Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT5G22480 Arabidopsis thaliana HOM05D003643 ORTHO05D005001 8.3e-285 983.0 494 100.0
AL6G33500 Arabidopsis lyrata HOM05D003643 ORTHO05D005001 8.9e-279 963.0 494 97.8
Carub.0006s2022 Capsella rubella HOM05D003643 ORTHO05D005001 4.6e-267 924.1 495 93.9
Thhalv10013358m.g Eutrema salsugineum HOM05D003643 ORTHO05D005001 1.2e-264 916.0 494 92.5
AT5G37340 Arabidopsis thaliana HOM05D003643 ORTHO05D005001 9.8e-262 906.4 494 92.3
BcaB01g04707 Brassica carinata HOM05D003643 ORTHO05D005001 1.7e-261 905.6 489 92.6
A03p10790 Brassica napus HOM05D003643 ORTHO05D005001 6.4e-261 903.7 494 91.3
CARHR191050 Cardamine hirsuta HOM05D003643 ORTHO05D005001 2.4e-260 901.7 490 92.9
Thhalv10027733m.g Eutrema salsugineum HOM05D003643 ORTHO05D005001 1.3e-258 896.0 491 91.2
Sp6g22770 Schrenkiella parvula HOM05D003643 ORTHO05D005001 1.7e-258 895.6 494 91.5
BcaC01g06578 Brassica carinata HOM05D003643 ORTHO05D005001 8.6e-258 893.3 494 90.3
AL7G45920 Arabidopsis lyrata HOM05D003643 ORTHO05D005001 1.1e-257 892.9 494 91.1
BcaC04g19578 Brassica carinata HOM05D003643 ORTHO05D005001 4.3e-257 891.0 497 90.1
BraA03t10388Z Brassica rapa HOM05D003643 ORTHO05D005001 4.3e-257 891.0 505 88.9
C09p54110 Brassica napus HOM05D003643 ORTHO05D005001 7.3e-257 890.2 497 90.1
BolC9t58281H Brassica oleracea HOM05D003643 ORTHO05D005001 7.3e-257 890.2 497 90.1
SpUn0005_0160 Schrenkiella parvula HOM05D003643 ORTHO05D005001 1.5e-254 882.5 493 89.5
BcaB08g36427 Brassica carinata HOM05D003643 ORTHO05D005001 3.4e-254 881.3 506 88.7
A10p18340 Brassica napus HOM05D003643 ORTHO05D005001 5.8e-254 880.6 495 89.5
BolC3t13712H Brassica oleracea HOM05D003643 ORTHO05D005001 1.7e-253 879.0 497 89.1
BraA10t43914Z Brassica rapa HOM05D003643 ORTHO05D005001 2.9e-253 878.2 495 89.3
CARHR215770 Cardamine hirsuta HOM05D003643 ORTHO05D005001 8.4e-253 876.7 494 89.5
BcaC07g37705 Brassica carinata HOM05D003643 ORTHO05D005001 2.6e-246 855.1 491 88.4
A08p10150 Brassica napus HOM05D003643 ORTHO05D005001 5.8e-246 854.0 490 88.4
BraA08t33014Z Brassica rapa HOM05D003643 ORTHO05D005001 1.3e-245 852.8 494 87.9
BcaB04g18097 Brassica carinata HOM05D003643 ORTHO05D005001 8.7e-242 840.1 485 87.4
THA.LOC104822105 Tarenaya hassleriana HOM05D003643 ORTHO05D005001 2.5e-233 812.0 491 83.3
Aa31LG9G17620 Aethionema arabicum HOM05D003643 ORTHO05D005001 4.8e-224 781.2 527 77.8
Atru.chr1.1970 Acer truncatum HOM05D003643 ORTHO05D005001 2.2e-221 772.3 494 78.7
Cpa.g.sc178.8 Carica papaya HOM05D003643 ORTHO05D005001 1.9e-220 769.2 497 77.5
Cfa023544 Carpinus fangiana HOM05D003643 ORTHO05D005001 1.0e-218 763.5 493 77.3
