Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT5G23330 Arabidopsis thaliana HOM05D006471 ORTHO05D008157 5.2e-204 714.1 355 100.0
AL6G34590 Arabidopsis lyrata HOM05D006471 ORTHO05D008157 3.7e-178 628.2 358 89.9
CARHR204730 Cardamine hirsuta HOM05D006471 ORTHO05D008157 7.8e-136 487.6 370 68.1
Carub.0006s0724 Capsella rubella HOM05D006471 ORTHO05D008157 6.6e-135 484.6 369 66.9
Aa31LG3G18230 Aethionema arabicum HOM05D006471 ORTHO05D005636 1.1e-134 483.8 368 69.0
CARHR190210 Cardamine hirsuta HOM05D006471 ORTHO05D008157 1.5e-134 483.4 291 83.8
AL6G18780 Arabidopsis lyrata HOM05D006471 ORTHO05D008157 1.9e-134 483.0 371 67.4
Thhalv10013886m.g Eutrema salsugineum HOM05D006471 ORTHO05D008157 5.6e-134 481.5 370 67.8
AT5G08340 Arabidopsis thaliana HOM05D006471 ORTHO05D008157 2.8e-133 479.2 371 66.6
THA.LOC104800739 Tarenaya hassleriana HOM05D006471 ORTHO05D008157 4.5e-131 471.9 373 66.0
Sp6g34600 Schrenkiella parvula HOM05D006471 ORTHO05D008157 1.7e-130 469.9 371 66.6
BcaB01g05611 Brassica carinata HOM05D006471 ORTHO05D008157 1.3e-125 453.8 370 63.5
THA.LOC104818378 Tarenaya hassleriana HOM05D006471 ORTHO05D008157 1.7e-122 443.4 378 63.0
A03p03780 Brassica napus HOM05D006471 ORTHO05D008157 2.7e-120 436.0 371 63.1
BraA03t09725Z Brassica rapa HOM05D006471 ORTHO05D008157 4.6e-120 435.3 371 63.6
C03p04260 Brassica napus HOM05D006471 ORTHO05D008157 8.7e-119 431.0 372 63.2
BolC3t12958H Brassica oleracea HOM05D006471 ORTHO05D008157 8.7e-119 431.0 372 63.2
Atru.chr11.1240 Acer truncatum HOM05D006471 ORTHO05D008157 1.4e-116 423.7 371 59.6
Ciclev10031833m.g Citrus clementina HOM05D006471 ORTHO05D008157 5.8e-115 418.3 378 58.7
BcaB01g05607 Brassica carinata HOM05D006471 ORTHO05D008157 7.9e-112 407.9 312 67.9
Manes.04G162800 Manihot esculenta HOM05D006471 ORTHO05D008157 5.1e-111 405.2 373 56.6
Cpa.g.sc60.91 Carica papaya HOM05D006471 ORTHO05D008157 1.1e-110 404.1 380 58.9
Thecc.02G154800 Theobroma cacao HOM05D006471 ORTHO05D008157 9.0e-108 394.4 372 56.7
Gorai.012G135400 Gossypium raimondii HOM05D006471 ORTHO05D008157 1.2e-107 394.0 373 55.8
Gohir.A04G109424 Gossypium hirsutum HOM05D006471 ORTHO05D008157 7.7e-107 391.3 373 56.3
Dinv17647 Davidia involucrata HOM05D000200 ORTHO05D001546 1.3e-106 390.6 348 58.0
Gohir.D04G148900 Gossypium hirsutum HOM05D006471 ORTHO05D008157 1.7e-106 390.2 373 55.2
Carub.0006s2111 Capsella rubella HOM05D006471 ORTHO05D008157 3.8e-106 389.0 229 88.6
Haze_11788 Corylus avellana HOM05D006471 ORTHO05D008157 5.0e-106 388.7 376 56.4
Duzib132G0448 Durio zibethinus HOM05D006471 ORTHO05D008157 8.5e-106 387.9 373 56.6
Hma1.2p1_0044F.1_g026290 Hydrangea macrophylla HOM05D006471 ORTHO05D008157 2.5e-105 386.3 382 56.5
Cfa008776 Carpinus fangiana HOM05D006471 ORTHO05D008157 4.2e-105 385.6 376 55.9
