Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT5G20180 Arabidopsis thaliana HOM05D005333 ORTHO05D005776 1.9e-53 212.2 104 100.0
AL6G31740 Arabidopsis lyrata HOM05D005333 ORTHO05D005776 1.6e-49 199.1 104 92.3
Carub.0006s1858 Capsella rubella HOM05D005333 ORTHO05D005776 5.3e-48 194.1 104 89.4
Sp6g24220 Schrenkiella parvula HOM05D005333 ORTHO05D005776 1.6e-44 182.6 104 84.6
C03p11490 Brassica napus HOM05D005333 ORTHO05D005776 1.3e-43 179.5 104 82.7
BolC3t13621H Brassica oleracea HOM05D005333 ORTHO05D005776 5.1e-43 177.6 104 81.7
BraA03t10304Z Brassica rapa HOM05D005333 ORTHO05D005776 5.1e-43 177.6 104 81.7
Thhalv10015097m.g Eutrema salsugineum HOM05D005333 ORTHO05D005776 1.1e-42 176.4 104 81.7
A03p09910 Brassica napus HOM05D005333 ORTHO05D005776 4.3e-42 174.5 104 80.8
THA.LOC104799642 Tarenaya hassleriana HOM05D005333 ORTHO05D005776 2.4e-37 158.7 104 76.9
BraA02t05559Z Brassica rapa HOM05D005333 ORTHO05D005776 1.3e-35 152.9 102 69.6
CARHR192640 Cardamine hirsuta HOM05D005333 ORTHO05D005776 6.7e-35 150.6 106 74.5
BcaB05g22866 Brassica carinata HOM05D005333 ORTHO05D005776 1.1e-34 149.8 103 69.9
BcaC03g13741 Brassica carinata HOM05D005333 ORTHO05D005776 4.3e-34 147.9 102 67.6
BolC2t07023H Brassica oleracea HOM05D005333 ORTHO05D005776 4.3e-34 147.9 102 67.6
A02p06080 Brassica napus HOM05D005333 ORTHO05D005776 7.4e-34 147.1 102 67.6
Aa31LG1G14430 Aethionema arabicum HOM05D005333 ORTHO05D005776 8.1e-33 143.7 104 69.2
BNapus_Darmor_BZH_scaffold_38p01760 Brassica napus HOM05D005333 ORTHO05D005776 6.9e-32 140.6 103 66.0
Potri.018G131000 Populus trichocarpa HOM05D005333 ORTHO05D005776 8.4e-30 133.7 104 65.4
QL02p088661 Quercus lobata HOM05D005333 ORTHO05D005776 2.5e-29 132.1 103 65.0
CsaV3_1G030220 Cucumis sativus L. HOM05D005333 ORTHO05D005776 7.1e-29 130.6 104 64.4
Nn2g12046 Nelumbo nucifera HOM05D005333 ORTHO05D005776 7.1e-29 130.6 104 63.5
Cfa003386 Carpinus fangiana HOM05D005333 ORTHO05D005776 1.6e-28 129.4 101 65.3
GSVIVG01015545001 Vitis vinifera HOM05D005333 ORTHO05D005776 1.6e-28 129.4 104 61.5
CANSAT11G0814 Cannabis sativa HOM05D005333 ORTHO05D005776 6.0e-28 127.5 104 63.5
Dinv36517 Davidia involucrata HOM05D005333 ORTHO05D005776 7.9e-28 127.1 103 63.1
Manes.14G133000 Manihot esculenta HOM05D005333 ORTHO05D005776 1.0e-27 126.7 104 62.5
Potri.006G069000 Populus trichocarpa HOM05D005333 ORTHO05D005776 1.3e-27 126.3 104 60.6
ClCG06G011210 Citrullus lanatus HOM05D005333 ORTHO05D005776 2.3e-27 125.6 104 64.4
Duzib187G1708 Durio zibethinus HOM05D005333 ORTHO05D005776 2.3e-27 125.6 104 60.6
