Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT5G22210 Arabidopsis thaliana HOM05D003975 ORTHO05D009899 3.7e-41 171.0 81 100.0
CARHR191340 Cardamine hirsuta HOM05D003975 ORTHO05D009899 8.3e-41 169.9 81 98.8
AL6G33210 Arabidopsis lyrata HOM05D003975 ORTHO05D009899 7.0e-40 166.8 81 97.5
Sp6g23020 Schrenkiella parvula HOM05D003975 ORTHO05D009899 1.2e-39 166.0 81 96.3
Carub.0006s1995 Capsella rubella HOM05D003975 ORTHO05D009899 3.5e-39 164.5 81 95.1
BcaC04g19558 Brassica carinata HOM05D003975 ORTHO05D009899 3.0e-35 151.4 82 90.2
C09p54430 Brassica napus HOM05D003975 ORTHO05D009899 3.0e-35 151.4 82 90.2
BolC9t58312H Brassica oleracea HOM05D003975 ORTHO05D009899 3.0e-35 151.4 82 90.2
A10p18580 Brassica napus HOM05D003975 ORTHO05D009899 2.0e-34 148.7 82 89.0
BraA10t43938Z Brassica rapa HOM05D003975 ORTHO05D009899 1.7e-33 145.6 82 87.8
BcaB08g36448 Brassica carinata HOM05D003975 ORTHO05D009899 2.2e-33 145.2 82 87.8
THA.LOC104799562 Tarenaya hassleriana HOM05D003975 ORTHO05D009899 5.6e-29 130.6 81 75.3
GSVIVG01036058001 Vitis vinifera HOM05D003975 ORTHO05D009899 8.0e-28 126.7 81 75.3
Thecc.09G275700 Theobroma cacao HOM05D003975 ORTHO05D009899 1.2e-26 122.9 81 71.6
RcHm_v2.0_Chr5g0047291 Rosa chinensis HOM05D003975 ORTHO05D009899 2.0e-26 122.1 81 71.6
Sed0002680 Sechium edule HOM05D003975 ORTHO05D009899 2.0e-26 122.1 81 70.4
Hma1.2p1_0793F.1_g218650 Hydrangea macrophylla HOM05D003975 ORTHO05D009899 2.6e-26 121.7 81 74.1
Gohir.D07G115700 Gossypium hirsutum HOM05D003975 ORTHO05D009899 5.7e-26 120.6 81 69.1
Cc01_g08600 Coffea canephora HOM05D003975 ORTHO05D009899 7.5e-26 120.2 82 69.5
Duzib150G1666 Durio zibethinus HOM05D003975 ORTHO05D009899 7.5e-26 120.2 81 70.4
CSS0027551 Camellia sinensis var. sinensis HOM05D003975 ORTHO05D009899 1.3e-25 119.4 81 70.4
ClCG02G022390 Citrullus lanatus HOM05D003975 ORTHO05D009899 1.3e-25 119.4 82 70.7
FAN21G0333 Fragaria x ananassa HOM05D004708 ORTHO05D005573 1.3e-25 119.4 81 71.6
FAN11G2897 Fragaria x ananassa HOM05D004708 ORTHO05D009899 1.7e-25 119.0 81 71.6
Gorai.001G124000 Gossypium raimondii HOM05D003975 ORTHO05D009899 1.7e-25 119.0 81 67.9
Thecc.09G155000 Theobroma cacao HOM05D003975 ORTHO05D009899 2.9e-25 118.2 81 69.1
Eucgr.J00540 Eucalyptus grandis HOM05D003975 ORTHO05D009899 8.3e-25 116.7 81 67.9
Prupe.6G140000 Prunus persica HOM05D003975 ORTHO05D009899 1.1e-24 116.3 81 69.1
Migut.D02414 Erythranthe guttata HOM05D003975 ORTHO05D009899 1.4e-24 115.9 81 66.7
MD03G1152900 Malus domestica HOM05D003975 ORTHO05D009899 1.8e-24 115.5 81 67.9
