Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT5G21070 Arabidopsis thaliana HOM05D005119 ORTHO05D006338 1.5e-119 433.0 226 100.0
Carub.0006s1937 Capsella rubella HOM05D005119 ORTHO05D006338 1.2e-118 429.9 226 99.1
AL6G32630 Arabidopsis lyrata HOM05D005119 ORTHO05D006338 2.1e-118 429.1 226 99.1
Thhalv10014597m.g Eutrema salsugineum HOM05D005119 ORTHO05D006338 4.0e-117 424.9 226 98.2
CARHR191800 Cardamine hirsuta HOM05D005119 ORTHO05D006338 2.0e-116 422.5 226 97.3
C09p55010 Brassica napus HOM05D005119 ORTHO05D006338 2.2e-115 419.1 227 96.5
Sp6g23450 Schrenkiella parvula HOM05D005119 ORTHO05D006338 2.2e-115 419.1 226 96.9
BNapus_Darmor_BZH_scaffold_38p01200 Brassica napus HOM05D005119 ORTHO05D006338 1.4e-114 416.4 226 96.9
C02p10590 Brassica napus HOM05D005119 ORTHO05D006338 1.4e-114 416.4 226 96.9
BolC9t58364H Brassica oleracea HOM05D005119 ORTHO05D006338 1.4e-114 416.4 227 96.0
BraA02t05611Z Brassica rapa HOM05D005119 ORTHO05D006338 1.4e-114 416.4 226 96.9
BcaC03g13824 Brassica carinata HOM05D005119 ORTHO05D006338 1.8e-114 416.0 226 96.5
BcaB08g36485 Brassica carinata HOM05D005119 ORTHO05D006338 2.4e-114 415.6 226 96.5
BolC2t07092H Brassica oleracea HOM05D005119 ORTHO05D006338 5.4e-114 414.5 226 96.0
BcaB05g22789 Brassica carinata HOM05D005119 ORTHO05D006338 1.2e-113 413.3 227 96.9
A10p19000 Brassica napus HOM05D005119 ORTHO05D006338 2.0e-113 412.5 227 94.7
BraA10t43978Z Brassica rapa HOM05D005119 ORTHO05D006338 2.0e-113 412.5 227 94.7
Aa31LG1G13700 Aethionema arabicum HOM05D005119 ORTHO05D006338 1.3e-112 409.8 226 95.6
PGR102G2321 Punica granatum HOM05D005119 ORTHO05D006338 1.5e-108 396.4 227 92.1
RcHm_v2.0_Chr5g0049761 Rosa chinensis HOM05D005119 ORTHO05D006338 5.8e-108 394.4 226 90.7
FAN21G1454 Fragaria x ananassa HOM05D005119 ORTHO05D006338 9.8e-108 393.7 229 90.4
Atru.chr3.2860 Acer truncatum HOM05D005119 ORTHO05D006338 1.3e-107 393.3 226 90.7
GSVIVG01037452001 Vitis vinifera HOM05D005119 ORTHO05D006338 1.3e-107 393.3 229 89.5
FAN21G3401 Fragaria x ananassa HOM05D005119 ORTHO05D006338 1.7e-107 392.9 229 90.0
Lalb_Chr17g0347491 Lupinus albus HOM05D005119 ORTHO05D006338 3.7e-107 391.7 228 89.0
FAN16G2078 Fragaria x ananassa HOM05D005119 ORTHO05D006338 8.3e-107 390.6 226 90.3
CSS0022741 Camellia sinensis var. sinensis HOM05D005119 ORTHO05D006338 1.1e-106 390.2 230 89.1
Migut.N02419 Erythranthe guttata HOM05D005119 ORTHO05D006338 1.9e-106 389.4 224 90.6
Psat2g022840 Pisum sativum HOM05D005119 ORTHO05D006338 1.9e-106 389.4 234 87.2
Prupe.6G153600 Prunus persica HOM05D005119 ORTHO05D006338 3.2e-106 388.7 227 89.9