TWI34G1084 Tripterygium wilfordii HOM05D005333 ORTHO05D005776 3.0e-27 125.2 104 61.5
Prupe.7G244000 Prunus persica HOM05D005333 ORTHO05D005776 3.9e-27 124.8 110 60.9
Prupe.7G066500 Prunus persica HOM05D005333 ORTHO05D005776 5.1e-27 124.4 110 60.9
CiPaw.03G244900 Carya illinoinensis HOM05D005333 ORTHO05D005776 1.5e-26 122.9 104 61.5
AUR62013349 Chenopodium quinoa HOM05D005333 ORTHO05D005776 1.5e-26 122.9 107 58.9
Thecc.09G127500 Theobroma cacao HOM05D005333 ORTHO05D005776 1.5e-26 122.9 104 60.6
Atru.chr1.953 Acer truncatum HOM05D005333 ORTHO05D005776 1.9e-26 122.5 104 63.5
MD15G1172100 Malus domestica HOM05D005333 ORTHO05D005776 3.3e-26 121.7 110 61.8
RcHm_v2.0_Chr2g0088271 Rosa chinensis HOM05D005333 ORTHO05D005776 4.3e-26 121.3 107 58.9
Hma1.2p1_0018F.1_g012330 Hydrangea macrophylla HOM05D005333 ORTHO05D005776 9.6e-26 120.2 104 59.6
Sed0012264 Sechium edule HOM05D005333 ORTHO05D005776 9.6e-26 120.2 104 62.5
FvH4_1g03150 Fragaria vesca HOM05D005333 ORTHO05D005776 1.3e-25 119.8 104 57.7
FAN19G1630 Fragaria x ananassa HOM05D005333 ORTHO05D005776 1.3e-25 119.8 104 57.7
AUR62011139 Chenopodium quinoa HOM05D005333 ORTHO05D005776 1.6e-25 119.4 107 57.9
Cpa.g.sc46.7 Carica papaya HOM05D005333 ORTHO05D005776 2.1e-25 119.0 104 60.6
Ciclev10010005m.g Citrus clementina HOM05D005333 ORTHO05D005776 3.7e-25 118.2 105 61.0
Gohir.A06G055500 Gossypium hirsutum HOM05D005333 ORTHO05D005776 3.7e-25 118.2 105 59.0
Gorai.010G063500 Gossypium raimondii HOM05D005333 ORTHO05D005776 3.7e-25 118.2 105 59.0
Haze_25566 Corylus avellana HOM05D005333 ORTHO05D005776 4.8e-25 117.9 95 62.1
DCAR_014887 Daucus carota HOM05D005333 ORTHO05D005776 4.8e-25 117.9 104 61.5
Duzib168G0900 Durio zibethinus HOM05D005333 ORTHO05D005776 4.8e-25 117.9 104 59.6
vmacro20565 Vaccinium macrocarpon HOM05D005333 ORTHO05D005776 4.8e-25 117.9 98 60.2
Eucgr.C01196 Eucalyptus grandis HOM05D005333 ORTHO05D005776 6.2e-25 117.5 100 56.0
FAN26G1318 Fragaria x ananassa HOM05D005333 ORTHO05D005776 1.4e-24 116.3 103 56.3
Aqoxy7G03689 Aquilegia oxysepala HOM05D005333 ORTHO05D005776 1.8e-24 115.9 98 62.2
EL10Ac8g18671 Beta vulgaris HOM05D005333 ORTHO05D005776 1.8e-24 115.9 104 58.7
COL.COLO4_35113 Corchorus olitorius HOM05D005333 ORTHO05D005776 1.8e-24 115.9 154 43.5
MD02G1030500 Malus domestica HOM05D005333 ORTHO05D005776 1.8e-24 115.9 107 59.8
Gohir.D06G054400 Gossypium hirsutum HOM05D005333 ORTHO05D005776 2.4e-24 115.5 105 58.1
Eucgr.C01530 Eucalyptus grandis HOM05D005333 ORTHO05D005776 4.1e-24 114.8 100 59.0