PGR083G1065 Punica granatum HOM05D003643 ORTHO05D005001 3.9e-218 761.5 484 78.3
Psat0s5231g0040 Pisum sativum HOM05D003643 ORTHO05D005001 3.7e-216 755.0 492 76.8
Potri.004G075600 Populus trichocarpa HOM05D003643 ORTHO05D005001 3.7e-216 755.0 496 76.4
Ca_18772_v3 Cicer arietinum L. HOM05D003643 ORTHO05D005001 1.1e-215 753.4 496 75.6
Glyma.20G021900 Glycine max HOM05D003643 ORTHO05D005001 1.1e-215 753.4 495 76.6
TWI77G0757 Tripterygium wilfordii HOM05D003643 ORTHO05D005001 4.1e-215 751.5 490 77.6
Actinidia22386 Actinidia chinensis HOM05D003643 ORTHO05D005001 6.9e-215 750.7 493 75.9
CiPaw.03G114100 Carya illinoinensis HOM05D003643 ORTHO05D005001 6.9e-215 750.7 489 76.1
MD05G1254800 Malus domestica HOM05D003643 ORTHO05D005001 7.6e-214 747.3 491 76.8
Glyma.07G222900 Glycine max HOM05D003643 ORTHO05D005001 2.9e-213 745.3 494 75.5
Psat6g043080 Pisum sativum HOM05D003643 ORTHO05D005001 5.0e-213 744.6 492 76.2
Dinv35809 Davidia involucrata HOM05D003643 ORTHO05D005001 6.5e-213 744.2 496 74.8
Lj1C1143T1 Lonicera japonica HOM05D003643 ORTHO05D005001 2.5e-212 742.3 488 74.6
MD10G1234900 Malus domestica HOM05D003643 ORTHO05D005001 2.5e-212 742.3 485 76.9
CSS0044821 Camellia sinensis var. sinensis HOM05D003643 ORTHO05D005001 9.3e-212 740.3 491 74.9
CANSAT21G2447 Cannabis sativa HOM05D003643 ORTHO05D005001 4.6e-211 738.0 494 74.5
Eucgr.D01040 Eucalyptus grandis HOM05D003643 ORTHO05D005001 6.1e-211 737.6 488 75.4
Prupe.4G109100 Prunus persica HOM05D003643 ORTHO05D005001 6.1e-211 737.6 489 75.5
GSVIVG01012096001 Vitis vinifera HOM05D003643 ORTHO05D005001 6.1e-211 737.6 489 75.1
FvH4_3g12070 Fragaria vesca HOM05D003643 ORTHO05D005001 1.8e-210 736.1 490 75.3
Lj1g0022937 Lotus japonicus HOM05D003643 ORTHO05D005001 2.3e-210 735.7 496 73.4
Lj1g0023184 Lotus japonicus HOM05D003643 ORTHO05D005001 2.3e-210 735.7 496 73.6
Phvul.L009001 Phaseolus vulgaris HOM05D003643 ORTHO05D005001 5.1e-210 734.6 493 74.4
Sabra04G0050300 Salix brachista HOM05D003643 ORTHO05D005001 5.1e-210 734.6 496 75.4
FAN21G1938 Fragaria x ananassa HOM05D003643 ORTHO05D005001 8.7e-210 733.8 490 74.7
VMungo0251G0454 Vigna mungo HOM05D003643 ORTHO05D005001 1.1e-209 733.4 494 74.5
Phvul.L001601 Phaseolus vulgaris HOM05D003643 ORTHO05D005001 1.5e-209 733.0 493 74.2
RcHm_v2.0_Chr5g0019781 Rosa chinensis HOM05D003643 ORTHO05D005001 1.5e-209 733.0 492 75.0
CsaV3_1G046560 Cucumis sativus L. HOM05D003643 ORTHO05D005001 3.3e-209 731.9 485 75.3
FAN25G0143 Fragaria x ananassa HOM05D003643 ORTHO05D005001 3.3e-209 731.9 490 74.9
TPR.G20995 Trifolium pratense HOM05D003643 ORTHO05D005001 4.3e-209 731.5 491 73.7
Medtr4g083780 Medicago truncatula HOM05D003643 ORTHO05D005001 9.7e-209 730.3 487 73.9