COL.COLO4_33107 Corchorus olitorius HOM05D006471 ORTHO05D008157 5.5e-105 385.2 373 55.5
CiPaw.05G172000 Carya illinoinensis HOM05D006471 ORTHO05D008157 1.6e-104 383.6 375 54.7
TAR628G0373 Trochodendron aralioides HOM05D006471 ORTHO05D008157 6.1e-104 381.7 333 58.3
TWI74G1585 Tripterygium wilfordii HOM05D006471 ORTHO05D008157 7.9e-104 381.3 318 61.0
Duzib248G0471 Durio zibethinus HOM05D000200 ORTHO05D001546 1.0e-103 380.9 292 64.0
TWI77G0721 Tripterygium wilfordii HOM05D006471 ORTHO05D008157 1.4e-103 380.6 305 62.6
Potri.007G075500 Populus trichocarpa HOM05D006471 ORTHO05D008157 1.5e-102 377.1 345 57.7
EL10Ac9g22981 Beta vulgaris HOM05D006471 ORTHO05D008157 3.3e-102 375.9 336 59.8
AUR62017731 Chenopodium quinoa HOM05D006471 ORTHO05D008157 3.3e-102 375.9 290 63.8
Lj5g0013377 Lotus japonicus HOM05D006471 ORTHO05D008157 9.7e-102 374.4 312 61.2
CSS0032634 Camellia sinensis var. sinensis HOM05D006471 ORTHO05D008157 2.2e-101 373.2 344 58.7
PGR142G1667 Punica granatum HOM05D006471 ORTHO05D008157 4.8e-101 372.1 370 55.4
CSS0035224 Camellia sinensis var. sinensis HOM05D006471 ORTHO05D008157 6.3e-101 371.7 344 58.4
Glyma.10G286400 Glycine max HOM05D006471 ORTHO05D008157 1.4e-100 370.5 320 58.8
Sc10g0006980 Simmondsia chinensis HOM05D006471 ORTHO05D008157 2.4e-100 369.8 288 63.5
AUR62032950 Chenopodium quinoa HOM05D006471 ORTHO05D008157 9.1e-100 367.9 292 63.0
Cfa014781 Carpinus fangiana HOM05D006857 ORTHO05D008679 3.4e-99 365.9 289 62.6
Phvul.007G014500 Phaseolus vulgaris HOM05D006471 ORTHO05D008157 4.5e-99 365.5 331 57.4
Psat6g234000 Pisum sativum HOM05D006471 ORTHO05D008157 4.5e-99 365.5 303 61.1
Sabra07G0063800 Salix brachista HOM05D006471 ORTHO05D008157 4.5e-99 365.5 294 63.3
CANSAT78G1799 Cannabis sativa HOM05D006471 ORTHO05D008157 5.9e-99 365.2 359 54.9
Actinidia04343 Actinidia chinensis HOM05D006471 ORTHO05D008157 1.0e-98 364.4 298 60.7
MBI06_g44273_MAGBIO Magnolia biondii HOM05D006471 ORTHO05D008157 1.0e-98 364.4 314 58.9
RcHm_v2.0_Chr4g0446941 Rosa chinensis HOM05D006471 ORTHO05D008157 1.3e-98 364.0 382 53.9
VMungo0720G2382 Vigna mungo HOM05D006471 ORTHO05D008157 1.3e-98 364.0 331 57.1
TPR.G4059 Trifolium pratense HOM05D006471 ORTHO05D008157 1.7e-98 363.6 364 53.8
GSVIVG01034416001 Vitis vinifera HOM05D006471 ORTHO05D008157 3.8e-98 362.5 283 63.3
MD16G1004200 Malus domestica HOM05D006471 ORTHO05D008157 6.5e-98 361.7 304 61.5
Eucgr.G02586 Eucalyptus grandis HOM05D006471 ORTHO05D008157 8.5e-98 361.3 298 60.1
FvH4_4g37140 Fragaria vesca HOM05D006471 ORTHO05D008157 1.1e-97 360.9 371 53.1
arahy.Tifrunner.gnm1.ann1.EW69V8 Arachis hypogaea HOM05D006471 ORTHO05D008157 3.2e-97 359.4 366 53.3
MSTRG.428 Avicennia marina HOM05D006471 ORTHO05D008157 3.2e-97 359.4 298 60.4
