Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT5G22430 Arabidopsis thaliana HOM05D005110 ORTHO05D006074 7.6e-92 340.5 173 100.0
AL6G33450 Arabidopsis lyrata HOM05D005110 ORTHO05D006074 3.3e-87 325.1 173 94.2
Carub.0006s2017 Capsella rubella HOM05D005110 ORTHO05D006074 2.9e-83 312.0 173 88.4
BraA02t05659Z Brassica rapa HOM05D005110 ORTHO05D006074 3.3e-79 298.5 173 83.8
BNapus_Darmor_BZH_scaffold_38p00660 Brassica napus HOM05D005110 ORTHO05D006074 2.1e-78 295.8 173 82.1
BolC2t07157H Brassica oleracea HOM05D005110 ORTHO05D006074 1.1e-77 293.5 173 82.1
C02p10870 Brassica napus HOM05D005110 ORTHO05D006074 5.3e-77 291.2 173 82.1
Sp6g22820 Schrenkiella parvula HOM05D005110 ORTHO05D006074 2.6e-76 288.9 173 80.3
Thhalv10014830m.g Eutrema salsugineum HOM05D005110 ORTHO05D006074 1.3e-75 286.6 173 80.3
BcaB08g36432 Brassica carinata HOM05D000477 ORTHO05D006074 1.1e-74 283.5 171 80.1
BcaB05g22726 Brassica carinata HOM05D005110 ORTHO05D006074 1.6e-73 279.6 173 79.8
CARHR191100 Cardamine hirsuta HOM05D005110 ORTHO05D006074 5.1e-72 274.6 173 79.2
Aa31LG1G13130 Aethionema arabicum HOM05D005110 ORTHO05D006074 4.9e-67 258.1 173 74.6
BcaC03g13883 Brassica carinata HOM05D005110 ORTHO05D006074 1.6e-65 253.1 154 79.9
THA.LOC104810920 Tarenaya hassleriana HOM05D005110 ORTHO05D006074 1.5e-47 193.4 174 59.2
C09p54160 Brassica napus HOM05D005110 ORTHO05D006074 1.6e-46 189.9 173 59.0
BolC9t58287H Brassica oleracea HOM05D005110 ORTHO05D006074 4.8e-46 188.3 173 58.4
Thecc.09G280200 Theobroma cacao HOM05D005110 ORTHO05D006074 6.5e-35 151.4 172 53.5
MD11G1167600 Malus domestica HOM05D005110 ORTHO05D006074 7.2e-34 147.9 169 49.1
GSVIVG01036094001 Vitis vinifera HOM05D005110 ORTHO05D006074 1.6e-33 146.7 174 47.7
MD03G1148100 Malus domestica HOM05D005110 ORTHO05D006074 3.6e-33 145.6 169 48.5
Prupe.6G134300 Prunus persica HOM05D005110 ORTHO05D006074 3.6e-33 145.6 166 47.6
Psat7g142160 Pisum sativum HOM05D005110 ORTHO05D006074 4.7e-33 145.2 163 46.0
Duzib168G1438 Durio zibethinus HOM05D005110 ORTHO05D006074 1.8e-32 143.3 174 48.9
FvH4_3g25370 Fragaria vesca HOM05D005110 ORTHO05D006074 2.3e-32 142.9 169 47.9
FAN21G3897 Fragaria x ananassa HOM05D005110 ORTHO05D006074 2.3e-32 142.9 169 47.9
Duzib150G1383 Durio zibethinus HOM05D005110 ORTHO05D006074 3.9e-32 142.1 170 50.0
Lj3g0016581 Lotus japonicus HOM05D005110 ORTHO05D006074 6.7e-32 141.4 167 48.5
Dinv42535 Davidia involucrata HOM05D005110 ORTHO05D006074 8.8e-32 141.0 169 48.5
