Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT5G19950 Arabidopsis thaliana HOM05D006752 ORTHO05D008597 2.0e-229 798.9 421 100.0
AL6G31480 Arabidopsis lyrata HOM05D006752 ORTHO05D008597 4.8e-207 724.5 423 91.7
Carub.0006s1832 Capsella rubella HOM05D006752 ORTHO05D008597 3.2e-195 685.3 425 85.4
Thhalv10013545m.g Eutrema salsugineum HOM05D006752 ORTHO05D008597 6.3e-191 671.0 427 83.8
Sp6g24430 Schrenkiella parvula HOM05D006752 ORTHO05D008597 4.5e-189 664.8 426 83.6
CARHR192900 Cardamine hirsuta HOM05D006752 ORTHO05D008597 2.9e-188 662.1 425 83.5
A10p19780 Brassica napus HOM05D006752 ORTHO05D008597 5.3e-174 614.8 424 78.3
BraA10t44054Z Brassica rapa HOM05D006752 ORTHO05D008597 5.3e-174 614.8 424 78.3
BolC9t58477H Brassica oleracea HOM05D006752 ORTHO05D008597 2.6e-173 612.5 423 77.8
BcaC04g19401 Brassica carinata HOM05D006752 ORTHO05D008597 4.5e-173 611.7 423 77.8
C09p56100 Brassica napus HOM05D006752 ORTHO05D008597 4.5e-173 611.7 423 77.8
BcaB08g36551 Brassica carinata HOM05D006752 ORTHO05D008597 2.7e-162 575.9 420 77.1
Aa31LG8G9350 Aethionema arabicum HOM05D006752 ORTHO05D008597 7.3e-139 498.0 428 68.7
THA.LOC104815109 Tarenaya hassleriana HOM05D006752 ORTHO05D008597 5.4e-126 455.3 426 58.9
Atru.chr7.1279 Acer truncatum HOM05D006752 ORTHO05D008597 3.9e-92 342.8 427 46.8
CANSAT56G2958 Cannabis sativa HOM05D006752 ORTHO05D008597 9.0e-89 331.6 421 46.8
FvH4_1g04220 Fragaria vesca HOM05D006752 ORTHO05D008597 9.0e-89 331.6 410 47.6
FAN19G2061 Fragaria x ananassa HOM05D006752 ORTHO05D008597 9.0e-89 331.6 410 47.8
FAN28G1533 Fragaria x ananassa HOM05D006752 ORTHO05D008597 9.0e-89 331.6 414 46.4
Prupe.7G235200 Prunus persica HOM05D006752 ORTHO05D008597 1.5e-88 330.9 428 46.3
FAN26G3101 Fragaria x ananassa HOM05D006752 ORTHO05D008597 1.0e-87 328.2 415 45.8
CSS0021299 Camellia sinensis var. sinensis HOM05D006752 ORTHO05D008597 3.2e-86 323.2 424 46.2
Nitab4.5_0001164g0060 Nicotiana tabacum HOM05D006752 ORTHO05D008597 5.7e-83 312.4 416 44.5
Nitab4.5_0005520g0050 Nicotiana tabacum HOM05D006752 ORTHO05D008597 5.7e-83 312.4 419 45.1
RcHm_v2.0_Chr2g0089761 Rosa chinensis HOM05D006752 ORTHO05D008597 2.8e-82 310.1 415 45.5
Nn8g39294 Nelumbo nucifera HOM05D006752 ORTHO05D008597 3.1e-81 306.6 405 44.7
GSVIVG01015454001 Vitis vinifera HOM05D006752 ORTHO05D008597 3.1e-81 306.6 403 44.9
MD02G1061400 Malus domestica HOM05D006752 ORTHO05D008597 5.3e-81 305.8 428 43.5
Thecc.09G116900 Theobroma cacao HOM05D006752 ORTHO05D008597 1.2e-80 304.7 406 44.8
CiPaw.04G167500 Carya illinoinensis HOM05D006752 ORTHO05D008597 2.2e-79 300.4 470 41.7
Actinidia20330 Actinidia chinensis HOM05D006752 ORTHO05D008597 3.2e-78 296.6 422 45.0
Ah.14g081300 Amaranthus hybridus HOM05D006752 ORTHO05D008597 4.2e-78 296.2 424 45.3
Gohir.A06G059800 Gossypium hirsutum HOM05D006752 ORTHO05D008597 7.1e-78 295.4 407 43.2
COL.COLO4_34948 Corchorus olitorius HOM05D006393 ORTHO05D008088 1.2e-77 294.7 397 46.1
Lalb_Chr11g0071961 Lupinus albus HOM05D006752 ORTHO05D008597 1.6e-77 294.3 407 44.0