Thecc.09G337400 Theobroma cacao HOM05D005119 ORTHO05D006338 3.2e-106 388.7 227 89.9
Eucgr.B03785 Eucalyptus grandis HOM05D005119 ORTHO05D006338 7.0e-106 387.5 226 90.3
Glyma.14G041900 Glycine max HOM05D005119 ORTHO05D006338 7.0e-106 387.5 230 88.7
SalBow3G0587 Salvia bowleyana HOM05D005119 ORTHO05D006338 7.0e-106 387.5 224 90.2
VMungo0647G2262 Vigna mungo HOM05D005119 ORTHO05D006338 1.2e-105 386.7 230 88.7
Ca_06151_v3 Cicer arietinum L. HOM05D005119 ORTHO05D006338 1.6e-105 386.3 234 86.3
THA.LOC104799587 Tarenaya hassleriana HOM05D005119 ORTHO05D006338 2.0e-105 386.0 226 88.9
Duzib170G0448 Durio zibethinus HOM05D005119 ORTHO05D006338 2.7e-105 385.6 228 89.5
Glyma.02G274200 Glycine max HOM05D005119 ORTHO05D006338 2.7e-105 385.6 227 89.9
Gorai.009G105100 Gossypium raimondii HOM05D005119 ORTHO05D006338 2.7e-105 385.6 227 89.4
Phvul.008G207500 Phaseolus vulgaris HOM05D005119 ORTHO05D006338 2.7e-105 385.6 230 88.7
Actinidia07012 Actinidia chinensis HOM05D005119 ORTHO05D006338 3.5e-105 385.2 227 90.3
CANSAT54G2327 Cannabis sativa HOM05D005119 ORTHO05D006338 3.5e-105 385.2 230 89.1
Gohir.D05G101000 Gossypium hirsutum HOM05D005119 ORTHO05D006338 4.6e-105 384.8 227 89.0
Hma1.2p1_0218F.1_g092630 Hydrangea macrophylla HOM05D005119 ORTHO05D006338 4.6e-105 384.8 231 87.4
TPR.G11644 Trifolium pratense HOM05D005119 ORTHO05D006338 4.6e-105 384.8 232 87.1
Gohir.D08G008500 Gossypium hirsutum HOM05D005119 ORTHO05D006338 6.0e-105 384.4 228 89.5
Gorai.004G001700 Gossypium raimondii HOM05D005119 ORTHO05D006338 6.0e-105 384.4 228 89.5
Duzib168G2211 Durio zibethinus HOM05D005119 ORTHO05D006338 7.8e-105 384.0 227 89.0
Sopen11g029200 Solanum pennellii HOM05D005119 ORTHO05D006338 7.8e-105 384.0 224 89.7
PGSC0003DMG400018703 Solanum tuberosum HOM05D005119 ORTHO05D006338 7.8e-105 384.0 224 89.7
Gohir.A05G101200 Gossypium hirsutum HOM05D005119 ORTHO05D006338 2.3e-104 382.5 227 89.0
Potri.004G196600 Populus trichocarpa HOM05D005119 ORTHO05D006338 2.3e-104 382.5 229 87.3
Potri.009G158800 Populus trichocarpa HOM05D005119 ORTHO05D006338 2.3e-104 382.5 231 87.4
Cc01_g07550 Coffea canephora HOM05D005119 ORTHO05D006338 3.0e-104 382.1 226 88.1
COL.COLO4_18366 Corchorus olitorius HOM05D005396 ORTHO05D006338 3.0e-104 382.1 209 94.7
arahy.Tifrunner.gnm1.ann1.JSP71L Arachis hypogaea HOM05D005119 ORTHO05D006338 3.9e-104 381.7 231 86.6
MELO3C015629.2 Cucumis melo HOM05D005119 ORTHO05D006338 3.9e-104 381.7 231 86.6
arahy.Tifrunner.gnm1.ann1.4E592X Arachis hypogaea HOM05D005119 ORTHO05D006338 6.6e-104 380.9 231 86.6
