Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT5G22320 Arabidopsis thaliana HOM05D012474 ORTHO05D008520 1.1e-89 334.7 453 100.0
AL6G33340 Arabidopsis lyrata HOM05D012474 ORTHO05D008520 8.1e-77 292.0 455 89.2
Carub.0006s2006 Capsella rubella HOM05D012474 ORTHO05D008520 1.7e-71 274.2 453 83.4
Sp6g22920 Schrenkiella parvula HOM05D012474 ORTHO05D008520 1.9e-62 244.2 453 79.2
CARHR191220 Cardamine hirsuta HOM05D012474 ORTHO05D008520 3.3e-62 243.4 455 78.5
A10p18500 Brassica napus HOM05D012474 ORTHO05D008520 1.2e-61 241.5 453 82.1
BraA10t43930Z Brassica rapa HOM05D012474 ORTHO05D008520 3.6e-61 240.0 453 81.7
C09p54250 Brassica napus HOM05D012474 ORTHO05D008520 1.8e-60 237.7 452 79.6
BolC9t58300H Brassica oleracea HOM05D012474 ORTHO05D008520 2.0e-59 234.2 452 79.2
BcaB08g36440 Brassica carinata HOM05D012474 ORTHO05D008520 4.9e-58 229.6 452 79.9
Thhalv10013516m.g Eutrema salsugineum HOM05D012474 ORTHO05D008520 1.0e-55 221.9 452 83.6
C09p54330 Brassica napus HOM05D012474 ORTHO05D008520 6.2e-53 212.6 443 78.3
Aa31LG1G13230 Aethionema arabicum HOM05D012474 ORTHO05D008520 8.1e-53 212.2 455 75.4
BcaC04g19565 Brassica carinata HOM05D012474 ORTHO05D008520 4.9e-50 203.0 452 79.0
THA.LOC104810927 Tarenaya hassleriana HOM05D007535 ORTHO05D008520 1.9e-30 137.9 455 67.0
FvH4_3g25730 Fragaria vesca HOM05D007535 ORTHO05D008520 1.3e-13 82.0 479 51.1
FAN11G3206 Fragaria x ananassa HOM05D007535 ORTHO05D008520 1.3e-13 82.0 479 52.4
Prupe.6G137100 Prunus persica HOM05D007535 ORTHO05D008520 2.2e-13 81.3 290 69.0
Atru.chr3.3166 Acer truncatum HOM05D007535 ORTHO05D008520 2.8e-13 80.9 243 32.5
FAN25G3072 Fragaria x ananassa HOM05D007535 ORTHO05D008520 1.4e-12 78.6 477 51.4
RcHm_v2.0_Chr5g0046091 Rosa chinensis HOM05D007535 ORTHO05D008520 1.8e-12 78.2 474 48.7
Nn6g34805 Nelumbo nucifera HOM05D007535 ORTHO05D008520 7.0e-12 76.3 244 27.0
Thecc.09G278200 Theobroma cacao HOM05D007535 ORTHO05D008520 1.2e-11 75.5 267 52.8
FAN21G0330 Fragaria x ananassa HOM05D007535 ORTHO05D008520 2.6e-11 74.3 271 25.1
TAR633G1755 Trochodendron aralioides HOM05D007535 ORTHO05D008520 2.9e-10 70.9 460 50.7
Manes.04G001100 Manihot esculenta HOM05D007535 ORTHO05D008520 1.1e-09 68.9 278 65.8
CSS0035480 Camellia sinensis var. sinensis HOM05D007535 ORTHO05D008520 1.9e-09 68.2 77 46.8
Actinidia07260 Actinidia chinensis HOM05D007535 ORTHO05D008520 3.2e-09 67.4 281 65.8
Gohir.A08G006800 Gossypium hirsutum HOM05D007535 ORTHO05D008520 3.2e-09 67.4 267 63.7
MD03G1150100 Malus domestica HOM05D007535 ORTHO05D008520 4.2e-09 67.0 274 74.5
Sc12g0004670 Simmondsia chinensis HOM05D007535 ORTHO05D008520 4.2e-09 67.0 279 55.9
ClCG01G011770 Citrullus lanatus HOM05D007535 ORTHO05D008520 5.5e-09 66.6 71 49.3
Rhsim13G0113500 Rhododendron simsii HOM05D000001 ORTHO05D000003 7.2e-09 66.2 81 44.4
vmacro03328 Vaccinium macrocarpon HOM05D007535 ORTHO05D008520 2.1e-08 64.7 74 47.3
Gorai.004G011300 Gossypium raimondii HOM05D007535 ORTHO05D008520 2.7e-08 64.3 479 45.7
Medtr2g086950 Medicago truncatula HOM05D007535 ORTHO05D008520 3.6e-08 63.9 74 43.2
Ciclev10028368m.g Citrus clementina HOM05D007535 ORTHO05D008520 4.7e-08 63.5 266 25.6
Potri.004G199200 Populus trichocarpa HOM05D007535 ORTHO05D008520 4.7e-08 63.5 274 74.8
PGR119G1786 Punica granatum HOM05D007535 ORTHO05D008520 6.1e-08 63.2 73 43.8
TWI79G0866 Tripterygium wilfordii HOM05D007535 ORTHO05D008520 6.1e-08 63.2 279 72.0
Gohir.D08G017000 Gossypium hirsutum HOM05D007535 ORTHO05D008520 8.0e-08 62.8 462 44.2
Lj2A969T70 Lonicera japonica HOM05D007535 ORTHO05D008520 8.0e-08 62.8 66 43.9