PGSC0003DMG400020684 Solanum tuberosum HOM05D006752 ORTHO05D008597 2.1e-77 293.9 410 44.4
Gohir.D06G058000 Gossypium hirsutum HOM05D006752 ORTHO05D008597 2.7e-77 293.5 408 43.1
PGR142G0135 Punica granatum HOM05D006752 ORTHO05D008597 7.9e-77 292.0 416 44.5
vmacro20678 Vaccinium macrocarpon HOM05D006752 ORTHO05D008597 7.9e-77 292.0 390 44.9
Haze_25667 Corylus avellana HOM05D006752 ORTHO05D008597 1.3e-76 291.2 398 45.7
Gorai.010G068100 Gossypium raimondii HOM05D006752 ORTHO05D008597 1.8e-76 290.8 408 43.4
Solyc12g006710.3 Solanum lycopersicum HOM05D006752 ORTHO05D008597 1.8e-76 290.8 409 43.8
CAN.G377.33 Capsicum annuum HOM05D006752 ORTHO05D008597 2.3e-76 290.4 431 42.9
ClCG06G010500 Citrullus lanatus HOM05D006752 ORTHO05D008597 3.0e-76 290.0 407 44.0
Sopen12g002660 Solanum pennellii HOM05D006752 ORTHO05D008597 3.9e-76 289.7 409 44.0
Dinv41564 Davidia involucrata HOM05D006752 ORTHO05D008088 5.1e-76 289.3 384 47.4
EL10Ac8g18558 Beta vulgaris HOM05D006752 ORTHO05D008597 6.7e-76 288.9 424 43.9
Rhsim01G0090500 Rhododendron simsii HOM05D006752 ORTHO05D008597 6.7e-76 288.9 427 42.4
Duzib168G0331 Durio zibethinus HOM05D006752 ORTHO05D008597 8.7e-76 288.5 429 43.1
HanXRQChr10g0317451 Helianthus annuus HOM05D006752 ORTHO05D008597 1.1e-75 288.1 419 41.5
TWI34G0637 Tripterygium wilfordii HOM05D006752 ORTHO05D008597 1.1e-75 288.1 393 44.0
Cpa.g.sc23.163 Carica papaya HOM05D006752 ORTHO05D008597 2.8e-74 283.5 437 44.2
PSO782G3782 Papaver somniferum HOM05D006752 ORTHO05D008597 2.8e-74 283.5 408 44.1
Hund09171 Selenicereus undatus HOM05D006752 ORTHO05D008597 1.1e-73 281.6 380 42.9
Aqoxy7G01881 Aquilegia oxysepala HOM05D006752 ORTHO05D008597 1.4e-73 281.2 404 43.3
ECA234G0120 Erigeron canadensis HOM05D006752 ORTHO05D008597 1.4e-73 281.2 425 41.4
Glyma.06G211500 Glycine max HOM05D006752 ORTHO05D008597 1.4e-73 281.2 427 42.2
Cc06_g09220 Coffea canephora HOM05D006752 ORTHO05D008597 4.1e-73 279.6 424 42.0
Sed0015690 Sechium edule HOM05D006752 ORTHO05D008597 4.1e-73 279.6 402 42.3
Lj1g0009545 Lotus japonicus HOM05D006752 ORTHO05D008597 6.9e-73 278.9 469 42.4
Lj7C639G3 Lonicera japonica HOM05D006752 ORTHO05D008597 1.2e-72 278.1 453 41.3
Migut.J01179 Erythranthe guttata HOM05D006752 ORTHO05D008597 2.0e-72 277.3 424 40.6
VMungo1309G1199 Vigna mungo HOM05D006752 ORTHO05D008597 3.4e-72 276.6 423 41.4
DCAR_010437 Daucus carota HOM05D006752 ORTHO05D008597 5.9e-72 275.8 427 42.4
Phvul.009G200000 Phaseolus vulgaris HOM05D006752 ORTHO05D008597 1.0e-71 275.0 418 41.1
Manes.03G066500 Manihot esculenta HOM05D006752 ORTHO05D008597 1.7e-71 274.2 456 39.9
SGA_v2.0_scaffold229G43313 Striga asiatica HOM05D006752 ORTHO05D008597 1.7e-71 274.2 426 40.8
Sc08g0007050 Simmondsia chinensis HOM05D006752 ORTHO05D008597 2.9e-71 273.5 419 41.8
TAR383G0518 Trochodendron aralioides HOM05D004738 ORTHO05D006439 2.9e-71 273.5 417 41.5
ATR0815G047 Amborella trichopoda HOM05D006752 ORTHO05D008597 1.4e-70 271.2 422 39.8
QL02p086379 Quercus lobata HOM05D006752 ORTHO05D008597 2.5e-70 270.4 546 36.8
