Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT5G22120 Arabidopsis thaliana HOM05D006712 ORTHO05D008219 3.9e-205 718.0 384 100.0
AL6G33100 Arabidopsis lyrata HOM05D006712 ORTHO05D008219 2.1e-179 632.5 386 90.9
Carub.0006s1976 Capsella rubella HOM05D006712 ORTHO05D008219 9.0e-170 600.5 390 85.4
CARHR191410 Cardamine hirsuta HOM05D006712 ORTHO05D008219 4.9e-168 594.7 390 85.1
Sp6g23080 Schrenkiella parvula HOM05D006712 ORTHO05D008219 2.1e-158 562.8 401 79.8
Aa31LG1G13310 Aethionema arabicum HOM05D006712 ORTHO05D008219 1.6e-150 536.6 390 76.7
C03p12200 Brassica napus HOM05D006712 ORTHO05D008219 2.5e-140 502.7 372 76.6
BcaC01g06601 Brassica carinata HOM05D006712 ORTHO05D008219 7.4e-140 501.1 386 74.9
BolC3t13693H Brassica oleracea HOM05D006712 ORTHO05D008219 9.7e-140 500.7 372 76.3
A03p10600 Brassica napus HOM05D006712 ORTHO05D008219 2.8e-139 499.2 387 76.0
BraA03t10372Z Brassica rapa HOM05D006712 ORTHO05D008219 2.0e-137 493.0 388 74.7
BcaB01g04741 Brassica carinata HOM05D006712 ORTHO05D008219 1.6e-134 483.4 388 72.9
Thhalv10013868m.g Eutrema salsugineum HOM05D006712 ORTHO05D008219 4.5e-129 465.3 364 73.1
THA.LOC104810933 Tarenaya hassleriana HOM05D006712 ORTHO05D008219 1.7e-128 463.4 390 68.2
FAN16G2749 Fragaria x ananassa HOM05D006712 ORTHO05D008219 1.6e-94 350.5 374 55.9
Duzib168G2384 Durio zibethinus HOM05D006712 ORTHO05D008219 2.3e-93 346.7 377 56.0
FAN11G0164 Fragaria x ananassa HOM05D006712 ORTHO05D008219 4.0e-93 345.9 374 55.3
Potri.001G216500 Populus trichocarpa HOM05D006712 ORTHO05D008219 4.0e-93 345.9 388 54.4
Thecc.09G272000 Theobroma cacao HOM05D006712 ORTHO05D008219 2.2e-91 340.1 379 55.7
Manes.11G101400 Manihot esculenta HOM05D006712 ORTHO05D008219 4.9e-91 339.0 371 54.4
COL.COLO4_25432 Corchorus olitorius HOM05D006712 ORTHO05D008219 3.2e-90 336.3 384 55.7
Atru.chr3.3110 Acer truncatum HOM05D006712 ORTHO05D008219 1.3e-88 330.9 378 53.4
RcHm_v2.0_Chr5g0048501 Rosa chinensis HOM05D006712 ORTHO05D008219 1.3e-88 330.9 371 53.1
CiPaw.13G129200 Carya illinoinensis HOM05D006712 ORTHO05D008219 2.3e-88 330.1 386 52.1
Eucgr.B03815 Eucalyptus grandis HOM05D006712 ORTHO05D008219 1.9e-87 327.0 382 52.6
Gohir.A09G099400 Gossypium hirsutum HOM05D006712 ORTHO05D008219 9.5e-87 324.7 372 54.3
Cfa010172 Carpinus fangiana HOM05D006712 ORTHO05D008219 1.2e-86 324.3 369 52.3
Ciclev10028702m.g Citrus clementina HOM05D006712 ORTHO05D008219 4.7e-86 322.4 377 52.8
arahy.Tifrunner.gnm1.ann1.4CVW1F Arachis hypogaea HOM05D006712 ORTHO05D008219 3.1e-85 319.7 393 51.4
Lj1A268G10 Lonicera japonica HOM05D006712 ORTHO05D008219 1.5e-84 317.4 376 53.2
BcaB08g36451 Brassica carinata HOM05D002527 ORTHO05D008219 3.4e-84 316.2 249 71.9