PGSC0003DMG400010363 Solanum tuberosum HOM05D003643 ORTHO05D005001 1.3e-208 729.9 490 74.7
CAN.G1222.6 Capsicum annuum HOM05D003643 ORTHO05D005001 2.2e-208 729.2 492 75.0
Solyc02g069120.3 Solanum lycopersicum HOM05D003643 ORTHO05D005001 2.8e-208 728.8 490 74.1
Phvul.003G000252 Phaseolus vulgaris HOM05D003643 ORTHO05D005001 3.7e-208 728.4 493 74.2
Sopen02g018250 Solanum pennellii HOM05D003643 ORTHO05D005001 3.7e-208 728.4 490 74.1
Nitab4.5_0002056g0030 Nicotiana tabacum HOM05D003643 ORTHO05D005001 8.2e-208 727.2 497 73.2
Thecc.04G162500 Theobroma cacao HOM05D003643 ORTHO05D005001 1.4e-207 726.5 492 75.6
Cc09_g06330 Coffea canephora HOM05D003643 ORTHO05D005001 6.9e-207 724.2 492 73.6
HanXRQChr07g0189641 Helianthus annuus HOM05D003643 ORTHO05D005001 9.1e-207 723.8 478 75.9
Lalb_Chr16g0385301 Lupinus albus HOM05D003643 ORTHO05D005001 4.5e-206 721.5 495 73.3
Gohir.D10G121400 Gossypium hirsutum HOM05D003643 ORTHO05D005001 1.7e-205 719.5 491 74.5
Gorai.011G133500 Gossypium raimondii HOM05D003643 ORTHO05D005001 1.7e-205 719.5 491 74.5
MELO3C021772.2 Cucumis melo HOM05D003643 ORTHO05D005001 5.0e-205 718.0 485 74.4
Sed0017297 Sechium edule HOM05D003643 ORTHO05D005001 6.5e-205 717.6 481 74.8
Sc22g0000430 Simmondsia chinensis HOM05D003643 ORTHO05D005001 6.5e-205 717.6 492 73.2
vmacro11251 Vaccinium macrocarpon HOM05D003643 ORTHO05D005001 6.5e-205 717.6 509 71.3
TAR365G0076 Trochodendron aralioides HOM05D003643 ORTHO05D005001 8.5e-205 717.2 482 73.2
Migut.M01969 Erythranthe guttata HOM05D003643 ORTHO05D005001 1.4e-204 716.5 479 74.9
Lsat_1_v5_gn_5_36401 Lactuca sativa HOM05D003643 ORTHO05D005001 7.2e-204 714.1 478 74.5
Oeu060347.1 Olea europaea HOM05D003643 ORTHO05D005001 7.2e-204 714.1 480 73.5
Duzib268G1178 Durio zibethinus HOM05D003643 ORTHO05D005001 1.2e-203 713.4 495 74.1
SGA_v2.0_scaffold298G47674 Striga asiatica HOM05D003643 ORTHO05D005001 1.4e-202 709.9 494 72.1
HanXRQChr14g0433091 Helianthus annuus HOM05D003643 ORTHO05D005001 3.3e-201 705.3 480 72.7
ECA238G3555 Erigeron canadensis HOM05D003643 ORTHO05D005001 7.4e-201 704.1 482 72.8
arahy.Tifrunner.gnm1.ann1.PVMC8E Arachis hypogaea HOM05D003643 ORTHO05D005001 3.7e-200 701.8 494 71.7
FAN16G1159 Fragaria x ananassa HOM05D003643 ORTHO05D005001 1.8e-199 699.5 490 72.4
SalBow8G4557 Salvia bowleyana HOM05D003643 ORTHO05D005001 1.5e-198 696.4 483 72.7
SalBow8G5428 Salvia bowleyana HOM05D003643 ORTHO05D005001 1.5e-198 696.4 483 72.7
COL.COLO4_08070 Corchorus olitorius HOM05D003643 ORTHO05D005001 3.4e-198 695.3 528 68.9
AUR62010551 Chenopodium quinoa HOM05D003643 ORTHO05D005001 1.0e-197 693.7 490 70.0
