Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT5G19855 Arabidopsis thaliana HOM05D003890 ORTHO05D004514 9.8e-115 416.8 204 100.0
AL6G31380 Arabidopsis lyrata HOM05D003890 ORTHO05D004514 1.0e-108 396.7 200 96.0
Carub.0006s1821 Capsella rubella HOM05D003890 ORTHO05D004514 3.9e-103 378.3 200 92.0
C03p11250 Brassica napus HOM05D003890 ORTHO05D004514 8.1e-93 344.0 203 82.8
BcaB01g04825 Brassica carinata HOM05D003890 ORTHO05D004514 2.3e-92 342.4 203 82.3
A03p09680 Brassica napus HOM05D003890 ORTHO05D004514 2.3e-92 342.4 203 81.8
BolC3t13596H Brassica oleracea HOM05D003890 ORTHO05D004514 2.3e-92 342.4 203 82.3
BcaB08g36566 Brassica carinata HOM05D003890 ORTHO05D004514 3.7e-90 335.1 204 80.9
BNapus_Darmor_BZH_scaffold_38p02060 Brassica napus HOM05D003890 ORTHO05D004514 6.4e-90 334.3 203 82.3
BraA03t10284Z Brassica rapa HOM05D003890 ORTHO05D004514 1.9e-89 332.8 217 76.5
BcaC03g13717 Brassica carinata HOM05D003890 ORTHO05D004514 2.4e-89 332.4 203 81.8
BcaB01g04844 Brassica carinata HOM05D003890 ORTHO05D004514 5.4e-89 331.3 203 81.3
CARHR193020 Cardamine hirsuta HOM05D003890 ORTHO05D004514 7.8e-88 327.4 187 84.5
BolC2t06986H Brassica oleracea HOM05D003890 ORTHO05D004514 8.6e-87 323.9 214 77.6
BraA02t05537Z Brassica rapa HOM05D003890 ORTHO05D004514 1.1e-86 323.6 216 76.9
A02p05850 Brassica napus HOM05D003890 ORTHO05D004514 7.3e-86 320.9 225 73.8
Aa31LG4G8640 Aethionema arabicum HOM05D003890 ORTHO05D004514 1.7e-79 299.7 204 74.5
THA.LOC104807531 Tarenaya hassleriana HOM05D003890 ORTHO05D004514 5.6e-78 294.7 211 70.1
Thhalv10015929m.g Eutrema salsugineum HOM05D003890 ORTHO05D004514 8.1e-77 290.8 202 73.3
THA.LOC104811066 Tarenaya hassleriana HOM05D003890 ORTHO05D004514 1.9e-73 279.6 209 68.4
Duzib170G0856 Durio zibethinus HOM05D003890 ORTHO05D004514 7.3e-70 267.7 224 60.7
Ciclev10016574m.g Citrus clementina HOM05D003890 ORTHO05D004514 1.3e-69 266.9 223 61.9
Duzib150G1364 Durio zibethinus HOM05D003890 ORTHO05D004514 2.1e-69 266.2 224 60.7
Thecc.09G233900 Theobroma cacao HOM05D003890 ORTHO05D004514 4.0e-68 261.9 222 59.5
TAR636G2753 Trochodendron aralioides HOM05D003890 ORTHO05D004514 3.4e-67 258.8 222 60.4
Glyma.18G070500 Glycine max HOM05D003890 ORTHO05D004514 4.4e-67 258.5 218 60.1
QL01p004686 Quercus lobata HOM05D003890 ORTHO05D004514 9.9e-67 257.3 222 59.9
Sabra16G0157800 Salix brachista HOM05D003890 ORTHO05D004514 1.7e-66 256.5 221 57.9
Gohir.D09G111000 Gossypium hirsutum HOM05D003890 ORTHO05D004514 2.2e-66 256.1 202 63.4
Atru.chr3.2715 Acer truncatum HOM05D003890 ORTHO05D004514 3.8e-66 255.4 218 60.1