Gorai.006G115800 Gossypium raimondii HOM05D006712 ORTHO05D008219 3.4e-84 316.2 388 51.8
Glyma.11G178255 Glycine max HOM05D006712 ORTHO05D008219 1.3e-83 314.3 375 53.3
Dinv18839 Davidia involucrata HOM05D006712 ORTHO05D008219 2.2e-83 313.5 368 52.2
AUR62001554 Chenopodium quinoa HOM05D006712 ORTHO05D008219 2.9e-83 313.2 374 52.7
Lalb_Chr19g0136261 Lupinus albus HOM05D006712 ORTHO05D008219 3.7e-83 312.8 374 51.9
VMungo1127G0962 Vigna mungo HOM05D006712 ORTHO05D008219 3.7e-83 312.8 373 52.0
AUR62020228 Chenopodium quinoa HOM05D006712 ORTHO05D008219 1.1e-82 311.2 374 51.9
Hma1.2p1_0101F.1_g049480 Hydrangea macrophylla HOM05D006712 ORTHO05D008219 1.1e-82 311.2 369 52.3
Phvul.011G099200 Phaseolus vulgaris HOM05D006712 ORTHO05D008219 7.1e-82 308.5 373 52.0
Hund20948 Selenicereus undatus HOM05D006712 ORTHO05D008219 7.1e-82 308.5 396 49.5
TWI31G0890 Tripterygium wilfordii HOM05D006712 ORTHO05D008219 2.1e-81 307.0 390 49.5
Nitab4.5_0008897g0020 Nicotiana tabacum HOM05D006712 ORTHO05D008219 7.8e-81 305.1 376 49.7
Sopen06g030560 Solanum pennellii HOM05D006712 ORTHO05D008219 7.8e-81 305.1 371 49.1
PGSC0003DMG400005929 Solanum tuberosum HOM05D006712 ORTHO05D008219 2.3e-80 303.5 371 48.5
CAN.G919.48 Capsicum annuum HOM05D006712 ORTHO05D008219 5.1e-80 302.4 368 50.0
MELO3C015061.2 Cucumis melo HOM05D006712 ORTHO05D008219 5.1e-80 302.4 383 49.9
Glyma.12G094900 Glycine max HOM05D006712 ORTHO05D008219 6.6e-80 302.0 371 52.0
CsaV3_1G043820 Cucumis sativus L. HOM05D006712 ORTHO05D008219 1.9e-79 300.4 382 49.2
EL10Ac7g16293 Beta vulgaris HOM05D006712 ORTHO05D008219 3.3e-79 299.7 407 49.1
Sc21g0006790 Simmondsia chinensis HOM05D006712 ORTHO05D008219 2.1e-78 297.0 375 48.5
CSS0013127 Camellia sinensis var. sinensis HOM05D006712 ORTHO05D008219 4.7e-78 295.8 371 49.1
Sed0013977 Sechium edule HOM05D006712 ORTHO05D008219 4.7e-78 295.8 380 49.2
Lj3g0027754 Lotus japonicus HOM05D006712 ORTHO05D008219 1.1e-77 294.7 382 49.2
Nitab4.5_0000380g0060 Nicotiana tabacum HOM05D006712 ORTHO05D008219 4.0e-77 292.7 409 46.7
ClCG03G012180 Citrullus lanatus HOM05D006712 ORTHO05D008219 2.6e-76 290.0 421 45.8
MSTRG.17680 Avicennia marina HOM05D006712 ORTHO05D008219 9.9e-76 288.1 384 48.4
Cc01_g07690 Coffea canephora HOM05D006712 ORTHO05D008219 1.7e-75 287.3 383 49.3
arahy.Tifrunner.gnm1.ann1.UJS8TC Arachis hypogaea HOM05D006712 ORTHO05D008219 3.8e-75 286.2 385 48.8
SalBow3G4582 Salvia bowleyana HOM05D006712 ORTHO05D008219 2.4e-74 283.5 389 46.5
Aqoxy1G00652 Aquilegia oxysepala HOM05D006712 ORTHO05D008219 4.1e-74 282.7 368 50.3
TAR623G0680 Trochodendron aralioides HOM05D006712 ORTHO05D008219 9.2e-74 281.6 375 48.5
Rhsim13G0196500 Rhododendron simsii HOM05D006712 ORTHO05D008219 1.6e-73 280.8 454 42.1