QL01p011344 Quercus lobata HOM05D003975 ORTHO05D009899 1.8e-24 115.5 80 66.2
SalBow6G3564 Salvia bowleyana HOM05D003975 ORTHO05D009899 4.1e-24 114.4 81 66.7
Dinv08130 Davidia involucrata HOM05D003975 ORTHO05D009899 5.4e-24 114.0 81 67.9
Gohir.A07G112200 Gossypium hirsutum HOM05D003975 ORTHO05D009899 5.4e-24 114.0 81 65.4
Solyc11g068810.2 Solanum lycopersicum HOM05D003975 ORTHO05D009899 5.4e-24 114.0 81 66.7
Sopen11g027530 Solanum pennellii HOM05D003975 ORTHO05D009899 5.4e-24 114.0 81 66.7
Atru.chr3.3141 Acer truncatum HOM05D003975 ORTHO05D009899 9.2e-24 113.2 81 67.9
Potri.009G162200 Populus trichocarpa HOM05D003975 ORTHO05D009899 9.2e-24 113.2 87 63.2
MBI01_g04527_MAGBIO Magnolia biondii HOM05D003975 ORTHO05D009899 1.2e-23 112.8 81 66.7
Nitab4.5_0000893g0020 Nicotiana tabacum HOM05D003975 ORTHO05D009899 1.2e-23 112.8 81 66.7
Ciclev10029713m.g Citrus clementina HOM05D003975 ORTHO05D009899 1.6e-23 112.5 84 65.5
MELO3C014515.2 Cucumis melo HOM05D003975 ORTHO05D009899 1.6e-23 112.5 81 67.9
TAR633G2299 Trochodendron aralioides HOM05D003975 ORTHO05D009899 3.5e-23 111.3 73 68.5
Cfa009967 Carpinus fangiana HOM05D003975 ORTHO05D009899 4.6e-23 110.9 81 61.7
Nn6g34748 Nelumbo nucifera HOM05D003975 ORTHO05D009899 4.6e-23 110.9 82 62.2
PSO339G0200 Papaver somniferum HOM05D003975 ORTHO05D009899 4.6e-23 110.9 84 66.7
PSO384G0061 Papaver somniferum HOM05D003975 ORTHO05D009899 4.6e-23 110.9 84 66.7
PGSC0003DMG400019630 Solanum tuberosum HOM05D003975 ORTHO05D009899 4.6e-23 110.9 81 65.4
Nitab4.5_0001135g0190 Nicotiana tabacum HOM05D003975 ORTHO05D009899 5.9e-23 110.5 81 66.7
TWI31G0968 Tripterygium wilfordii HOM05D003975 ORTHO05D009899 1.0e-22 109.8 84 66.7
Haze_23328 Corylus avellana HOM05D003975 ORTHO05D009899 1.3e-22 109.4 81 61.7
DCAR_013070 Daucus carota HOM05D003975 ORTHO05D009899 2.3e-22 108.6 81 60.5
Potri.004G201000 Populus trichocarpa HOM05D003975 ORTHO05D009899 2.3e-22 108.6 89 60.7
Ah.01g020290 Amaranthus hybridus HOM05D003975 ORTHO05D009899 3.0e-22 108.2 81 64.2
ATR0772G086 Amborella trichopoda HOM05D003975 ORTHO05D009899 3.0e-22 108.2 84 60.7
arahy.Tifrunner.gnm1.ann1.QQFJ2J Arachis hypogaea HOM05D003975 ORTHO05D009899 3.0e-22 108.2 82 63.4
arahy.Tifrunner.gnm1.ann1.V52YDZ Arachis hypogaea HOM05D003975 ORTHO05D009899 3.0e-22 108.2 82 63.4
Lsat_1_v5_gn_2_56181 Lactuca sativa HOM05D000240 ORTHO05D001153 3.0e-22 108.2 82 62.2
CANSAT54G1521 Cannabis sativa HOM05D003975 ORTHO05D009899 5.0e-22 107.5 81 63.0