FAN28G2446 Fragaria x ananassa HOM05D000315 ORTHO05D001379 4.1e-24 114.8 103 55.3
Lj4g0022056 Lotus japonicus HOM05D005333 ORTHO05D005776 5.3e-24 114.4 101 59.4
Cc06_g08400 Coffea canephora HOM05D005333 ORTHO05D005776 9.0e-24 113.6 101 60.4
Rhsim03G0248400 Rhododendron simsii HOM05D005333 ORTHO05D005776 9.0e-24 113.6 106 59.4
PGR102G2059 Punica granatum HOM05D005333 ORTHO05D005776 1.5e-23 112.8 107 54.2
FAN23G1698 Fragaria x ananassa HOM05D005333 ORTHO05D005776 2.0e-23 112.5 126 50.0
SGA_v2.0_scaffold49G18402 Striga asiatica HOM05D005333 ORTHO05D005776 2.0e-23 112.5 107 55.1
Dinv41504 Davidia involucrata HOM05D005333 ORTHO05D005776 2.6e-23 112.1 95 60.0
Sc08g0006540 Simmondsia chinensis HOM05D005333 ORTHO05D005776 2.6e-23 112.1 105 57.1
SGA_v2.0_scaffold109G31056 Striga asiatica HOM05D005333 ORTHO05D005776 3.4e-23 111.7 105 57.1
arahy.Tifrunner.gnm1.ann1.83L7WY Arachis hypogaea HOM05D005333 ORTHO05D005776 7.6e-23 110.5 103 59.2
Hund09250 Selenicereus undatus HOM05D005333 ORTHO05D005776 1.0e-22 110.2 103 54.4
arahy.Tifrunner.gnm1.ann1.U3NP9C Arachis hypogaea HOM05D005333 ORTHO05D005776 1.3e-22 109.8 103 58.3
MELO3C010337.2 Cucumis melo HOM05D005333 ORTHO05D005776 1.3e-22 109.8 104 57.7
Lalb_Chr12g0197971 Lupinus albus HOM05D005333 ORTHO05D005776 3.8e-22 108.2 101 58.4
DCAR_020918 Daucus carota HOM05D005333 ORTHO05D005776 6.5e-22 107.5 101 56.4
Lsat_1_v5_gn_5_31321 Lactuca sativa HOM05D005333 ORTHO05D005776 6.5e-22 107.5 99 53.5
Psat4g038680 Pisum sativum HOM05D005333 ORTHO05D005776 6.5e-22 107.5 103 54.4
Nitab4.5_0006661g0010 Nicotiana tabacum HOM05D005333 ORTHO05D005776 8.4e-22 107.1 100 53.0
Lj4g0001981 Lotus japonicus HOM05D005333 ORTHO05D005776 1.1e-21 106.7 101 56.4
Migut.H01282 Erythranthe guttata HOM05D005333 ORTHO05D005776 1.9e-21 105.9 103 58.3
Medtr4g114610 Medicago truncatula HOM05D005333 ORTHO05D005776 1.9e-21 105.9 103 53.4
ECA246G0448 Erigeron canadensis HOM05D005333 ORTHO05D005776 2.5e-21 105.5 100 53.0
VMungo1215G0455 Vigna mungo HOM05D005333 ORTHO05D005776 4.2e-21 104.8 97 54.6
TPR.G26498 Trifolium pratense HOM05D005333 ORTHO05D005776 5.5e-21 104.4 103 52.4
Glyma.17G114100 Glycine max HOM05D005333 ORTHO05D005776 7.2e-21 104.0 98 57.1
Sopen07g004160 Solanum pennellii HOM05D005333 ORTHO05D005776 7.2e-21 104.0 105 53.3
Nitab4.5_0000028g0370 Nicotiana tabacum HOM05D005333 ORTHO05D005776 9.3e-21 103.6 99 51.5
Phvul.003G165300 Phaseolus vulgaris HOM05D005333 ORTHO05D005776 9.3e-21 103.6 97 56.7
Solyc07g008270.3 Solanum lycopersicum HOM05D005333 ORTHO05D005776 9.3e-21 103.6 105 53.3