Rhsim12G0193800 Rhododendron simsii HOM05D006471 ORTHO05D008157 1.6e-96 357.1 290 61.7
Peaxi162Scf00681g00221 Petunia axillaris HOM05D006471 ORTHO05D008157 2.1e-96 356.7 379 51.5
Ah.16g106450 Amaranthus hybridus HOM05D000154 ORTHO05D000092 1.8e-95 353.6 339 55.8
Solyc04g008990.3 Solanum lycopersicum HOM05D006471 ORTHO05D008157 3.9e-95 352.4 366 53.3
Medtr1g114560 Medicago truncatula HOM05D006471 ORTHO05D008157 6.7e-95 351.7 300 60.7
SalBow2G1748 Salvia bowleyana HOM05D006471 ORTHO05D008157 1.1e-94 350.9 294 60.9
Migut.L00869 Erythranthe guttata HOM05D006471 ORTHO05D008157 2.6e-94 349.7 296 61.1
Ca_11258_v3 Cicer arietinum L. HOM05D000200 ORTHO05D001546 7.4e-94 348.2 289 60.9
Sopen04g004170 Solanum pennellii HOM05D006471 ORTHO05D008157 7.4e-94 348.2 365 52.6
PGSC0003DMG400011512 Solanum tuberosum HOM05D006471 ORTHO05D008157 1.3e-93 347.4 371 52.6
DCAR_002605 Daucus carota HOM05D000200 ORTHO05D001546 2.2e-93 346.7 331 53.8
PSO170G1614 Papaver somniferum HOM05D006471 ORTHO05D008157 2.8e-93 346.3 304 57.9
Lj3A846G60 Lonicera japonica HOM05D006471 ORTHO05D008157 6.3e-93 345.1 272 63.2
CsaV3_5G029010 Cucumis sativus L. HOM05D006471 ORTHO05D008157 8.2e-93 344.7 353 53.5
HanXRQChr03g0076951 Helianthus annuus HOM05D006471 ORTHO05D008157 1.4e-92 344.0 290 61.0
Lalb_Chr06g0163931 Lupinus albus HOM05D006471 ORTHO05D008157 7.0e-92 341.7 318 56.6
PSO782G0560 Papaver somniferum HOM05D006471 ORTHO05D008157 9.1e-92 341.3 325 55.4
CAN.G274.15 Capsicum annuum HOM05D006471 ORTHO05D008157 2.6e-91 339.7 314 56.4
vmacro16923 Vaccinium macrocarpon HOM05D006471 ORTHO05D008157 4.5e-91 339.0 277 61.0
Nitab4.5_0005997g0050 Nicotiana tabacum HOM05D006471 ORTHO05D008157 2.9e-90 336.3 278 61.9
MSTRG.8091 Avicennia marina HOM05D006471 ORTHO05D008157 3.8e-90 335.9 293 59.0
Aqoxy2G00030 Aquilegia oxysepala HOM05D006471 ORTHO05D008157 6.5e-90 335.1 291 58.1
Nitab4.5_0004979g0070 Nicotiana tabacum HOM05D006471 ORTHO05D008157 1.9e-89 333.6 270 62.6
Nn2g12513 Nelumbo nucifera HOM05D006471 ORTHO05D008157 2.5e-89 333.2 292 58.2
Nn8g40194 Nelumbo nucifera HOM05D006471 ORTHO05D008157 7.2e-89 331.6 273 60.4
Sed0003381 Sechium edule HOM05D006471 ORTHO05D008157 2.1e-88 330.1 301 56.5
Aqoxy2G01235 Aquilegia oxysepala HOM05D006471 ORTHO05D008157 4.7e-88 328.9 315 54.3
Lsat_1_v5_gn_0_15460 Lactuca sativa HOM05D006471 ORTHO05D008157 1.0e-87 327.8 293 60.4
CDE02G4670 Ceratophyllum demersum HOM05D006471 ORTHO05D008157 4.4e-86 322.4 277 57.4
SGA_v2.0_scaffold92G28263 Striga asiatica HOM05D006471 ORTHO05D008157 5.7e-86 322.0 285 56.8
ClCG02G014150 Citrullus lanatus HOM05D006471 ORTHO05D008157 7.4e-86 321.6 409 45.2
Os03g0801700 Oryza sativa ssp. japonica HOM05D006471 ORTHO05D008157 1.1e-84 317.8 274 58.4
Oeu006329.1 Olea europaea HOM05D006471 ORTHO05D008157 1.4e-84 317.4 315 54.3
