Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT5G23340 Arabidopsis thaliana HOM05D006667 ORTHO05D008387 4.8e-129 465.3 406 100.0
AL6G34600 Arabidopsis lyrata HOM05D006667 ORTHO05D008387 2.4e-125 453.0 406 95.1
Thhalv10004329m.g Eutrema salsugineum HOM05D006667 ORTHO05D008387 1.7e-118 430.3 406 92.4
CARHR190200 Cardamine hirsuta HOM05D006667 ORTHO05D008387 2.9e-118 429.5 406 91.4
BraA06t26360Z Brassica rapa HOM05D006667 ORTHO05D008387 5.5e-117 425.2 406 89.7
Aa31LG11G2790 Aethionema arabicum HOM05D006667 ORTHO05D008387 7.1e-117 424.9 406 90.4
A06p34280 Brassica napus HOM05D006667 ORTHO05D008387 7.9e-116 421.4 406 92.6
C07p44230 Brassica napus HOM05D006667 ORTHO05D008387 5.1e-115 418.7 406 88.7
BolC7t44948H Brassica oleracea HOM05D006667 ORTHO05D008387 1.9e-114 416.8 406 92.1
Carub.0006s2112 Capsella rubella HOM05D006667 ORTHO05D008387 3.7e-113 412.5 406 90.1
BcaC03g18029 Brassica carinata HOM05D006667 ORTHO05D008387 4.8e-113 412.1 405 85.4
C02p60910 Brassica napus HOM05D006667 ORTHO05D008387 4.8e-113 412.1 405 85.4
A02p41020 Brassica napus HOM05D006667 ORTHO05D008387 1.8e-112 410.2 405 86.2
BraA02t09050Z Brassica rapa HOM05D006667 ORTHO05D008387 4.5e-111 405.6 405 86.2
THA.LOC104819372 Tarenaya hassleriana HOM05D006667 ORTHO05D008387 7.2e-109 398.3 405 86.9
Sp2g23820 Schrenkiella parvula HOM05D006667 ORTHO05D008387 1.0e-107 394.4 406 86.7
BcaB07g29860 Brassica carinata HOM05D006667 ORTHO05D008387 3.2e-101 372.9 405 85.4
Prupe.1G349400 Prunus persica HOM05D006667 ORTHO05D008387 1.4e-96 357.5 405 76.8
Dinv07500 Davidia involucrata HOM05D006667 ORTHO05D008387 2.0e-95 353.6 404 80.2
Medtr1g114610 Medicago truncatula HOM05D006667 ORTHO05D008387 2.2e-94 350.1 407 76.7
Actinidia04346 Actinidia chinensis HOM05D006667 ORTHO05D008387 2.9e-94 349.7 406 75.1
QL03p045401 Quercus lobata HOM05D006667 ORTHO05D008387 1.1e-93 347.8 405 78.0
CSS0023228 Camellia sinensis var. sinensis HOM05D006667 ORTHO05D008387 7.2e-93 345.1 407 80.6
Cpa.g.sc60.94 Carica papaya HOM05D006667 ORTHO05D008387 7.2e-93 345.1 408 80.4
Psat6g234200 Pisum sativum HOM05D006667 ORTHO05D008387 1.6e-92 344.0 405 73.6
Rhsim12G0089400 Rhododendron simsii HOM05D006667 ORTHO05D008387 5.7e-90 335.5 406 73.4
Migut.L00803 Erythranthe guttata HOM05D006667 ORTHO05D008387 1.1e-88 331.3 404 76.7
VMungo0720G1985 Vigna mungo HOM05D006667 ORTHO05D008387 1.1e-88 331.3 406 71.7
FvH4_4g37160 Fragaria vesca HOM05D006667 ORTHO05D008387 1.8e-88 330.5 404 74.3
Sabra05G0073100 Salix brachista HOM05D006667 ORTHO05D008387 3.1e-88 329.7 399 73.7
MELO3C011757.2 Cucumis melo HOM05D006667 ORTHO05D008387 4.1e-88 329.3 405 73.6