FAN11G1413 Fragaria x ananassa HOM05D005110 ORTHO05D006074 1.1e-31 140.6 169 47.3
FAN25G3715 Fragaria x ananassa HOM05D005110 ORTHO05D006074 1.1e-31 140.6 169 47.3
Dinv22825 Davidia involucrata HOM05D005110 ORTHO05D006074 1.5e-31 140.2 169 48.5
Duzib170G1118 Durio zibethinus HOM05D005110 ORTHO05D006074 2.0e-31 139.8 173 48.0
Lalb_Chr01g0004911 Lupinus albus HOM05D005110 ORTHO05D006074 1.3e-30 137.1 165 46.1
TPR.G17227 Trifolium pratense HOM05D005110 ORTHO05D006074 1.3e-30 137.1 163 46.0
COL.COLO4_34021 Corchorus olitorius HOM05D005110 ORTHO05D006074 4.8e-30 135.2 172 47.1
DCAR_012208 Daucus carota HOM05D005110 ORTHO05D006074 6.3e-30 134.8 178 44.9
Gohir.D05G082600 Gossypium hirsutum HOM05D005110 ORTHO05D006074 6.3e-30 134.8 173 47.4
Gorai.009G084200 Gossypium raimondii HOM05D005110 ORTHO05D006074 6.3e-30 134.8 173 47.4
Gohir.A05G079700 Gossypium hirsutum HOM05D005110 ORTHO05D006074 1.4e-29 133.7 171 47.4
QL01p011978 Quercus lobata HOM05D005110 ORTHO05D006074 1.8e-29 133.3 171 46.2
TWI79G0870 Tripterygium wilfordii HOM05D005110 ORTHO05D006074 1.8e-29 133.3 164 45.1
Glyma.11G182100 Glycine max HOM05D005110 ORTHO05D006074 2.4e-29 132.9 167 46.1
Cpa.g.sc195.13 Carica papaya HOM05D005110 ORTHO05D006074 3.1e-29 132.5 175 45.7
Psat5g259000 Pisum sativum HOM05D005110 ORTHO05D006074 3.1e-29 132.5 165 46.1
Cfa009996 Carpinus fangiana HOM05D005110 ORTHO05D006074 4.1e-29 132.1 170 45.9
Glyma.12G091100 Glycine max HOM05D005110 ORTHO05D006074 4.1e-29 132.1 165 44.8
PGR102G3267 Punica granatum HOM05D005110 ORTHO05D006074 4.1e-29 132.1 175 46.9
VMungo1127G0906 Vigna mungo HOM05D005110 ORTHO05D006074 4.1e-29 132.1 171 44.4
Ciclev10029378m.g Citrus clementina HOM05D005110 ORTHO05D006074 5.3e-29 131.7 170 47.1
Lalb_Chr03g0028181 Lupinus albus HOM05D005110 ORTHO05D006074 7.0e-29 131.3 168 44.6
QL01p011992 Quercus lobata HOM05D005110 ORTHO05D006074 7.0e-29 131.3 169 46.2
Hund18768 Selenicereus undatus HOM05D005110 ORTHO05D006074 1.2e-28 130.6 162 46.3
Nn2g14215 Nelumbo nucifera HOM05D005110 ORTHO05D006074 1.5e-28 130.2 174 46.0
Lj3g0002892 Lotus japonicus HOM05D005110 ORTHO05D006074 2.0e-28 129.8 165 44.8
Potri.009G019300 Populus trichocarpa HOM05D005110 ORTHO05D006074 2.6e-28 129.4 166 45.2
Medtr2g086680 Medicago truncatula HOM05D005110 ORTHO05D006074 3.5e-28 129.0 169 46.7
Hma1.2p1_0587F.1_g184070 Hydrangea macrophylla HOM05D005110 ORTHO05D006074 7.7e-28 127.9 171 43.3
Atru.chr3.3190 Acer truncatum HOM05D005110 ORTHO05D006074 1.3e-27 127.1 172 44.2