Actinidia40477 Actinidia chinensis HOM05D001011 ORTHO05D000851 2.7e-20 102.1 85 61.2
MSTRG.12252 Avicennia marina HOM05D005333 ORTHO05D005776 3.5e-20 101.7 102 52.9
Glyma.13G166400 Glycine max HOM05D005333 ORTHO05D005776 3.5e-20 101.7 98 55.1
MBI01_g15682_MAGBIO Magnolia biondii HOM05D005333 ORTHO05D005776 1.3e-19 99.8 81 64.2
PGSC0003DMG400019893 Solanum tuberosum HOM05D005333 ORTHO05D005776 1.3e-19 99.8 101 52.5
MBI01_g45309_MAGBIO Magnolia biondii HOM05D005333 ORTHO05D005776 2.3e-19 99.0 81 64.2
Peaxi162Scf00046g00622 Petunia axillaris HOM05D005333 ORTHO05D005776 3.0e-19 98.6 101 47.5
Oeu044201.1 Olea europaea HOM05D005333 ORTHO05D005776 5.1e-19 97.8 104 52.9
Lalb_Chr07g0179001 Lupinus albus HOM05D005333 ORTHO05D005776 1.1e-18 96.7 101 53.5
CDE10G0227 Ceratophyllum demersum HOM05D005333 ORTHO05D005776 1.9e-18 95.9 104 52.9
SGA_v2.0_scaffold3596G54365 Striga asiatica HOM05D005333 ORTHO05D005776 1.9e-18 95.9 97 50.5
CDE04G2910 Ceratophyllum demersum HOM05D005333 ORTHO05D005776 7.4e-18 94.0 104 49.0
Ciclev10010320m.g Citrus clementina HOM05D005333 ORTHO05D005776 7.4e-18 94.0 105 50.5
CDE10G0631 Ceratophyllum demersum HOM05D005333 ORTHO05D005776 1.4e-16 89.7 104 51.9
HanXRQChr06g0182851 Helianthus annuus HOM05D005333 ORTHO05D005776 3.1e-16 88.6 96 46.9
Hma1.2p1_0931F.1_g238060 Hydrangea macrophylla HOM05D005333 ORTHO05D005776 4.1e-16 88.2 53 79.2
unitig_748.g8609 Utricularia gibba HOM05D005333 ORTHO05D005776 4.1e-16 88.2 102 50.0
Rhsim01G0068900 Rhododendron simsii HOM05D005333 ORTHO05D005776 5.3e-16 87.8 103 49.5
Nn2g12039 Nelumbo nucifera HOM05D005333 ORTHO05D005776 6.9e-16 87.4 50 78.0
SalBow6G5031 Salvia bowleyana HOM05D005333 ORTHO05D005776 2.0e-15 85.9 46 82.6
MD05G1026100 Malus domestica HOM05D005333 ORTHO05D005776 3.4e-15 85.1 55 72.7
Sabra18G0111200 Salix brachista HOM05D002758 ORTHO05D005776 7.7e-15 84.0 108 47.2
Atru.chr7.1705 Acer truncatum HOM05D006080 ORTHO05D007382 6.5e-14 80.9 50 76.0
AL5G13030 Arabidopsis lyrata HOM05D005333 ORTHO05D005776 1.4e-13 79.7 55 74.5
AagrBONN_evm.TU.Sc2ySwM_344.103 Anthoceros agrestis HOM05D005333 ORTHO05D005776 7.2e-13 77.4 103 45.6
CBR_g19308 Chara braunii HOM05D005333 ORTHO05D005776 3.6e-12 75.1 113 45.1
Pp3c15_5230 Physcomitrium patens HOM05D005333 ORTHO05D005776 3.6e-12 75.1 90 47.8
AagrBONN_evm.TU.Sc2ySwM_344.112 Anthoceros agrestis HOM05D005333 ORTHO05D005776 1.4e-11 73.2 45 73.3
Actinidia21980 Actinidia chinensis HOM05D001011 ORTHO05D005776 8.8e-11 70.5 79 48.1
Zm00001eb212180 Zea mays HOM05D005333 ORTHO05D005776 1.5e-10 69.7 102 42.2