Gohir.D05G072300 Gossypium hirsutum HOM05D003890 ORTHO05D004514 4.9e-66 255.0 224 58.5
Gorai.009G073300 Gossypium raimondii HOM05D003890 ORTHO05D004514 4.9e-66 255.0 224 58.5
Potri.001G258100 Populus trichocarpa HOM05D003890 ORTHO05D004514 4.9e-66 255.0 221 59.3
Glyma.08G335500 Glycine max HOM05D003890 ORTHO05D004514 6.4e-66 254.6 223 58.3
Gorai.006G128600 Gossypium raimondii HOM05D003890 ORTHO05D004514 8.4e-66 254.2 202 63.4
CiPaw.13G160900 Carya illinoinensis HOM05D003890 ORTHO05D004514 1.1e-65 253.8 222 59.5
Gohir.A05G069400 Gossypium hirsutum HOM05D003890 ORTHO05D004514 1.1e-65 253.8 223 58.3
TAR633G1481 Trochodendron aralioides HOM05D003890 ORTHO05D004514 1.1e-65 253.8 222 59.5
Aqoxy2G00137 Aquilegia oxysepala HOM05D003890 ORTHO05D004514 1.4e-65 253.4 212 60.8
Gohir.A09G114300 Gossypium hirsutum HOM05D003890 ORTHO05D004514 1.4e-65 253.4 202 62.4
Psat5g163000 Pisum sativum HOM05D003890 ORTHO05D004514 1.4e-65 253.4 218 57.3
Lj6g0021955 Lotus japonicus HOM05D003890 ORTHO05D004514 1.9e-65 253.1 220 58.6
Sabra09G0038800 Salix brachista HOM05D003890 ORTHO05D004514 1.9e-65 253.1 217 60.4
COL.COLO4_07583 Corchorus olitorius HOM05D003890 ORTHO05D004514 2.4e-65 252.7 225 57.8
Cpa.g.sc84.53 Carica papaya HOM05D003890 ORTHO05D004514 3.2e-65 252.3 218 60.6
Dinv36258 Davidia involucrata HOM05D003890 ORTHO05D004514 4.2e-65 251.9 218 60.6
DCAR_002072 Daucus carota HOM05D003890 ORTHO05D004514 7.1e-65 251.1 209 59.3
Hma1.2p1_0027F.1_g017050 Hydrangea macrophylla HOM05D003890 ORTHO05D004514 9.3e-65 250.8 217 61.8
CiPaw.14G119100 Carya illinoinensis HOM05D003890 ORTHO05D004514 2.7e-64 249.2 222 59.9
Haze_23135 Corylus avellana HOM05D000807 ORTHO05D000662 3.5e-64 248.8 221 57.5
Lalb_Chr18g0050551 Lupinus albus HOM05D003890 ORTHO05D004514 4.6e-64 248.4 214 59.8
Manes.14G002800 Manihot esculenta HOM05D003890 ORTHO05D004514 6.0e-64 248.1 224 58.0
Ca_14881_v3 Cicer arietinum L. HOM05D003890 ORTHO05D004514 7.9e-64 247.7 217 57.1
ClCG03G013240 Citrullus lanatus HOM05D003890 ORTHO05D004514 7.9e-64 247.7 217 57.1
Potri.009G053300 Populus trichocarpa HOM05D003890 ORTHO05D004514 1.0e-63 247.3 211 59.2
Phvul.006G062600 Phaseolus vulgaris HOM05D003890 ORTHO05D004514 1.3e-63 246.9 219 56.6
PGR102G1724 Punica granatum HOM05D003890 ORTHO05D004514 1.7e-63 246.5 231 55.4
TPR.G30124 Trifolium pratense HOM05D003890 ORTHO05D004514 2.3e-63 246.1 210 57.6
CsaV3_1G042820 Cucumis sativus L. HOM05D003890 ORTHO05D004514 3.0e-63 245.7 218 56.0
arahy.Tifrunner.gnm1.ann1.5L0PCQ Arachis hypogaea HOM05D003890 ORTHO05D004514 3.9e-63 245.4 206 60.2
Phvul.008G283400 Phaseolus vulgaris HOM05D003890 ORTHO05D004514 3.9e-63 245.4 205 61.0