DCAR_010338 Daucus carota HOM05D005110 ORTHO05D006074 1.3e-27 127.1 172 45.9
Eucgr.B03836 Eucalyptus grandis HOM05D005110 ORTHO05D006074 2.2e-27 126.3 196 39.8
Rhsim01G0204600 Rhododendron simsii HOM05D005110 ORTHO05D006074 2.2e-27 126.3 176 44.9
Sabra09G0012800 Salix brachista HOM05D005110 ORTHO05D006074 2.9e-27 125.9 171 43.3
arahy.Tifrunner.gnm1.ann1.XFIF97 Arachis hypogaea HOM05D005110 ORTHO05D006074 6.5e-27 124.8 170 43.5
Manes.11G163300 Manihot esculenta HOM05D005110 ORTHO05D006074 8.5e-27 124.4 172 42.4
VMungo1080G1295 Vigna mungo HOM05D005110 ORTHO05D006074 8.5e-27 124.4 153 47.1
CSS0022586 Camellia sinensis var. sinensis HOM05D005110 ORTHO05D006074 1.1e-26 124.0 170 44.1
Glyma.13G315400 Glycine max HOM05D005110 ORTHO05D006074 1.1e-26 124.0 167 46.1
Phvul.005G122600 Phaseolus vulgaris HOM05D005110 ORTHO05D006074 1.5e-26 123.6 167 44.3
Phvul.011G095400 Phaseolus vulgaris HOM05D005110 ORTHO05D006074 1.5e-26 123.6 163 44.8
Actinidia37076 Actinidia chinensis HOM05D005110 ORTHO05D006074 1.9e-26 123.2 177 42.9
TWI31G0848 Tripterygium wilfordii HOM05D005110 ORTHO05D006074 1.9e-26 123.2 176 42.6
vmacro14345 Vaccinium macrocarpon HOM05D005110 ORTHO05D006074 3.2e-26 122.5 188 39.4
arahy.Tifrunner.gnm1.ann1.EYNG7S Arachis hypogaea HOM05D005110 ORTHO05D006074 4.2e-26 122.1 170 42.9
Oeu035569.1 Olea europaea HOM05D005110 ORTHO05D006074 5.5e-26 121.7 171 43.3
Lalb_Chr19g0136401 Lupinus albus HOM05D005110 ORTHO05D006074 1.2e-25 120.6 169 42.6
CiPaw.13G134200 Carya illinoinensis HOM05D005110 ORTHO05D006074 1.6e-25 120.2 179 45.3
Rhsim13G0112900 Rhododendron simsii HOM05D005110 ORTHO05D006074 2.1e-25 119.8 180 42.2
Solyc06g074260.4 Solanum lycopersicum HOM05D005110 ORTHO05D006074 3.6e-25 119.0 168 41.1
THA.LOC104800521 Tarenaya hassleriana HOM05D005110 ORTHO05D006074 3.6e-25 119.0 172 41.9
Aqoxy4G02728 Aquilegia oxysepala HOM05D005110 ORTHO05D006074 6.1e-25 118.2 172 43.6
CSS0002660 Camellia sinensis var. sinensis HOM05D005110 ORTHO05D006074 1.0e-24 117.5 163 41.1
CANSAT54G0919 Cannabis sativa HOM05D005110 ORTHO05D006074 1.0e-24 117.5 169 42.0
Oeu002365.1 Olea europaea HOM05D005110 ORTHO05D006074 1.0e-24 117.5 177 42.9
Sopen06g030680 Solanum pennellii HOM05D005110 ORTHO05D006074 1.0e-24 117.5 168 40.5
MBI17_g32417_MAGBIO Magnolia biondii HOM05D005110 ORTHO05D006074 3.0e-24 115.9 184 39.7
ECA248G3565 Erigeron canadensis HOM05D005110 ORTHO05D006074 4.0e-24 115.5 183 39.3
PGSC0003DMG400005884 Solanum tuberosum HOM05D005110 ORTHO05D006074 5.2e-24 115.2 168 39.9
