaffold192G40573 Striga asiatica HOM05D000974 ORTHO05D007456 5.5e-80 302.0 316 53.8
Lsat_1_v5_gn_9_57980 Lactuca sativa HOM05D000974 ORTHO05D007456 5.1e-78 295.4 318 54.1
Lj1A1013G39 Lonicera japonica HOM05D000974 ORTHO05D007456 2.5e-77 293.1 315 52.1
Lj1g0000480 Lotus japonicus HOM05D000974 ORTHO05D007456 1.1e-75 287.7 314 50.0
ECA232G4254 Erigeron canadensis HOM05D000974 ORTHO05D007456 6.9e-75 285.0 315 52.1
Psat5g079560 Pisum sativum HOM05D000974 ORTHO05D007456 3.4e-74 282.7 314 50.0
unitig_747.g21851 Utricularia gibba HOM05D000974 ORTHO05D007456 7.6e-74 281.6 267 54.3
Cfa016368 Carpinus fangiana HOM05D000974 ORTHO05D007456 2.2e-73 280.0 320 51.9
Duzib084G1361 Durio zibethinus HOM05D000974 ORTHO05D007456 2.9e-73 279.6 314 52.5
TAR375G0325 Trochodendron aralioides HOM05D000974 ORTHO05D007456 6.5e-73 278.5 316 51.3
Atru.chr1.258 Acer truncatum HOM05D000974 ORTHO05D007456 1.1e-72 277.7 315 50.8
Lsat_1_v5_gn_2_134181 Lactuca sativa HOM05D000974 ORTHO05D007456 3.2e-72 276.2 265 54.3
HanXRQChr09g0253031 Helianthus annuus HOM05D000974 ORTHO05D007456 9.3e-72 274.6 303 51.2
SalBow4G1511 Salvia bowleyana HOM05D000974 ORTHO05D007456 2.3e-70 270.0 315 49.8
HPP92_005207 Vanilla planifolia HOM05D000974 ORTHO05D007456 3.0e-70 269.6 317 48.9
HanXRQChr14g0462881 Helianthus annuus HOM05D000974 ORTHO05D007456 6.7e-70 268.5 258 55.0
MBI07_g34227_MAGBIO Magnolia biondii HOM05D000974 ORTHO05D007456 3.3e-69 266.2 316 49.7
Lj3A909T48 Lonicera japonica HOM05D000974 ORTHO05D007456 1.8e-67 260.4 279 52.3
Rhsim09G0204200 Rhododendron simsii HOM05D000974 ORTHO05D007456 2.6e-66 256.5 261 52.9
DCAR_014533 Daucus carota HOM05D000974 ORTHO05D007456 3.4e-66 256.1 316 46.8
Potri.015G021300 Populus trichocarpa HOM05D000974 ORTHO05D007456 2.9e-65 253.1 206 64.1
Oeu060979.1 Olea europaea HOM05D000974 ORTHO05D007456 6.5e-65 251.9 204 63.7
Zm00001eb238160 Zea mays HOM05D000974 ORTHO05D007456 1.9e-61 240.4 276 50.4
Nn1g01835 Nelumbo nucifera HOM05D000974 ORTHO05D007456 2.2e-60 236.9 316 46.5
QL09p010742 Quercus lobata HOM05D000974 ORTHO05D007456 1.7e-57 227.3 263 49.8
AagrBONN_evm.TU.Sc2ySwM_117.3541 Anthoceros agrestis HOM05D000974 ORTHO05D007456 4.5e-50 202.6 295 43.4
CDE10G0850 Ceratophyllum demersum HOM05D000974 ORTHO05D007456 2.2e-49 200.3 316 41.5
ECA238G2040 Erigeron canadensis HOM05D005084 ORTHO05D006254 5.0e-49 199.1 230 48.7
Zm00001eb345000 Zea mays HOM05D000974 ORTHO05D007456 2.5e-48 196.8 271 45.8
Os05g0586700 Oryza sativa ssp. japonica HOM05D000974 ORTHO05D007456 7.2e-48 195.3 299 42.8
Mapoly0123s0011 Marchantia polymorpha HOM05D000974 ORTHO05D007456 7.0e-43 178.7 263 41.4
Sopen03g003300 Solanum pennellii HOM05D000974 ORTHO05D007456 2.6e-42 176.8 185 53.5
Os02g0257200 Oryza sativa ssp. japonica HOM05D000974 ORTHO05D007456 6.5e-41 172.2 278 41.4
CiPaw.05G257400 Carya illinoinensis HOM05D000974 ORTHO05D007456 1.9e-40 170.6 135 66.7
PGSC0003DMG400009074 Solanum tuberosum HOM05D000974 ORTHO05D007456 1.6e-39 167.5 205 48.8
Pp3c2_19140 Physcomitrium patens HOM05D000974 ORTHO05D007456 7.5e-37 158.7 288 37.5
MBI07_g45742_MAGBIO Magnolia biondii HOM05D000974 ORTHO05D007456 4.1e-35 152.9 315 34.6
Oeu060977.1 Olea europaea HOM05D000974 ORTHO05D007456 2.0e-34 150.6 123 62.6
SMO347G0394 Selaginella moellendorffii HOM05D000974 ORTHO05D007456 1.7e-33 147.5 313 34.5
Lalb_Chr08g0240561 Lupinus albus HOM05D000974 ORTHO05D007456 3.6e-31 139.8 120 62.5
Actinidia08630 Actinidia chinensis HOM05D000974 ORTHO05D007456 1.2e-29 134.8 112 66.1
CiPaw.05G257300 Carya illinoinensis HOM05D000974 ORTHO05D007456 1.2e-26 124.8 115 55.7
Rhsim02G0197500 Rhododendron simsii HOM05D000974 ORTHO05D007456 1.0e-25 121.7 178 41.0
ATR0589G055 Amborella trichopoda HOM05D000974 ORTHO05D007456 2.9e-25 120.2 120 52.5
Rhsim04G0082700 Rhododendron simsii HOM05D000974 ORTHO05D007456 5.0e-25 119.4 178 40.4
Lalb_Chr08g0240551 Lupinus albus HOM05D000974 ORTHO05D007456 1.9e-24 117.5 124 50.0
FAN01G0307 Fragaria x ananassa HOM05D000974 ORTHO05D007456 1.6e-23 114.4 318 31.4
Hma1.2p1_1655F.1_g295980 Hydrangea macrophylla HOM05D000974 ORTHO05D007456 2.8e-23 113.6 197 38.6
Pp3c3_31670 Physcomitrium patens HOM05D000974 ORTHO05D007456 8.3e-20 102.1 161 39.8
vmacro10109 Vaccinium macrocarpon HOM05D000974 ORTHO05D007456 7.0e-19 99.0 149 40.3
Lalb_Chr08g0240541 Lupinus albus HOM05D000974 ORTHO05D007456 8.6e-17 92.0 111 44.1
TAR629G1462 Trochodendron aralioides HOM05D000974 ORTHO05D007456 2.8e-15 87.0 104 46.2
CDE10G0750 Ceratophyllum demersum HOM05D000974 ORTHO05D007456 1.0e-14 85.1 138 38.4
Atru.chr1.262 Acer truncatum HOM05D000974 ORTHO05D007456 3.0e-14 83.6 111 41.4
ATR0589G008 Amborella trichopoda HOM05D000974 ORTHO05D007456 6.6e-09 65.9 121 40.5
COL.COLO4_02792 Corchorus olitorius HOM05D000974 ORTHO05D007456 4.7e-07 59.7 35 77.1


User provided reference genes

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