PSO384G4991 Papaver somniferum HOM05D006712 ORTHO05D008219 2.1e-73 280.4 378 48.7
BcaC04g19542 Brassica carinata HOM05D006712 ORTHO05D008219 4.6e-73 279.3 232 68.5
Lalb_Chr03g0028431 Lupinus albus HOM05D006712 ORTHO05D008219 7.8e-73 278.5 388 46.4
PSO339G1919 Papaver somniferum HOM05D006712 ORTHO05D008219 1.7e-72 277.3 378 48.9
DCAR_014052 Daucus carota HOM05D006712 ORTHO05D008219 2.3e-72 276.9 378 46.6
Cpa.g.sc103.11 Carica papaya HOM05D006712 ORTHO05D008219 3.0e-72 276.6 325 50.2
Gohir.D09G098800 Gossypium hirsutum HOM05D006712 ORTHO05D008219 3.9e-72 276.2 234 64.1
Peaxi162Scf00098g00079 Petunia axillaris HOM05D006712 ORTHO05D008219 9.9e-68 261.5 369 46.1
Ca_19473_v3 Cicer arietinum L. HOM05D006712 ORTHO05D008219 1.1e-66 258.1 380 47.6
GSVIVG01037582001 Vitis vinifera HOM05D006712 ORTHO05D008219 1.1e-66 258.1 240 57.1
MD14G1087800 Malus domestica HOM05D006712 ORTHO05D008219 1.9e-66 257.3 229 59.8
Oeu009041.1 Olea europaea HOM05D006712 ORTHO05D008219 6.0e-65 252.3 382 45.5
GSVIVG01024643001 Vitis vinifera HOM05D006712 ORTHO05D008219 4.3e-63 246.1 240 56.2
FvH4_3g26410 Fragaria vesca HOM05D006712 ORTHO05D008219 3.1e-61 240.0 373 45.0
Zm00001eb282230 Zea mays HOM05D006712 ORTHO05D008219 7.6e-60 235.3 385 41.3
Medtr4g051518 Medicago truncatula HOM05D006712 ORTHO05D008219 1.1e-58 231.5 265 50.2
Lsat_1_v5_gn_2_34521 Lactuca sativa HOM05D006712 ORTHO05D008219 5.4e-58 229.2 250 52.8
Migut.N02451 Erythranthe guttata HOM05D006712 ORTHO05D008219 7.1e-58 228.8 255 54.1
ECA238G0730 Erigeron canadensis HOM05D006712 ORTHO05D008219 1.8e-56 224.2 235 51.1
Hma1.2p1_0101F.1_g049490 Hydrangea macrophylla HOM05D006712 ORTHO05D008219 6.7e-56 222.2 231 55.4
Psat7g204400 Pisum sativum HOM05D006712 ORTHO05D008219 2.1e-54 217.2 297 48.1
SGA_v2.0_scaffold92G28138 Striga asiatica HOM05D006712 ORTHO05D008219 2.8e-54 216.9 355 42.8
HanXRQChr04g0096771 Helianthus annuus HOM05D006712 ORTHO05D008219 1.1e-53 214.9 235 49.8
Sabra16G0127200 Salix brachista HOM05D006712 ORTHO05D008219 1.1e-53 214.9 294 49.0
HPP92_002650 Vanilla planifolia HOM05D006712 ORTHO05D008219 5.3e-53 212.6 375 41.6
unitig_27.g25124 Utricularia gibba HOM05D006712 ORTHO05D008219 1.2e-52 211.5 369 40.1
Actinidia24254 Actinidia chinensis HOM05D006712 ORTHO05D008219 7.6e-52 208.8 376 40.7
vmacro03955 Vaccinium macrocarpon HOM05D006712 ORTHO05D008219 9.9e-52 208.4 479 36.5
Actinidia07277 Actinidia chinensis HOM05D006712 ORTHO05D008219 1.9e-50 204.1 246 50.0
QL01p019587 Quercus lobata HOM05D006712 ORTHO05D008219 1.9e-50 204.1 147 68.0
TPR.G4637 Trifolium pratense HOM05D006712 ORTHO05D008219 4.6e-49 199.5 295 45.4
CDE06G0581 Ceratophyllum demersum HOM05D006712 ORTHO05D008219 2.3e-48 197.2 371 38.8