TAR623G0362 Trochodendron aralioides HOM05D005110 ORTHO05D006074 5.2e-24 115.2 135 47.4
CiPaw.14G098700 Carya illinoinensis HOM05D005110 ORTHO05D006074 6.7e-24 114.8 171 44.4
vmacro03324 Vaccinium macrocarpon HOM05D005110 ORTHO05D006074 1.1e-23 114.0 178 40.4
Actinidia25117 Actinidia chinensis HOM05D005110 ORTHO05D006074 1.5e-23 113.6 180 42.2
Sc06g0008710 Simmondsia chinensis HOM05D005110 ORTHO05D006074 1.5e-23 113.6 172 40.7
MSTRG.21034 Avicennia marina HOM05D005110 ORTHO05D006074 3.3e-23 112.5 178 40.4
HanXRQChr01g0024471 Helianthus annuus HOM05D005110 ORTHO05D006074 3.3e-23 112.5 172 38.4
BraA07t29533Z Brassica rapa HOM05D005110 ORTHO05D006074 5.7e-23 111.7 174 41.4
Thhalv10002110m.g Eutrema salsugineum HOM05D005110 ORTHO05D006074 5.7e-23 111.7 174 40.8
CAN.G919.35 Capsicum annuum HOM05D005110 ORTHO05D006074 7.5e-23 111.3 170 39.4
CsaV3_1G014930 Cucumis sativus L. HOM05D005110 ORTHO05D006074 7.5e-23 111.3 172 40.7
CARHR119990 Cardamine hirsuta HOM05D005110 ORTHO05D006074 1.3e-22 110.5 174 43.7
Sed0010097 Sechium edule HOM05D005110 ORTHO05D006074 1.7e-22 110.2 183 38.8
Carub.0004s0802 Capsella rubella HOM05D005110 ORTHO05D006074 2.2e-22 109.8 165 42.4
Cc01_g08910 Coffea canephora HOM05D005110 ORTHO05D006074 2.8e-22 109.4 177 39.5
A07p18150 Brassica napus HOM05D005110 ORTHO05D006074 3.7e-22 109.0 174 40.8
Oeu027156.1 Olea europaea HOM05D005110 ORTHO05D006074 3.7e-22 109.0 178 41.0
CsaV3_1G015850 Cucumis sativus L. HOM05D005110 ORTHO05D006074 4.8e-22 108.6 167 38.9
HanXRQChr13g0426031 Helianthus annuus HOM05D005110 ORTHO05D006074 4.8e-22 108.6 183 37.7
arahy.Tifrunner.gnm1.ann1.NUG06Z Arachis hypogaea HOM05D005110 ORTHO05D006074 6.3e-22 108.2 181 41.4
ClCG01G012070 Citrullus lanatus HOM05D005110 ORTHO05D006074 6.3e-22 108.2 175 37.7
Migut.D02434 Erythranthe guttata HOM05D005110 ORTHO05D006074 8.2e-22 107.8 184 37.0
SalBow6G3038 Salvia bowleyana HOM05D005110 ORTHO05D006074 1.1e-21 107.5 179 39.1
BcaB02g10088 Brassica carinata HOM05D005110 ORTHO05D006074 1.4e-21 107.1 174 40.2
MSTRG.18766 Avicennia marina HOM05D005110 ORTHO05D006074 1.8e-21 106.7 178 39.3
Peaxi162Scf00091g00622 Petunia axillaris HOM05D005110 ORTHO05D006074 1.8e-21 106.7 181 37.6
Sp4g10180 Schrenkiella parvula HOM05D005110 ORTHO05D006074 1.8e-21 106.7 174 39.7
arahy.Tifrunner.gnm1.ann1.GADS7N Arachis hypogaea HOM05D005110 ORTHO05D006074 3.1e-21 105.9 178 40.4
Nitab4.5_0005472g0010 Nicotiana tabacum HOM05D005110 ORTHO05D006074 3.1e-21 105.9 168 38.7