Mapoly0008s0076 Marchantia polymorpha HOM05D005333 ORTHO05D005776 2.0e-10 69.3 44 61.4
Os03g0811800 Oryza sativa ssp. japonica HOM05D005333 ORTHO05D005776 3.3e-10 68.6 98 39.8
PRCOL_00005826 Prasinoderma coloniale HOM05D005333 ORTHO05D005776 1.7e-09 66.2 47 55.3
Zm00001eb103590 Zea mays HOM05D001170 ORTHO05D006602 6.3e-09 64.3 43 65.1
SMO116G0310 Selaginella moellendorffii HOM05D005333 ORTHO05D005776 3.1e-08 62.0 43 62.8
SMO197G0073 Selaginella moellendorffii HOM05D005333 ORTHO05D005776 6.9e-08 60.8 43 62.8
ATR0618G145 Amborella trichopoda HOM05D005333 ORTHO05D005776 3.4e-07 58.5 45 60.0
Zm00001eb091680 Zea mays HOM05D001170 ORTHO05D006602 3.4e-07 58.5 43 62.8
Zm00001eb091690 Zea mays HOM05D001170 ORTHO05D006602 3.4e-07 58.5 43 62.8
ATCG00760 Arabidopsis thaliana HOM05D005333 ORTHO05D005776 5.9e-07 57.8 38 65.8
BolC7t41709H Brassica oleracea HOM05D005333 ORTHO05D005776 5.9e-07 57.8 38 65.8
BolSC29t60528H Brassica oleracea HOM05D005333 ORTHO05D005776 5.9e-07 57.8 38 65.8
BolSC29t60609H Brassica oleracea HOM05D005333 ORTHO05D005776 5.9e-07 57.8 38 65.8
BolSC35t60669H Brassica oleracea HOM05D005333 ORTHO05D005776 5.9e-07 57.8 38 65.8
BolSC35t60730H Brassica oleracea HOM05D005333 ORTHO05D005776 5.9e-07 57.8 38 65.8
BraA06t25383Z Brassica rapa HOM05D005333 ORTHO05D005776 5.9e-07 57.8 38 65.8
BraSC103t45446Z Brassica rapa HOM05D005333 ORTHO05D005776 5.9e-07 57.8 38 65.8
BraSC138t45554Z Brassica rapa HOM05D005333 ORTHO05D005776 5.9e-07 57.8 38 65.8
BraSC143t45636Z Brassica rapa HOM05D005333 ORTHO05D005776 5.9e-07 57.8 38 65.8
BraSC58t46440Z Brassica rapa HOM05D005333 ORTHO05D005776 5.9e-07 57.8 38 65.8
BraSC58t46501Z Brassica rapa HOM05D005333 ORTHO05D005776 5.9e-07 57.8 38 65.8
BraSC59t46571Z Brassica rapa HOM05D005333 ORTHO05D005776 5.9e-07 57.8 38 65.8
DCAR_032519 Daucus carota HOM05D005333 ORTHO05D005776 5.9e-07 57.8 38 65.8
FAN10G1907 Fragaria x ananassa HOM05D002824 ORTHO05D005776 5.9e-07 57.8 38 65.8
PSO548G0025 Papaver somniferum HOM05D005333 ORTHO05D005776 5.9e-07 57.8 38 65.8
PGR111G0044 Punica granatum HOM05D005333 ORTHO05D005776 5.9e-07 57.8 38 65.8
COL.COLO4_00391 Corchorus olitorius HOM05D006856 ORTHO05D008513 1.0e-06 57.0 38 68.4
CARHR282240 Cardamine hirsuta HOM05D000964 ORTHO05D003870 2.9e-06 55.5 37 64.9
Gorai.009G350300 Gossypium raimondii HOM05D005333 ORTHO05D005776 2.9e-06 55.5 38 63.2
Solyc12g035850.1 Solanum lycopersicum HOM05D000216 ORTHO05D004083 2.9e-06 55.5 38 65.8


User provided reference genes

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