BraA10t43946Z Brassica rapa HOM05D006712 ORTHO05D008219 2.1e-46 190.7 209 61.2
MBI17_g02433_MAGBIO Magnolia biondii HOM05D006712 ORTHO05D008219 2.1e-46 190.7 308 40.9
Ah.15g099020 Amaranthus hybridus HOM05D006712 ORTHO05D008219 4.0e-45 186.4 284 46.1
A10p18660 Brassica napus HOM05D002527 ORTHO05D002865 6.9e-45 185.7 216 57.9
Os01g0965600 Oryza sativa ssp. japonica HOM05D006712 ORTHO05D008219 1.0e-43 181.8 264 46.2
SHI25255 Sapria himalayana HOM05D000265 ORTHO05D000161 6.5e-43 179.1 226 45.1
SEGI_35195 Sequoiadendron giganteum HOM05D006712 ORTHO05D008219 6.5e-43 179.1 236 47.5
C09p54580 Brassica napus HOM05D006712 ORTHO05D008219 1.9e-42 177.6 152 68.4
BolC9t58325H Brassica oleracea HOM05D006712 ORTHO05D008219 1.9e-42 177.6 152 68.4
Haze_23559 Corylus avellana HOM05D006712 ORTHO05D008219 1.2e-41 174.9 290 44.1
Mapoly0027s0100 Marchantia polymorpha HOM05D006712 ORTHO05D008219 2.8e-38 163.7 400 34.5
BcaC04g19541 Brassica carinata HOM05D002527 ORTHO05D002865 4.8e-38 162.9 236 46.6
Prupe.7G038700 Prunus persica HOM05D006712 ORTHO05D008219 3.4e-36 156.8 233 43.3
Nn6g34683 Nelumbo nucifera HOM05D006712 ORTHO05D008219 1.3e-35 154.8 394 36.5
Pp3c7_620 Physcomitrium patens HOM05D006712 ORTHO05D008219 7.2e-34 149.1 383 32.6
ATR0772G163 Amborella trichopoda HOM05D006712 ORTHO05D008219 9.3e-34 148.7 289 40.1
Thecc.09G272200 Theobroma cacao HOM05D006712 ORTHO05D008219 3.6e-33 146.7 137 56.9
SMO119G0218 Selaginella moellendorffii HOM05D006712 ORTHO05D008219 6.7e-32 142.5 351 32.5
AagrBONN_evm.TU.Sc2ySwM_117.1746 Anthoceros agrestis HOM05D006712 ORTHO05D008219 1.7e-22 111.3 237 38.4
QL01p019597 Quercus lobata HOM05D006712 ORTHO05D008219 5.3e-21 106.3 225 38.7
Medtr4g051435 Medicago truncatula HOM05D000445 ORTHO05D000314 1.4e-18 98.2 100 53.0
BcaC01g06603 Brassica carinata HOM05D006712 ORTHO05D008219 7.9e-17 92.4 76 69.7
CBR_g40336 Chara braunii HOM05D006712 ORTHO05D008219 1.8e-16 91.3 287 28.6
C09p54560 Brassica napus HOM05D000021 ORTHO05D000010 3.0e-16 90.5 56 80.4
BolC9t58324H Brassica oleracea HOM05D000021 ORTHO05D000010 3.0e-16 90.5 56 80.4
FAN21G2251 Fragaria x ananassa HOM05D006712 ORTHO05D008219 5.2e-16 89.7 65 67.7
Sabra16G0127300 Salix brachista HOM05D006712 ORTHO05D008219 5.2e-16 89.7 73 68.5
ATR0772G219 Amborella trichopoda HOM05D006712 ORTHO05D008219 8.8e-16 89.0 93 57.0
Duzib170G0178 Durio zibethinus HOM05D006712 ORTHO05D008219 1.0e-11 75.5 93 49.5
CDE07G1644 Ceratophyllum demersum HOM05D006712 ORTHO05D008219 6.5e-11 72.8 63 61.9
BcaC04g19543 Brassica carinata HOM05D006712 ORTHO05D008219 9.4e-10 68.9 58 69.0
Cre08.g362850 Chlamydomonas reinhardtii HOM05D006712 ORTHO05D008219 8.2e-06 55.8 154 29.9


User provided reference genes

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