DCAR_007797 Daucus carota HOM05D003643 ORTHO05D005001 4.2e-196 688.3 495 69.9
ECA246G0187 Erigeron canadensis HOM05D003643 ORTHO05D005001 7.2e-196 687.6 486 71.6
Rhsim04G0157300 Rhododendron simsii HOM05D003643 ORTHO05D005001 1.8e-194 682.9 530 67.9
Lj1g0023481 Lotus japonicus HOM05D003643 ORTHO05D005001 6.7e-194 681.0 496 69.2
unitig_32.g11672 Utricularia gibba HOM05D003643 ORTHO05D005001 5.7e-193 677.9 483 70.4
Nn7g37591 Nelumbo nucifera HOM05D003643 ORTHO05D005001 5.9e-190 667.9 494 67.8
Hund14697 Selenicereus undatus HOM05D003643 ORTHO05D005001 3.8e-189 665.2 499 66.9
arahy.Tifrunner.gnm1.ann1.EU78CH Arachis hypogaea HOM05D003643 ORTHO05D005001 2.7e-187 659.1 494 69.0
CDE02G0779 Ceratophyllum demersum HOM05D003643 ORTHO05D005001 6.1e-187 657.9 486 67.5
Oeu052674.3 Olea europaea HOM05D003643 ORTHO05D005001 4.0e-186 655.2 452 71.9
ATR0743G136 Amborella trichopoda HOM05D003643 ORTHO05D005001 3.3e-185 652.1 489 67.5
Zm00001eb058120 Zea mays HOM05D003643 ORTHO05D005001 7.5e-185 651.0 487 66.3
Hund01937 Selenicereus undatus HOM05D003643 ORTHO05D005001 3.7e-184 648.7 486 66.3
AUR62017342 Chenopodium quinoa HOM05D003643 ORTHO05D005001 4.8e-184 648.3 583 58.7
PSO675G9021 Papaver somniferum HOM05D003643 ORTHO05D005001 1.1e-183 647.1 487 67.1
SGA_v2.0_scaffold95G28766 Striga asiatica HOM05D003643 ORTHO05D005001 1.1e-183 647.1 517 64.8
Os08g0471900 Oryza sativa ssp. japonica HOM05D003643 ORTHO05D005001 1.6e-182 643.3 488 65.4
EL10Ac5g12673 Beta vulgaris HOM05D003643 ORTHO05D005001 4.5e-182 641.7 570 60.4
Manes.01G122000 Manihot esculenta HOM05D003643 ORTHO05D005001 2.2e-181 639.4 496 68.5
MBI07_g18519_MAGBIO Magnolia biondii HOM05D003643 ORTHO05D005001 3.2e-180 635.6 493 66.9
TPR.G20778 Trifolium pratense HOM05D003643 ORTHO05D005001 2.1e-179 632.9 485 66.6
Mapoly0085s0072 Marchantia polymorpha HOM05D003643 ORTHO05D005001 2.3e-178 629.4 497 62.2
HPP92_015903 Vanilla planifolia HOM05D003643 ORTHO05D005001 3.0e-178 629.0 482 65.4
Peaxi162Scf00128g01142 Petunia axillaris HOM05D003643 ORTHO05D005001 9.8e-177 624.0 490 67.3
Aqoxy5G01635 Aquilegia oxysepala HOM05D003643 ORTHO05D005001 8.3e-176 620.9 486 64.2
Nitab4.5_0002463g0030 Nicotiana tabacum HOM05D003643 ORTHO05D005001 8.3e-176 620.9 497 66.2
Pp3c15_5070 Physcomitrium patens HOM05D003643 ORTHO05D005001 3.1e-175 619.0 498 61.0
TPR.G9485 Trifolium pratense HOM05D003643 ORTHO05D005001 5.4e-175 618.2 474 66.2
Lsat_1_v5_gn_2_29841 Lactuca sativa HOM05D003643 ORTHO05D005001 1.6e-174 616.7 481 65.7
Ca_20206_v3 Cicer arietinum L. HOM05D003643 ORTHO05D005001 3.6e-171 605.5 488 63.7
CSS0005005 Camellia sinensis var. sinensis HOM05D003643 ORTHO05D005001 4.0e-170 602.1 401 74.6