FAN12G3199 Fragaria x ananassa HOM05D006667 ORTHO05D008387 4.1e-88 329.3 404 74.0
Hma1.2p1_0044F.1_g026320 Hydrangea macrophylla HOM05D006667 ORTHO05D008387 7.0e-88 328.6 402 80.8
Peaxi162Scf00681g00319 Petunia axillaris HOM05D006667 ORTHO05D008387 9.1e-88 328.2 407 74.9
SalBow2G2931 Salvia bowleyana HOM05D006667 ORTHO05D008387 1.2e-87 327.8 400 79.0
arahy.Tifrunner.gnm1.ann1.IH6UK4 Arachis hypogaea HOM05D006667 ORTHO05D008387 1.6e-87 327.4 406 73.9
CiPaw.05G172300 Carya illinoinensis HOM05D006667 ORTHO05D008387 1.6e-87 327.4 404 77.5
CsaV3_5G029020 Cucumis sativus L. HOM05D006667 ORTHO05D008387 1.6e-87 327.4 405 73.1
Solyc04g008980.3 Solanum lycopersicum HOM05D006667 ORTHO05D008387 1.6e-87 327.4 403 78.4
Ciclev10033734m.g Citrus clementina HOM05D006667 ORTHO05D008387 2.6e-87 326.6 405 72.1
Lj5g0023243 Lotus japonicus HOM05D006667 ORTHO05D008387 3.5e-87 326.2 406 72.9
PGSC0003DMG400011513 Solanum tuberosum HOM05D006667 ORTHO05D008387 3.5e-87 326.2 403 73.2
Potri.005G088800 Populus trichocarpa HOM05D006667 ORTHO05D008387 7.7e-87 325.1 405 71.9
TAR622G0133 Trochodendron aralioides HOM05D006667 ORTHO05D008387 7.7e-87 325.1 404 73.5
Sopen04g004160 Solanum pennellii HOM05D006667 ORTHO05D008387 3.8e-86 322.8 403 77.7
RcHm_v2.0_Chr4g0446961 Rosa chinensis HOM05D006667 ORTHO05D008387 6.5e-86 322.0 405 74.1
Hund24389 Selenicereus undatus HOM05D006667 ORTHO05D008387 1.2e-84 317.8 407 75.2
EL10Ac9g22983 Beta vulgaris HOM05D006667 ORTHO05D008387 2.1e-84 317.0 405 77.0
ClCG02G014160 Citrullus lanatus HOM05D006667 ORTHO05D008387 2.1e-84 317.0 405 75.1
Lj6A708T61 Lonicera japonica HOM05D006667 ORTHO05D008387 2.7e-84 316.6 407 71.7
Lj6A713T75 Lonicera japonica HOM05D006667 ORTHO05D008387 2.7e-84 316.6 407 71.7
Gohir.D12G135900 Gossypium hirsutum HOM05D006667 ORTHO05D008387 4.7e-84 315.8 404 76.5
Gorai.008G147100 Gossypium raimondii HOM05D006667 ORTHO05D008387 4.7e-84 315.8 404 76.5
Nitab4.5_0004979g0060 Nicotiana tabacum HOM05D006667 ORTHO05D008387 4.7e-84 315.8 407 75.4
Lalb_Chr02g0143651 Lupinus albus HOM05D006667 ORTHO05D008387 6.1e-84 315.5 406 71.4
Nitab4.5_0005997g0030 Nicotiana tabacum HOM05D006667 ORTHO05D008387 8.0e-84 315.1 407 75.9
Sed0022119 Sechium edule HOM05D006667 ORTHO05D008387 1.4e-83 314.3 404 74.5
Thecc.02G154400 Theobroma cacao HOM05D006667 ORTHO05D008387 1.4e-83 314.3 405 76.5
Sabra07G0063900 Salix brachista HOM05D006667 ORTHO05D008387 2.3e-83 313.5 468 58.1
Glyma.20G102500 Glycine max HOM05D006667 ORTHO05D008387 1.2e-82 311.2 406 75.4
Sed0011343 Sechium edule HOM05D006667 ORTHO05D008387 1.2e-82 311.2 405 73.3