Manes.06G164200 Manihot esculenta HOM05D003890 ORTHO05D004514 6.6e-63 244.6 222 57.2
Sed0019717 Sechium edule HOM05D003890 ORTHO05D004514 1.1e-62 243.8 218 56.4
VMungo0540G2384 Vigna mungo HOM05D003890 ORTHO05D004514 1.1e-62 243.8 219 57.1
Nn2g15369 Nelumbo nucifera HOM05D003890 ORTHO05D004514 1.9e-62 243.0 223 55.6
BcaC04g19383 Brassica carinata HOM05D003890 ORTHO05D004514 2.5e-62 242.7 198 67.7
Cfa009770 Carpinus fangiana HOM05D003890 ORTHO05D004514 2.5e-62 242.7 222 56.3
Rhsim01G0191800 Rhododendron simsii HOM05D003890 ORTHO05D004514 2.5e-62 242.7 208 60.1
Dinv09354 Davidia involucrata HOM05D003890 ORTHO05D004514 5.6e-62 241.5 224 55.8
FvH4_3g28850 Fragaria vesca HOM05D003890 ORTHO05D004514 7.4e-62 241.1 217 53.9
FAN16G3317 Fragaria x ananassa HOM05D003890 ORTHO05D004514 7.4e-62 241.1 217 53.9
Actinidia06907 Actinidia chinensis HOM05D003890 ORTHO05D004514 9.6e-62 240.7 210 56.7
FAN21G3604 Fragaria x ananassa HOM05D003890 ORTHO05D004514 1.6e-61 240.0 217 53.5
Hund22030 Selenicereus undatus HOM05D003890 ORTHO05D004514 1.6e-61 240.0 206 61.7
Prupe.4G249500 Prunus persica HOM05D003890 ORTHO05D004514 2.8e-61 239.2 223 56.5
FAN25G3809 Fragaria x ananassa HOM05D003890 ORTHO05D004514 3.6e-61 238.8 217 53.5
RcHm_v2.0_Chr5g0052051 Rosa chinensis HOM05D003890 ORTHO05D004514 3.6e-61 238.8 215 56.7
Actinidia16334 Actinidia chinensis HOM05D003890 ORTHO05D004514 4.8e-61 238.4 210 56.7
FAN11G0759 Fragaria x ananassa HOM05D003890 ORTHO05D004514 6.2e-61 238.0 217 53.5
Medtr3g061630 Medicago truncatula HOM05D003890 ORTHO05D004514 6.2e-61 238.0 220 54.1
MD11G1193100 Malus domestica HOM05D003890 ORTHO05D004514 1.4e-60 236.9 220 57.3
C09p56300 Brassica napus HOM05D003890 ORTHO05D004514 1.8e-60 236.5 214 63.1
BolC9t58499H Brassica oleracea HOM05D003890 ORTHO05D004514 1.8e-60 236.5 214 63.1
HanXRQChr02g0056201 Helianthus annuus HOM05D003890 ORTHO05D004514 4.0e-60 235.3 212 58.0
MBI02_g05665_MAGBIO Magnolia biondii HOM05D003890 ORTHO05D004514 6.9e-60 234.6 221 57.5
Lj1A330T24 Lonicera japonica HOM05D003890 ORTHO05D004514 9.0e-60 234.2 208 58.7
PSO384G2797 Papaver somniferum HOM05D003890 ORTHO05D004514 9.0e-60 234.2 219 54.8
Sp6g24540 Schrenkiella parvula HOM05D003890 ORTHO05D004514 9.0e-60 234.2 203 64.0
Lsat_1_v5_gn_6_47921 Lactuca sativa HOM05D003890 ORTHO05D004514 1.2e-59 233.8 204 59.8
MD03G1175000 Malus domestica HOM05D003890 ORTHO05D004514 1.2e-59 233.8 220 55.9
Hund07506 Selenicereus undatus HOM05D003890 ORTHO05D004514 1.2e-59 233.8 223 56.5
MBI04_g36752_MAGBIO Magnolia biondii HOM05D003890 ORTHO05D004514 1.5e-59 233.4 227 55.5