BolC8t48076H Brassica oleracea HOM05D003643 ORTHO05D005001 2.0e-166 589.7 362 84.5
Nitab4.5_0004569g0010 Nicotiana tabacum HOM05D003643 ORTHO05D005001 1.5e-164 583.6 504 63.1
CBR_g6566 Chara braunii HOM05D003643 ORTHO05D005001 2.0e-161 573.2 503 58.3
Ciclev10003667m.g Citrus clementina HOM05D003643 ORTHO05D005001 6.0e-158 561.6 378 75.4
CBR_g34896 Chara braunii HOM05D003643 ORTHO05D005001 1.1e-156 557.4 494 58.1
SMO203G0021 Selaginella moellendorffii HOM05D003643 ORTHO05D005001 1.2e-155 553.9 450 61.1
C03p12370 Brassica napus HOM05D003643 ORTHO05D005001 1.1e-151 540.8 372 75.5
PSO017G1140 Papaver somniferum HOM05D003643 ORTHO05D005001 1.1e-148 530.8 395 68.1
QL07p008150 Quercus lobata HOM05D003643 ORTHO05D005001 7.3e-148 528.1 549 54.5
Phvul.002G099300 Phaseolus vulgaris HOM05D003643 ORTHO05D005001 6.2e-147 525.0 394 69.3
ClCG01G009340 Citrullus lanatus HOM05D003643 ORTHO05D005001 1.5e-145 520.4 357 73.9
Phvul.003G000226 Phaseolus vulgaris HOM05D003643 ORTHO05D005001 5.8e-145 518.5 345 75.7
Gohir.1Z049309 Gossypium hirsutum HOM05D003643 ORTHO05D005001 1.9e-143 513.5 355 73.8
Ah.12g057940 Amaranthus hybridus HOM05D003643 ORTHO05D005001 2.4e-138 496.5 393 66.7
Peaxi162Scf00149g01022 Petunia axillaris HOM05D003643 ORTHO05D005001 1.2e-129 467.6 357 68.3
CBR_g6568 Chara braunii HOM05D003643 ORTHO05D005001 4.2e-127 459.1 471 52.2
Gohir.1Z049318 Gossypium hirsutum HOM05D003643 ORTHO05D005001 1.9e-119 433.7 303 73.3
Phvul.L001739 Phaseolus vulgaris HOM05D003643 ORTHO05D005001 1.3e-117 427.6 402 58.2
Haze_13620 Corylus avellana HOM05D003643 ORTHO05D005001 2.6e-113 413.3 275 76.0
Phvul.003G000304 Phaseolus vulgaris HOM05D003643 ORTHO05D005001 2.9e-112 409.8 280 72.1
Phvul.003G000330 Phaseolus vulgaris HOM05D003643 ORTHO05D005001 1.4e-111 407.5 272 74.6
Actinidia36045 Actinidia chinensis HOM05D003643 ORTHO05D005001 2.6e-89 333.6 233 72.5
Cfa025656 Carpinus fangiana HOM05D003643 ORTHO05D005001 1.7e-88 330.9 463 41.0
Atru.chr3.103 Acer truncatum HOM05D003643 ORTHO05D005001 6.5e-80 302.4 247 66.8
Phvul.003G000278 Phaseolus vulgaris HOM05D003643 ORTHO05D005001 2.7e-78 297.0 189 78.3
Phvul.L008901 Phaseolus vulgaris HOM05D003643 ORTHO05D005001 1.2e-73 281.6 181 74.6
DCAR_017792 Daucus carota HOM05D003643 ORTHO05D005001 7.7e-73 278.9 204 70.1
BolC8t48075H Brassica oleracea HOM05D003643 ORTHO05D018815 5.3e-66 256.1 138 91.3
SEGI_34727 Sequoiadendron giganteum HOM05D003643 ORTHO05D005001 2.0e-60 237.7 200 60.5
Psat3g171960 Pisum sativum HOM05D003643 ORTHO05D005001 8.0e-54 215.7 228 52.6
Psat6g162200 Pisum sativum HOM05D003643 ORTHO05D005001 5.7e-52 209.5 253 47.4