unitig_749.g13340 Utricularia gibba HOM05D006471 ORTHO05D008157 4.1e-84 315.8 297 54.5
ECA240G3241 Erigeron canadensis HOM05D006471 ORTHO05D008157 1.6e-83 313.9 248 64.9
Zm00001eb061200 Zea mays HOM05D006471 ORTHO05D008157 4.5e-83 312.4 274 57.7
Cc00_g09970 Coffea canephora HOM05D006471 ORTHO05D008157 2.9e-82 309.7 303 55.4
ATR0665G473 Amborella trichopoda HOM05D006471 ORTHO05D008157 1.0e-79 301.2 273 57.1
SGA_v2.0_scaffold580G53041 Striga asiatica HOM05D006471 ORTHO05D004488 2.3e-79 300.1 301 51.8
SGA_v2.0_scaffold42G16129 Striga asiatica HOM05D006471 ORTHO05D008157 1.2e-78 297.7 311 52.4
MELO3C011756.2 Cucumis melo HOM05D006471 ORTHO05D008157 9.7e-78 294.7 366 45.6
arahy.Tifrunner.gnm1.ann1.V4ETXF Arachis hypogaea HOM05D006471 ORTHO05D008157 1.7e-77 293.9 341 48.4
HPP92_017784 Vanilla planifolia HOM05D006471 ORTHO05D008157 6.3e-77 292.0 277 53.4
FAN17G0671 Fragaria x ananassa HOM05D006471 ORTHO05D008157 3.1e-76 289.7 260 56.5
FAN07G1501 Fragaria x ananassa HOM05D002605 ORTHO05D002842 2.9e-74 283.1 242 58.3
SGA_v2.0_scaffold1G00551 Striga asiatica HOM05D006471 ORTHO05D008157 3.2e-73 279.6 237 59.1
MD13G1003200 Malus domestica HOM05D006471 ORTHO05D008157 4.2e-73 279.3 195 69.7
Prupe.1G349200 Prunus persica HOM05D006471 ORTHO05D008157 2.1e-72 276.9 238 59.7
QL08p056974 Quercus lobata HOM05D006471 ORTHO05D008157 5.2e-71 272.3 227 60.4
SEGI_40912 Sequoiadendron giganteum HOM05D006471 ORTHO05D008157 1.4e-68 264.2 270 52.6
Pp3c5_28930 Physcomitrium patens HOM05D006471 ORTHO05D008157 2.0e-67 260.4 289 47.1
Mapoly0019s0104 Marchantia polymorpha HOM05D006471 ORTHO05D008157 1.6e-64 250.8 232 51.7
SMO141G0020 Selaginella moellendorffii HOM05D006471 ORTHO05D008157 3.2e-60 236.5 190 58.9
Pp3c14_5150 Physcomitrium patens HOM05D006471 ORTHO05D008157 1.7e-58 230.7 272 45.2
Carub.0006s2110 Capsella rubella HOM05D006471 ORTHO05D008157 8.9e-55 218.4 129 80.6
Glyma.20G102800 Glycine max HOM05D006471 ORTHO05D008157 8.9e-55 218.4 320 40.9
AagrBONN_evm.TU.Sc2ySwM_362.1554 Anthoceros agrestis HOM05D006471 ORTHO05D008157 3.2e-44 183.3 201 48.8
Sc06g0004050 Simmondsia chinensis HOM05D006471 ORTHO05D008157 3.7e-37 159.8 144 63.9
MCO07G267 Micromonas commoda HOM05D006471 ORTHO05D008157 9.2e-36 155.2 239 41.4
FAN12G2193 Fragaria x ananassa HOM05D006471 ORTHO05D008157 6.8e-31 139.0 131 53.4
QL08p056966 Quercus lobata HOM05D006471 ORTHO05D008157 5.8e-22 109.4 114 51.8
Cre13.g607600 Chlamydomonas reinhardtii HOM05D006471 ORTHO05D008157 2.2e-21 107.5 296 28.7
BolC9t53696H Brassica oleracea HOM05D006471 ORTHO05D008157 8.1e-16 89.0 80 56.2
arahy.Tifrunner.gnm1.ann1.SQAN1F Arachis hypogaea HOM05D006471 ORTHO05D008157 4.6e-11 73.2 52 65.4


User provided reference genes

Program Settings