Aqoxy3G04313 Aquilegia oxysepala HOM05D006667 ORTHO05D008387 3.3e-82 309.7 403 67.7
TWI74G1436 Tripterygium wilfordii HOM05D006667 ORTHO05D008387 5.7e-82 308.9 405 75.1
CANSAT78G2402 Cannabis sativa HOM05D006667 ORTHO05D008387 7.5e-82 308.5 405 72.6
arahy.Tifrunner.gnm1.ann1.F8B6JQ Arachis hypogaea HOM05D006667 ORTHO05D008387 9.7e-82 308.1 392 74.0
Manes.04G162700 Manihot esculenta HOM05D006667 ORTHO05D008387 3.7e-81 306.2 404 76.0
Glyma.10G286600 Glycine max HOM05D006667 ORTHO05D008387 2.4e-80 303.5 407 72.0
Atru.chr11.1242 Acer truncatum HOM05D006667 ORTHO05D008387 4.5e-79 299.3 406 73.9
CAN.G274.16 Capsicum annuum HOM05D006667 ORTHO05D008387 2.9e-78 296.6 400 74.5
MBI06_g27487_MAGBIO Magnolia biondii HOM05D006667 ORTHO05D008387 8.5e-78 295.0 397 74.3
DCAR_002607 Daucus carota HOM05D006667 ORTHO05D008387 1.5e-77 294.3 407 68.1
TPR.G4129 Trifolium pratense HOM05D006667 ORTHO05D008387 1.9e-77 293.9 406 70.9
MSTRG.8092 Avicennia marina HOM05D006667 ORTHO05D008387 2.5e-77 293.5 402 75.4
Cfa008778 Carpinus fangiana HOM05D006667 ORTHO05D008387 5.5e-77 292.4 414 67.4
PGR142G2507 Punica granatum HOM05D006667 ORTHO05D008387 1.0e-75 288.1 401 74.1
Sc10g0006700 Simmondsia chinensis HOM05D006667 ORTHO05D008387 1.0e-75 288.1 401 69.6
SGA_v2.0_scaffold80G25957 Striga asiatica HOM05D006667 ORTHO05D008387 1.4e-72 277.7 405 73.6
AUR62032948 Chenopodium quinoa HOM05D006667 ORTHO05D008387 3.1e-72 276.6 407 68.1
unitig_749.g13342 Utricularia gibba HOM05D006667 ORTHO05D008387 6.6e-70 268.9 400 67.0
Hma1.2p1_0044F.1_g026310 Hydrangea macrophylla HOM05D006667 ORTHO05D008387 1.2e-68 264.6 432 54.2
vmacro15997 Vaccinium macrocarpon HOM05D006667 ORTHO05D008387 3.6e-68 263.1 536 36.4
Ca_11261_v3 Cicer arietinum L. HOM05D006667 ORTHO05D008387 8.0e-68 261.9 407 67.6
CDE04G2906 Ceratophyllum demersum HOM05D006667 ORTHO05D008387 1.8e-67 260.8 397 74.3
PSO017G3027 Papaver somniferum HOM05D006667 ORTHO05D008387 2.6e-66 256.9 403 75.4
Ah.03g147880 Amaranthus hybridus HOM05D006667 ORTHO05D008387 4.4e-66 256.1 418 62.0
COL.COLO4_33111 Corchorus olitorius HOM05D006667 ORTHO05D008387 2.8e-65 253.4 402 70.9
Eucgr.G02589 Eucalyptus grandis HOM05D006667 ORTHO05D008387 3.7e-65 253.1 404 69.6
Zm00001eb185570 Zea mays HOM05D006667 ORTHO05D008387 1.1e-64 251.5 398 60.6
Haze_11790 Corylus avellana HOM05D006667 ORTHO05D008387 4.1e-64 249.6 409 67.5
TWI53G1716 Tripterygium wilfordii HOM05D006667 ORTHO05D008387 3.2e-56 223.4 405 68.6
Oeu027930.1 Olea europaea HOM05D006667 ORTHO05D008387 1.0e-54 218.4 401 70.3
ECA246G5028 Erigeron canadensis HOM05D002605 ORTHO05D002842 3.0e-54 216.9 398 68.6