Rhsim13G0201000 Rhododendron simsii HOM05D005119 ORTHO05D006338 6.6e-104 380.9 232 86.6
HanXRQChr13g0420891 Helianthus annuus HOM05D005119 ORTHO05D006338 8.6e-104 380.6 222 89.2
MSTRG.17662 Avicennia marina HOM05D005119 ORTHO05D006338 1.1e-103 380.2 225 88.0
Dinv05232 Davidia involucrata HOM05D005119 ORTHO05D006338 1.1e-103 380.2 227 88.5
MD11G1180800 Malus domestica HOM05D005119 ORTHO05D006338 1.1e-103 380.2 230 87.0
Medtr5g087720 Medicago truncatula HOM05D005119 ORTHO05D006338 1.9e-103 379.4 214 91.1
PSO339G0009 Papaver somniferum HOM05D005119 ORTHO05D006338 1.9e-103 379.4 227 87.2
unitig_27.g25021 Utricularia gibba HOM05D005119 ORTHO05D006338 1.9e-103 379.4 225 87.6
Lj2A941G6 Lonicera japonica HOM05D005119 ORTHO05D006338 2.5e-103 379.0 226 89.4
Manes.11G112200 Manihot esculenta HOM05D005119 ORTHO05D006338 2.5e-103 379.0 228 88.2
THA.LOC104810964 Tarenaya hassleriana HOM05D005119 ORTHO05D006338 2.5e-103 379.0 229 87.8
vmacro04109 Vaccinium macrocarpon HOM05D005119 ORTHO05D006338 2.5e-103 379.0 235 85.5
DCAR_002131 Daucus carota HOM05D005119 ORTHO05D006338 3.3e-103 378.6 222 88.3
FAN25G0803 Fragaria x ananassa HOM05D005119 ORTHO05D006338 3.3e-103 378.6 256 80.5
Oeu026660.1 Olea europaea HOM05D005119 ORTHO05D006338 3.3e-103 378.6 227 86.3
Peaxi162Scf00217g00811 Petunia axillaris HOM05D005119 ORTHO05D006338 4.3e-103 378.3 224 90.2
QL01p020410 Quercus lobata HOM05D005119 ORTHO05D006338 4.3e-103 378.3 233 86.7
Nitab4.5_0010431g0020 Nicotiana tabacum HOM05D005119 ORTHO05D006338 5.6e-103 377.9 224 88.8
EL10Ac7g16218 Beta vulgaris HOM05D005119 ORTHO05D006338 7.3e-103 377.5 230 87.8
Ciclev10016530m.g Citrus clementina HOM05D005119 ORTHO05D006338 7.3e-103 377.5 231 87.4
Lj6g0018237 Lotus japonicus HOM05D005119 ORTHO05D006338 7.3e-103 377.5 233 85.8
SGA_v2.0_scaffold16G07568 Striga asiatica HOM05D005119 ORTHO05D006338 9.5e-103 377.1 225 88.4
Dinv25746 Davidia involucrata HOM05D005119 ORTHO05D006338 1.6e-102 376.3 227 88.5
Manes.04G053600 Manihot esculenta HOM05D005119 ORTHO05D006338 1.6e-102 376.3 227 88.5
Sed0002058 Sechium edule HOM05D005119 ORTHO05D006338 2.1e-102 375.9 231 85.3
CAN.G864.4 Capsicum annuum HOM05D005119 ORTHO05D006338 3.6e-102 375.2 224 88.4
ClCG03G014150 Citrullus lanatus HOM05D005119 ORTHO05D006338 3.6e-102 375.2 231 86.1
MBI13_g02397_MAGBIO Magnolia biondii HOM05D005119 ORTHO05D006338 3.6e-102 375.2 227 85.9
PGSC0003DMG400008707 Solanum tuberosum HOM05D005119 ORTHO05D006338 3.6e-102 375.2 223 88.3
ECA240G4195 Erigeron canadensis HOM05D005119 ORTHO05D006338 4.7e-102 374.8 232 85.3