AL4G21340 Arabidopsis lyrata HOM05D005110 ORTHO05D006074 4.1e-21 105.5 174 42.5
C04p24220 Brassica napus HOM05D005110 ORTHO05D006074 7.0e-21 104.8 174 39.7
BolC4t23920H Brassica oleracea HOM05D005110 ORTHO05D006074 7.0e-21 104.8 174 39.7
CsaV3_6G038400 Cucumis sativus L. HOM05D005110 ORTHO05D006074 1.6e-20 103.6 187 39.6
A10p18400 Brassica napus HOM05D005110 ORTHO05D006074 2.0e-20 103.2 66 80.3
MELO3C004693.2 Cucumis melo HOM05D005110 ORTHO05D006074 2.0e-20 103.2 176 38.6
Lsat_1_v5_gn_1_59041 Lactuca sativa HOM05D005110 ORTHO05D006074 2.6e-20 102.8 169 38.5
AT2G27385 Arabidopsis thaliana HOM05D005110 ORTHO05D006074 3.5e-20 102.4 174 42.5
SGA_v2.0_scaffold22G09852 Striga asiatica HOM05D005110 ORTHO05D006074 4.5e-20 102.1 177 36.7
BcaC02g10869 Brassica carinata HOM05D005110 ORTHO05D006074 1.7e-19 100.1 174 38.5
MELO3C014504.2 Cucumis melo HOM05D005110 ORTHO05D006074 1.7e-19 100.1 159 39.6
Nitab4.5_0000937g0070 Nicotiana tabacum HOM05D005110 ORTHO05D006074 1.7e-19 100.1 166 39.2
ClCG02G022270 Citrullus lanatus HOM05D005110 ORTHO05D006074 5.0e-19 98.6 190 38.9
Hund20930 Selenicereus undatus HOM05D005110 ORTHO05D006074 1.5e-18 97.1 132 46.2
QL01p011973 Quercus lobata HOM05D005110 ORTHO05D006074 3.6e-17 92.4 169 40.2
Manes.04G002101 Manihot esculenta HOM05D005110 ORTHO05D006074 6.1e-17 91.7 106 42.5
MSTRG.17701 Avicennia marina HOM05D005110 ORTHO05D006074 1.2e-15 87.4 172 36.6
Lj2P968T16 Lonicera japonica HOM05D005110 ORTHO05D006074 1.2e-15 87.4 119 41.2
TAR369G1010 Trochodendron aralioides HOM05D005110 ORTHO05D006074 2.0e-15 86.7 125 43.2
Haze_23356 Corylus avellana HOM05D005110 ORTHO05D006074 1.4e-13 80.5 91 49.5
BraA10t43921Z Brassica rapa HOM05D005110 ORTHO05D006074 5.9e-12 75.1 52 78.8
HPP92_005471 Vanilla planifolia HOM05D005110 ORTHO05D006074 5.9e-12 75.1 205 31.7
unitig_746.g26607 Utricularia gibba HOM05D005110 ORTHO05D006074 2.2e-11 73.2 171 32.2
vmacro14354 Vaccinium macrocarpon HOM05D005110 ORTHO05D006074 2.2e-11 73.2 108 38.0
HPP92_011908 Vanilla planifolia HOM05D005110 ORTHO05D006074 7.2e-10 68.2 119 36.1
Actinidia35470 Actinidia chinensis HOM05D005110 ORTHO05D006074 1.2e-09 67.4 110 38.2
TPR.G4458 Trifolium pratense HOM05D005110 ORTHO05D006074 6.8e-08 61.6 59 50.8
Os02g0535300 Oryza sativa ssp. japonica HOM05D005110 ORTHO05D006074 3.4e-07 59.3 173 32.4
Zm00001eb242880 Zea mays HOM05D005110 ORTHO05D006074 8.3e-06 54.7 208 27.4


User provided reference genes

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