HanXRQChr17g0541041 Helianthus annuus HOM05D006667 ORTHO05D008387 3.9e-54 216.5 404 69.1
Lsat_1_v5_gn_3_34481 Lactuca sativa HOM05D006667 ORTHO05D008387 2.5e-53 213.8 400 69.5
AUR62017733 Chenopodium quinoa HOM05D006667 ORTHO05D008387 2.3e-51 207.2 421 54.4
PSO170G5099 Papaver somniferum HOM05D006667 ORTHO05D008387 6.6e-46 189.1 403 68.5
Nn3g18579 Nelumbo nucifera HOM05D006667 ORTHO05D008387 1.1e-43 181.8 404 68.1
Gohir.A12G132300 Gossypium hirsutum HOM05D006667 ORTHO05D008387 3.1e-43 180.3 180 62.2
Phvul.007G014200 Phaseolus vulgaris HOM05D006667 ORTHO05D008387 8.3e-41 172.2 180 59.4
SEGI_01489 Sequoiadendron giganteum HOM05D006667 ORTHO05D008387 4.1e-40 169.9 399 63.9
HanXRQChr06g0171711 Helianthus annuus HOM05D006667 ORTHO05D008387 9.2e-40 168.7 393 62.6
Os02g0636400 Oryza sativa ssp. japonica HOM05D006667 ORTHO05D008387 1.2e-39 168.3 176 53.4
arahy.Tifrunner.gnm1.ann1.6XP1A8 Arachis hypogaea HOM05D006667 ORTHO05D008387 2.1e-39 167.5 108 70.4
arahy.Tifrunner.gnm1.ann1.RI7T4X Arachis hypogaea HOM05D006667 ORTHO05D008387 2.1e-39 167.5 108 70.4
ATR0618G066 Amborella trichopoda HOM05D006667 ORTHO05D008387 3.0e-38 163.7 397 65.7
arahy.Tifrunner.gnm1.ann1.ALJ85P Arachis hypogaea HOM05D006667 ORTHO05D008387 1.2e-34 151.8 96 71.9
HPP92_025485 Vanilla planifolia HOM05D006667 ORTHO05D008387 7.6e-34 149.1 108 63.0
arahy.Tifrunner.gnm1.ann1.L6WSTP Arachis hypogaea HOM05D006667 ORTHO05D008387 1.9e-32 144.4 92 71.7
Ca_11262_v3 Cicer arietinum L. HOM05D006667 ORTHO05D008387 2.3e-30 137.5 180 45.0
SMO116G0353 Selaginella moellendorffii HOM05D006667 ORTHO05D008387 6.2e-28 129.4 107 54.2
Dinv17648 Davidia involucrata HOM05D006667 ORTHO05D008387 9.0e-27 125.6 108 57.4
Potri.007G075600 Populus trichocarpa HOM05D006667 ORTHO05D008387 2.9e-25 120.6 392 40.3
Medtr7g010500 Medicago truncatula HOM05D006667 ORTHO05D008387 1.8e-19 101.3 70 68.6
BcaC04g21805 Brassica carinata HOM05D006667 ORTHO05D008387 4.2e-08 63.5 82 61.0
Sopen08g020490 Solanum pennellii HOM05D002813 ORTHO05D003203 6.0e-07 59.7 87 36.8
Migut.N00691 Erythranthe guttata HOM05D005998 ORTHO05D007664 1.3e-06 58.5 71 42.3
MD12G1181200 Malus domestica HOM05D002125 ORTHO05D002105 1.3e-06 58.5 86 34.9
Nitab4.5_0003794g0040 Nicotiana tabacum HOM05D002813 ORTHO05D003203 1.3e-06 58.5 87 36.8
PGSC0003DMG400002228 Solanum tuberosum HOM05D002813 ORTHO05D003203 1.8e-06 58.2 87 35.6
CBR_g11992 Chara braunii HOM05D002125 ORTHO05D008387 3.9e-06 57.0 96 35.4
Actinidia23131 Actinidia chinensis HOM05D005998 ORTHO05D007664 5.1e-06 56.6 136 28.7
Pp3c10_8230 Physcomitrium patens HOM05D006667 ORTHO05D008387 5.1e-06 56.6 58 46.6


User provided reference genes

Program Settings