Sopen01g004620 Solanum pennellii HOM05D005119 ORTHO05D006338 4.7e-102 374.8 223 88.3
PSO384G4010 Papaver somniferum HOM05D005119 ORTHO05D006338 6.2e-102 374.4 227 86.3
TWI79G0087 Tripterygium wilfordii HOM05D005119 ORTHO05D006338 8.1e-102 374.0 227 87.2
LjContig00564g0012096 Lotus japonicus HOM05D005119 ORTHO05D006338 1.1e-101 373.6 232 85.8
MSTRG.12410 Avicennia marina HOM05D005119 ORTHO05D006338 2.3e-101 372.5 225 86.2
TAR636G0794 Trochodendron aralioides HOM05D005119 ORTHO05D006338 2.3e-101 372.5 231 86.6
CsaV3_1G042110 Cucumis sativus L. HOM05D005119 ORTHO05D006338 6.8e-101 370.9 231 85.3
TWI75G0877 Tripterygium wilfordii HOM05D005119 ORTHO05D006338 6.8e-101 370.9 231 86.6
Sed0001894 Sechium edule HOM05D005119 ORTHO05D006338 1.2e-100 370.2 231 84.4
Nitab4.5_0001183g0030 Nicotiana tabacum HOM05D005119 ORTHO05D006338 1.5e-100 369.8 206 93.2
Hund18832 Selenicereus undatus HOM05D005119 ORTHO05D006338 1.5e-100 369.8 208 92.8
Aqoxy2G00066 Aquilegia oxysepala HOM05D005119 ORTHO05D006338 3.7e-99 365.2 231 83.5
Lsat_1_v5_gn_3_116100 Lactuca sativa HOM05D005119 ORTHO05D006338 3.7e-99 365.2 203 92.6
MBI19_g28105_MAGBIO Magnolia biondii HOM05D005119 ORTHO05D006338 3.7e-99 365.2 224 83.5
Sabra04G0133300 Salix brachista HOM05D005119 ORTHO05D006338 4.9e-99 364.8 229 83.8
SEGI_02516 Sequoiadendron giganteum HOM05D005119 ORTHO05D006338 1.4e-98 363.2 215 87.9
Os01g0277700 Oryza sativa ssp. japonica HOM05D005119 ORTHO05D006338 1.9e-98 362.8 224 83.0
AUR62001614 Chenopodium quinoa HOM05D005119 ORTHO05D006338 2.4e-98 362.5 225 85.8
ATR0307G125 Amborella trichopoda HOM05D005119 ORTHO05D006338 1.2e-97 360.1 226 83.6
Sc21g0006500 Simmondsia chinensis HOM05D005119 ORTHO05D006338 2.1e-97 359.4 207 91.8
Zm00001eb128960 Zea mays HOM05D005119 ORTHO05D006338 3.0e-96 355.5 221 81.9
HPP92_006662 Vanilla planifolia HOM05D005119 ORTHO05D006338 6.6e-96 354.4 228 82.9
Oeu022226.2 Olea europaea HOM05D005119 ORTHO05D006338 6.8e-93 344.4 300 65.7
Sabra09G0124300 Salix brachista HOM05D005119 ORTHO05D006338 1.4e-90 336.7 233 79.0
SMO347G0469 Selaginella moellendorffii HOM05D005119 ORTHO05D006338 2.7e-89 332.4 214 80.8
Ah.08g222830 Amaranthus hybridus HOM05D005119 ORTHO05D006338 2.3e-88 329.3 192 90.1
CDE07G1923 Ceratophyllum demersum HOM05D005119 ORTHO05D006338 3.1e-85 318.9 214 76.2
Mapoly0024s0118 Marchantia polymorpha HOM05D005119 ORTHO05D006338 1.4e-82 310.1 211 76.3
Solyc11g071510.3 Solanum lycopersicum HOM05D005119 ORTHO05D006338 3.3e-79 298.9 190 84.7