Sabra18G0063600 Salix brachista HOM05D006752 ORTHO05D008597 3.2e-70 270.0 481 39.3
Eucgr.C01084 Eucalyptus grandis HOM05D006752 ORTHO05D008597 7.9e-69 265.4 407 40.5
arahy.Tifrunner.gnm1.ann1.CJP391 Arachis hypogaea HOM05D006752 ORTHO05D008597 1.0e-68 265.0 430 39.5
Peaxi162Scf00984g00260 Petunia axillaris HOM05D006752 ORTHO05D008597 2.3e-68 263.8 421 44.2
Medtr2g050180 Medicago truncatula HOM05D006752 ORTHO05D008597 3.0e-68 263.5 435 40.7
Potri.018G073100 Populus trichocarpa HOM05D006752 ORTHO05D008597 6.7e-68 262.3 484 39.3
SalBow6G5676 Salvia bowleyana HOM05D006752 ORTHO05D008597 6.7e-68 262.3 434 40.8
arahy.Tifrunner.gnm1.ann1.TG1F9L Arachis hypogaea HOM05D006752 ORTHO05D008597 4.3e-67 259.6 446 38.1
Lsat_1_v5_gn_5_99240 Lactuca sativa HOM05D006752 ORTHO05D008597 2.8e-66 256.9 425 40.9
Os01g0178100 Oryza sativa ssp. japonica HOM05D006752 ORTHO05D008597 6.3e-66 255.8 425 39.1
MELO3C025306.2 Cucumis melo HOM05D006752 ORTHO05D008597 1.8e-65 254.2 460 37.4
MBI01_g13570_MAGBIO Magnolia biondii HOM05D006752 ORTHO05D008597 2.4e-65 253.8 467 38.3
Psat1g025400 Pisum sativum HOM05D006752 ORTHO05D008597 2.4e-65 253.8 440 40.2
CDE02G1475 Ceratophyllum demersum HOM05D006752 ORTHO05D008597 3.1e-65 253.4 358 42.2
TPR.G10362 Trifolium pratense HOM05D006752 ORTHO05D008597 1.3e-63 248.1 431 39.0
Oeu018257.1 Olea europaea HOM05D006752 ORTHO05D008597 6.1e-61 239.2 360 43.9
HPP92_008698 Vanilla planifolia HOM05D006752 ORTHO05D008597 6.1e-61 239.2 425 36.2
AUR62033416 Chenopodium quinoa HOM05D006752 ORTHO05D008597 6.7e-60 235.7 427 38.6
MSTRG.19609 Avicennia marina HOM05D006752 ORTHO05D008597 8.0e-53 212.2 423 37.4
Actinidia09396 Actinidia chinensis HOM05D006393 ORTHO05D008088 2.6e-51 207.2 395 39.7
Ca_05468_v3 Cicer arietinum L. HOM05D006752 ORTHO05D008597 3.3e-51 206.8 208 51.0
AUR62011040 Chenopodium quinoa HOM05D006393 ORTHO05D008088 1.1e-49 201.8 332 41.0
Hma1.2p1_0018F.1_g013060 Hydrangea macrophylla HOM05D006752 ORTHO05D008597 1.0e-47 195.3 181 55.2
SEGI_05783 Sequoiadendron giganteum HOM05D006752 ORTHO05D008597 6.8e-44 182.6 491 30.5
Sc08g0007030 Simmondsia chinensis HOM05D006752 ORTHO05D008597 1.4e-41 174.9 192 46.9
CsaV3_1G030960 Cucumis sativus L. HOM05D006752 ORTHO05D008597 1.2e-32 145.2 270 40.0
Mapoly0040s0028 Marchantia polymorpha HOM05D006752 ORTHO05D008597 2.8e-29 134.0 243 34.2
Pp3c9_1660 Physcomitrium patens HOM05D006752 ORTHO05D008597 6.1e-29 132.9 408 28.2
Pp3c9_1669 Physcomitrium patens HOM05D006752 ORTHO05D008597 6.1e-29 132.9 408 28.2
Cc08_g07650 Coffea canephora HOM05D006752 ORTHO05D008597 2.6e-27 127.5 117 55.6
MD00G1026200 Malus domestica HOM05D006752 ORTHO05D008597 1.2e-24 118.6 185 41.1
Zm00001eb336920 Zea mays HOM05D006752 ORTHO05D008597 3.1e-20 104.0 245 32.7
MD02G1041600 Malus domestica HOM05D006752 ORTHO05D008597 9.8e-19 99.0 83 57.8
Cre16.g653000 Chlamydomonas reinhardtii HOM05D006752 ORTHO05D008597 1.7e-18 98.2 411 30.4
CSS0016306 Camellia sinensis var. sinensis HOM05D006752 ORTHO05D008597 3.7e-18 97.1 120 47.5