Sc12g0004620 Simmondsia chinensis HOM05D007535 ORTHO05D008520 8.0e-08 62.8 279 44.4
Cpa.g.sc195.29 Carica papaya HOM05D007535 ORTHO05D008520 1.0e-07 62.4 245 24.9
Aqoxy4G02717 Aquilegia oxysepala HOM05D007535 ORTHO05D008520 1.8e-07 61.6 46 60.9
Ciclev10028316m.g Citrus clementina HOM05D007535 ORTHO05D008520 1.8e-07 61.6 61 47.5
Haze_23344 Corylus avellana HOM05D007535 ORTHO05D008520 1.8e-07 61.6 246 27.6
Actinidia24230 Actinidia chinensis HOM05D007535 ORTHO05D008520 2.3e-07 61.2 68 44.1
Ciclev10029981m.g Citrus clementina HOM05D007535 ORTHO05D008520 2.3e-07 61.2 61 47.5
arahy.Tifrunner.gnm1.ann1.ETK20Z Arachis hypogaea HOM05D007535 ORTHO05D008520 3.0e-07 60.8 269 73.6
Cfa009985 Carpinus fangiana HOM05D007535 ORTHO05D008520 3.0e-07 60.8 454 51.8
CANSAT54G2250 Cannabis sativa HOM05D007535 ORTHO05D008520 3.9e-07 60.5 267 28.8
PSO384G1635 Papaver somniferum HOM05D007535 ORTHO05D008520 3.9e-07 60.5 72 37.5
Migut.N02473 Erythranthe guttata HOM05D007535 ORTHO05D008520 5.2e-07 60.1 282 70.6
Lalb_Chr24g0393491 Lupinus albus HOM05D007535 ORTHO05D008520 6.7e-07 59.7 244 27.9
Sed0017293 Sechium edule HOM05D007535 ORTHO05D008520 6.7e-07 59.7 69 44.9
CsaV3_1G015090 Cucumis sativus L. HOM05D007535 ORTHO05D008520 8.8e-07 59.3 71 43.7
HanXRQChr14g0433121 Helianthus annuus HOM05D007535 ORTHO05D008520 8.8e-07 59.3 277 69.0
Cc00_g20950 Coffea canephora HOM05D007535 ORTHO05D008520 1.1e-06 58.9 58 48.3
Lj3g0000707 Lotus japonicus HOM05D007535 ORTHO05D008520 1.1e-06 58.9 70 40.0
Os01g0966400 Oryza sativa ssp. japonica HOM05D007535 ORTHO05D008520 1.1e-06 58.9 89 42.7
TPR.G4567 Trifolium pratense HOM05D007535 ORTHO05D008520 1.1e-06 58.9 74 43.2
Hma1.2p1_2164F.1_g315730 Hydrangea macrophylla HOM05D007535 ORTHO05D008520 1.5e-06 58.5 270 22.6
Hma1.2p1_2164F.1_g315740 Hydrangea macrophylla HOM05D007535 ORTHO05D008520 1.5e-06 58.5 270 22.6
arahy.Tifrunner.gnm1.ann1.TGP3GH Arachis hypogaea HOM05D007535 ORTHO05D008520 2.0e-06 58.2 46 60.9
CAN.G745.17 Capsicum annuum HOM05D007535 ORTHO05D008520 2.0e-06 58.2 286 64.0
Peaxi162Scf00224g00216 Petunia axillaris HOM05D007535 ORTHO05D008520 2.0e-06 58.2 279 68.8
MSTRG.12377 Avicennia marina HOM05D007535 ORTHO05D008520 2.6e-06 57.8 46 56.5
Glyma.12G186700 Glycine max HOM05D007535 ORTHO05D008520 2.6e-06 57.8 74 44.6
FAN25G1573 Fragaria x ananassa HOM05D007535 ORTHO05D008520 3.3e-06 57.4 46 56.5
Sabra04G0134300 Salix brachista HOM05D001716 ORTHO05D004234 3.3e-06 57.4 66 45.5
Solyc11g068690.2 Solanum lycopersicum HOM05D007535 ORTHO05D008520 4.4e-06 57.0 281 66.5
Sopen11g027410 Solanum pennellii HOM05D007535 ORTHO05D008520 4.4e-06 57.0 281 66.5
unitig_27.g25117 Utricularia gibba HOM05D007535 ORTHO05D008520 4.4e-06 57.0 63 44.4
CiPaw.14G097800 Carya illinoinensis HOM05D007535 ORTHO05D008520 5.7e-06 56.6 74 39.2
SalBow3G0383 Salvia bowleyana HOM05D007535 ORTHO05D008520 5.7e-06 56.6 46 56.5
Hma1.2p1_2164F.1_g315720 Hydrangea macrophylla HOM05D007535 ORTHO05D008520 7.4e-06 56.2 46 58.7
PGSC0003DMG400026347 Solanum tuberosum HOM05D007535 ORTHO05D008520 7.4e-06 56.2 46 58.7
SGA_v2.0_scaffold177G39436 Striga asiatica HOM05D007535 ORTHO05D008520 7.4e-06 56.2 55 50.9
HPP92_011495 Vanilla planifolia HOM05D007535 ORTHO05D008520 7.4e-06 56.2 62 48.4
GSVIVG01036079001 Vitis vinifera HOM05D007535 ORTHO05D008520 7.4e-06 56.2 245 24.5
Psat5g257880 Pisum sativum HOM05D007535 ORTHO05D008520 9.7e-06 55.8 472 41.1
QL01p011831 Quercus lobata HOM05D007535 ORTHO05D008520 9.7e-06 55.8 78 38.5


User provided reference genes

Program Settings