Pp3c19_11640 Physcomitrium patens HOM05D005119 ORTHO05D006338 3.6e-78 295.4 220 72.3
Haze_23668 Corylus avellana HOM05D005119 ORTHO05D006338 6.2e-78 294.7 194 84.0
Lj2C929T5 Lonicera japonica HOM05D005119 ORTHO05D006338 5.8e-76 288.1 179 87.2
Nn7g37297 Nelumbo nucifera HOM05D005119 ORTHO05D006338 2.2e-75 286.2 174 83.9
TAR369G0017 Trochodendron aralioides HOM05D005119 ORTHO05D006338 1.1e-74 283.9 158 94.9
Gohir.A08G000076 Gossypium hirsutum HOM05D005119 ORTHO05D006338 1.4e-74 283.5 162 91.4
FvH4_3g27140 Fragaria vesca HOM05D005119 ORTHO05D006338 1.9e-74 283.1 158 93.0
CiPaw.14G091700 Carya illinoinensis HOM05D005119 ORTHO05D006338 4.2e-74 282.0 158 93.7
DCAR_031602 Daucus carota HOM05D005119 ORTHO05D006338 2.3e-72 276.2 192 79.7
SGA_v2.0_scaffold79G25507 Striga asiatica HOM05D005119 ORTHO05D006338 5.6e-71 271.6 170 85.3
AagrBONN_evm.TU.Sc2ySwM_228.3807 Anthoceros agrestis HOM05D000001 ORTHO05D000003 1.3e-70 270.4 186 77.4
Cpa.g.sc103.65 Carica papaya HOM05D005119 ORTHO05D006338 3.1e-69 265.8 161 88.2
CDE08G0206 Ceratophyllum demersum HOM05D005119 ORTHO05D006338 6.9e-69 264.6 180 77.8
CDE04G1732 Ceratophyllum demersum HOM05D005119 ORTHO05D001779 3.1e-61 239.2 160 78.1
AUR62020163 Chenopodium quinoa HOM05D005119 ORTHO05D006338 2.8e-54 216.1 124 91.1
EL10Ac8g19914 Beta vulgaris HOM05D005119 ORTHO05D006338 1.1e-53 214.2 161 74.5
Gorai.006G031100 Gossypium raimondii HOM05D005119 ORTHO05D006338 1.5e-44 183.7 110 90.0
Solyc01g009145.1 Solanum lycopersicum HOM05D005119 ORTHO05D006338 1.9e-42 176.8 103 90.3
EL10Ac6g14714 Beta vulgaris HOM05D005119 ORTHO05D006338 1.8e-40 170.2 102 89.2
Gohir.D11G235450 Gossypium hirsutum HOM05D005119 ORTHO05D006338 1.0e-35 154.5 158 57.0
Gorai.004G093900 Gossypium raimondii HOM05D005119 ORTHO05D006338 5.5e-34 148.7 88 89.8
AagrBONN_evm.TU.Sc2ySwM_368.775 Anthoceros agrestis HOM05D005119 ORTHO05D006338 6.3e-30 135.2 79 84.8
PRCOL_00002764 Prasinoderma coloniale HOM05D005119 ORTHO05D006338 1.0e-24 117.9 206 38.3
arahy.Tifrunner.gnm1.ann1.PKBV9I Arachis hypogaea HOM05D005119 ORTHO05D006338 1.5e-23 114.0 81 76.5
Actinidia37188 Actinidia chinensis HOM05D005119 ORTHO05D006338 9.7e-23 111.3 57 94.7
RcHm_v2.0_Chr5g0049771 Rosa chinensis HOM05D005119 ORTHO05D006338 2.5e-18 96.7 63 77.8
Oeu048804.2 Olea europaea HOM05D001997 ORTHO05D004620 3.0e-16 89.7 66 69.7
SHI25369 Sapria himalayana HOM05D005119 ORTHO05D006338 1.2e-15 87.8 65 67.7
Dinv01011 Davidia involucrata HOM05D005119 ORTHO05D006338 6.5e-11 72.0 46 78.3


User provided reference genes

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