Sabra04G0136000 Salix brachista HOM05D003975 ORTHO05D009762 6.6e-22 107.1 87 57.5
Sabra09G0126700 Salix brachista HOM05D003975 ORTHO05D009762 6.6e-22 107.1 87 59.8
Phvul.003G054000 Phaseolus vulgaris HOM05D003975 ORTHO05D009899 8.6e-22 106.7 86 58.1
Aqoxy4G02677 Aquilegia oxysepala HOM05D003975 ORTHO05D009899 1.1e-21 106.3 86 61.6
CAN.G745.37 Capsicum annuum HOM05D003975 ORTHO05D009899 1.1e-21 106.3 81 63.0
AUR62011465 Chenopodium quinoa HOM05D003975 ORTHO05D009899 1.1e-21 106.3 81 63.0
Sabra15G0031600 Salix brachista HOM05D003975 ORTHO05D009899 1.1e-21 106.3 87 60.9
Sabra15G0048400 Salix brachista HOM05D003975 ORTHO05D009899 1.1e-21 106.3 87 60.9
Sabra15G0060100 Salix brachista HOM05D003975 ORTHO05D009899 1.1e-21 106.3 87 60.9
Lalb_Chr09g0335081 Lupinus albus HOM05D003975 ORTHO05D009899 1.5e-21 105.9 81 60.5
Peaxi162Scf00224g00092 Petunia axillaris HOM05D003975 ORTHO05D009899 1.5e-21 105.9 73 68.5
COL.COLO4_22656 Corchorus olitorius HOM05D003975 ORTHO05D009899 1.9e-21 105.5 68 70.6
HanXRQChr09g0248811 Helianthus annuus HOM05D003975 ORTHO05D009899 1.9e-21 105.5 79 60.8
CsaV3_6G038520 Cucumis sativus L. HOM05D003975 ORTHO05D009899 2.5e-21 105.1 76 64.5
Glyma.08G290000 Glycine max HOM05D003975 ORTHO05D009899 2.5e-21 105.1 81 63.0
Sabra15G0053200 Salix brachista HOM05D003975 ORTHO05D009899 3.3e-21 104.8 88 59.1
CAN.G745.38 Capsicum annuum HOM05D003975 ORTHO05D009899 4.3e-21 104.4 81 61.7
Sabra15G0046300 Salix brachista HOM05D003975 ORTHO05D009899 5.6e-21 104.0 86 60.5
Sabra15G0052000 Salix brachista HOM05D003975 ORTHO05D009899 5.6e-21 104.0 86 60.5
Sabra15G0053900 Salix brachista HOM05D003975 ORTHO05D009899 5.6e-21 104.0 86 60.5
unitig_0.g1469 Utricularia gibba HOM05D003975 ORTHO05D009899 7.3e-21 103.6 82 62.2
AUR62016590 Chenopodium quinoa HOM05D003975 ORTHO05D009899 6.2e-20 100.5 81 61.7
Glyma.18G134500 Glycine max HOM05D003975 ORTHO05D009899 6.2e-20 100.5 74 62.2
EL10Ac9g21860 Beta vulgaris HOM05D003975 ORTHO05D009899 2.3e-19 98.6 81 61.7
ECA238G1997 Erigeron canadensis HOM05D003975 ORTHO05D009899 2.3e-19 98.6 81 54.3
Sc03g0003650 Simmondsia chinensis HOM05D003975 ORTHO05D009899 7.5e-18 93.6 81 56.8
HPP92_009773 Vanilla planifolia HOM05D000917 ORTHO05D009899 1.9e-16 89.0 81 50.6
HPP92_009742 Vanilla planifolia HOM05D000917 ORTHO05D000764 1.2e-15 86.3 82 50.0
TAR268G0001 Trochodendron aralioides HOM05D001423 ORTHO05D001412 2.0e-15 85.5 67 58.2
MBI04_g20761_MAGBIO Magnolia biondii HOM05D003975 ORTHO05D009899 7.8e-07 57.0 40 57.5


User provided reference genes

Program Settings