Ca_30697_v3 Cicer arietinum L. HOM05D006752 ORTHO05D008597 8.3e-18 95.9 125 47.2
Sc08g0007040 Simmondsia chinensis HOM05D006752 ORTHO05D008597 5.4e-17 93.2 140 40.7
MD00G1027300 Malus domestica HOM05D006752 ORTHO05D008597 3.5e-16 90.5 70 60.0
CBR_g41660 Chara braunii HOM05D001740 ORTHO05D001468 5.0e-15 86.7 254 29.1
CSS0032277 Camellia sinensis var. sinensis HOM05D006752 ORTHO05D008597 2.5e-14 84.3 169 37.9
MD02G1041500 Malus domestica HOM05D006752 ORTHO05D008597 4.7e-13 80.1 77 51.9
MD02G1040800 Malus domestica HOM05D006752 ORTHO05D008597 1.2e-11 75.5 79 45.6
Cre17.g712450 Chlamydomonas reinhardtii HOM05D005415 ORTHO05D006242 2.2e-10 71.2 156 30.1
MCO09G826 Micromonas commoda HOM05D006752 ORTHO05D008597 2.9e-10 70.9 197 26.9
SMO173G0041 Selaginella moellendorffii HOM05D005415 ORTHO05D006242 6.4e-10 69.7 159 32.1
MD02G1038900 Malus domestica HOM05D006752 ORTHO05D008597 1.1e-09 68.9 147 35.4
SMO146G0204 Selaginella moellendorffii HOM05D005415 ORTHO05D006242 2.4e-09 67.8 172 31.4
HPP92_021694 Vanilla planifolia HOM05D005415 ORTHO05D006242 1.6e-08 65.1 180 30.0
Lj9C481T20 Lonicera japonica HOM05D005415 ORTHO05D006242 4.6e-08 63.5 253 25.7
CBR_g45436 Chara braunii HOM05D005415 ORTHO05D006242 6.0e-08 63.2 159 28.9
COL.COLO4_16633 Corchorus olitorius HOM05D005415 ORTHO05D006242 7.8e-08 62.8 186 28.5
FvH4_1g26610 Fragaria vesca HOM05D005415 ORTHO05D006242 7.8e-08 62.8 122 33.6
FAN19G3201 Fragaria x ananassa HOM05D005415 ORTHO05D006242 7.8e-08 62.8 122 33.6
HPP92_021709 Vanilla planifolia HOM05D005415 ORTHO05D006242 7.8e-08 62.8 180 29.4
AagrBONN_evm.TU.Sc2ySwM_117.2504 Anthoceros agrestis HOM05D005415 ORTHO05D006242 1.0e-07 62.4 178 29.2
MD10G1199900 Malus domestica HOM05D005140 ORTHO05D006288 2.3e-07 61.2 46 60.9
MD11G1046200 Malus domestica HOM05D006752 ORTHO05D008597 3.0e-07 60.8 70 48.6
ATR0582G259 Amborella trichopoda HOM05D005415 ORTHO05D006242 3.9e-07 60.5 172 27.9
PRCOL_00000625 Prasinoderma coloniale HOM05D005415 ORTHO05D006242 3.9e-07 60.5 101 36.6
FAN28G1156 Fragaria x ananassa HOM05D005415 ORTHO05D006242 6.6e-07 59.7 149 28.9
Os04g0391000 Oryza sativa ssp. japonica HOM05D005415 ORTHO05D006242 8.6e-07 59.3 153 28.8
SMO146G0239 Selaginella moellendorffii HOM05D005415 ORTHO05D006242 8.6e-07 59.3 269 24.5
FAN23G0140 Fragaria x ananassa HOM05D005415 ORTHO05D006242 1.1e-06 58.9 188 27.7
MD02G1041100 Malus domestica HOM05D006752 ORTHO05D008597 1.1e-06 58.9 68 47.1
SMO173G0006 Selaginella moellendorffii HOM05D005415 ORTHO05D006242 1.1e-06 58.9 269 24.2
Zm00001eb085270 Zea mays HOM05D005415 ORTHO05D006242 2.5e-06 57.8 151 29.8
TWI32G0100 Tripterygium wilfordii HOM05D006752 ORTHO05D008597 3.3e-06 57.4 101 38.6
Atru.chr6.1849 Acer truncatum HOM05D005415 ORTHO05D006242 7.3e-06 56.2 122 31.1
MD02G1040400 Malus domestica HOM05D006752 ORTHO05D008597 9.5e-06 55.8 69 43.5
Psat7g037120 Pisum sativum HOM05D005415 ORTHO05D006242 9.5e-06 55.8 259 25.5


User provided reference genes

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