Lsat_1_v5_gn_5_36361 Lactuca sativa HOM05D003643 ORTHO05D018815 7.5e-52 209.1 144 72.2
Atru.chr8.2585 Acer truncatum HOM05D003643 ORTHO05D005001 4.9e-51 206.5 153 70.6
ClCG01G009350 Citrullus lanatus HOM05D003643 ORTHO05D005001 4.1e-50 203.4 126 78.6
Peaxi162Scf00149g01017 Petunia axillaris HOM05D003643 ORTHO05D018815 4.7e-46 189.9 134 70.1
Atru.chr8.2696 Acer truncatum HOM05D003643 ORTHO05D005001 8.9e-45 185.7 265 46.8
CSS0009011 Camellia sinensis var. sinensis HOM05D003643 ORTHO05D005001 2.3e-40 171.0 114 71.1
ATR0712G001 Amborella trichopoda HOM05D003643 ORTHO05D023464 1.5e-39 168.3 143 62.2
CSS0015856 Camellia sinensis var. sinensis HOM05D003643 ORTHO05D005001 5.8e-36 156.4 114 67.5
Phvul.L001639 Phaseolus vulgaris HOM05D003643 ORTHO05D034905 7.5e-36 156.0 95 75.8
Phvul.L008801 Phaseolus vulgaris HOM05D003643 ORTHO05D034905 7.5e-36 156.0 95 75.8
CBR_g12037 Chara braunii HOM05D003643 ORTHO05D005001 3.2e-34 150.6 163 48.5
Haze_13621 Corylus avellana HOM05D003643 ORTHO05D018815 1.6e-25 121.7 69 84.1
ClCG01G009330 Citrullus lanatus HOM05D003643 ORTHO05D018815 2.3e-24 117.9 63 88.9
Gohir.A10G145401 Gossypium hirsutum HOM05D003643 ORTHO05D018815 6.6e-24 116.3 64 87.5
CSS0023685 Camellia sinensis var. sinensis HOM05D003643 ORTHO05D018815 1.2e-22 112.1 72 73.6
Lsat_1_v5_gn_5_135000 Lactuca sativa HOM05D003643 ORTHO05D005001 2.8e-22 110.9 91 65.9
CSS0030804 Camellia sinensis var. sinensis HOM05D003643 ORTHO05D023464 2.4e-21 107.8 65 83.1
Cc11_g00920 Coffea canephora HOM05D003643 ORTHO05D005001 1.5e-20 105.1 67 74.6
CSS0024414 Camellia sinensis var. sinensis HOM05D003643 ORTHO05D023464 2.0e-20 104.8 65 80.0
Haze_13619 Corylus avellana HOM05D003643 ORTHO05D034905 4.4e-20 103.6 106 55.7
CSS0049868 Camellia sinensis var. sinensis HOM05D003643 ORTHO05D023464 5.8e-20 103.2 65 78.5
Psat0s3903g0040 Pisum sativum HOM05D003643 ORTHO05D005001 4.9e-19 100.1 65 81.5
CSS0012788 Camellia sinensis var. sinensis HOM05D003643 ORTHO05D023464 1.6e-17 95.1 77 67.5
Lsat_1_v5_gn_5_54460 Lactuca sativa HOM05D003643 ORTHO05D005001 4.3e-15 87.0 181 34.8
CSS0032340 Camellia sinensis var. sinensis HOM05D003643 ORTHO05D018815 1.5e-12 78.6 48 68.8
HanXRQChr06g0180401 Helianthus annuus HOM05D003643 ORTHO05D005001 9.3e-10 69.3 38 78.9
BcaC03g13887 Brassica carinata HOM05D003643 ORTHO05D032482 1.9e-07 61.6 36 80.6
C02p10890 Brassica napus HOM05D003643 ORTHO05D032482 7.3e-07 59.7 35 80.0
BolC2t07159H Brassica oleracea HOM05D003643 ORTHO05D032482 7.3e-07 59.7 35 80.0
RcHm_v2.0_Chr5g0019801 Rosa chinensis HOM05D003643 ORTHO05D005001 2.8e-06 57.8 48 70.8


User provided reference genes

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