Solyc11g065740.2 Solanum lycopersicum HOM05D003890 ORTHO05D004514 2.0e-59 233.0 210 54.8
TWI60G0796 Tripterygium wilfordii HOM05D003890 ORTHO05D004514 3.4e-59 232.3 208 58.2
TWI32G0323 Tripterygium wilfordii HOM05D003890 ORTHO05D004514 4.5e-59 231.9 209 57.9
AUR62019304 Chenopodium quinoa HOM05D003890 ORTHO05D004514 7.6e-59 231.1 219 54.3
Sopen11g025500 Solanum pennellii HOM05D003890 ORTHO05D004514 9.9e-59 230.7 210 54.3
Glyma.14G009900 Glycine max HOM05D003890 ORTHO05D004514 1.3e-58 230.3 193 61.7
Ah.04g161930 Amaranthus hybridus HOM05D003890 ORTHO05D004514 2.2e-58 229.6 221 53.4
CANSAT56G1539 Cannabis sativa HOM05D003890 ORTHO05D004514 2.2e-58 229.6 226 53.1
SGA_v2.0_scaffold8G04590 Striga asiatica HOM05D003890 ORTHO05D004514 2.2e-58 229.6 213 56.3
VMungo0647G1030 Vigna mungo HOM05D003890 ORTHO05D004514 2.9e-58 229.2 205 59.0
Lsat_1_v5_gn_1_66000 Lactuca sativa HOM05D003890 ORTHO05D004514 3.8e-58 228.8 212 55.7
Oeu016684.1 Olea europaea HOM05D003890 ORTHO05D004514 4.9e-58 228.4 210 54.8
ATR0332G008 Amborella trichopoda HOM05D003890 ORTHO05D004514 8.4e-58 227.6 214 54.2
Lalb_Chr04g0247401 Lupinus albus HOM05D003890 ORTHO05D004514 8.4e-58 227.6 197 59.4
Lalb_Chr04g0247641 Lupinus albus HOM05D003890 ORTHO05D004514 8.4e-58 227.6 197 59.4
Oeu001480.1 Olea europaea HOM05D003890 ORTHO05D004514 1.1e-57 227.3 210 54.3
ECA240G2592 Erigeron canadensis HOM05D003890 ORTHO05D004514 1.4e-57 226.9 214 54.7
PGSC0003DMG400007341 Solanum tuberosum HOM05D003890 ORTHO05D004514 2.4e-57 226.1 210 53.3
MELO3C014593.2 Cucumis melo HOM05D003890 ORTHO05D004514 4.2e-57 225.3 214 55.6
EL10Ac4g10247 Beta vulgaris HOM05D003890 ORTHO05D004514 5.5e-57 224.9 219 52.1
CsaV3_4G024270 Cucumis sativus L. HOM05D003890 ORTHO05D004514 1.2e-56 223.8 215 54.4
CAN.G599.2 Capsicum annuum HOM05D003890 ORTHO05D004514 1.6e-56 223.4 206 55.8
ClCG02G023230 Citrullus lanatus HOM05D003890 ORTHO05D004514 2.7e-56 222.6 222 53.6
Eucgr.J00766 Eucalyptus grandis HOM05D003890 ORTHO05D004514 7.9e-56 221.1 204 56.9
ECA233G4357 Erigeron canadensis HOM05D003890 ORTHO05D004514 1.3e-55 220.3 205 55.6
GSVIVG01025257001 Vitis vinifera HOM05D003890 ORTHO05D004514 1.8e-55 219.9 164 65.2
Zm00001eb212460 Zea mays HOM05D003890 ORTHO05D004514 2.3e-55 219.5 142 71.8
PGR119G1229 Punica granatum HOM05D003890 ORTHO05D004514 3.0e-55 219.2 216 53.7
Cc10_g03220 Coffea canephora HOM05D003890 ORTHO05D004514 3.9e-55 218.8 215 54.0
Nitab4.5_0002741g0130 Nicotiana tabacum HOM05D003890 ORTHO05D004514 1.9e-54 216.5 219 51.1
Nitab4.5_0001587g0060 Nicotiana tabacum HOM05D003890 ORTHO05D004514 2.5e-54 216.1 220 52.3
MSTRG.21378 Avicennia marina HOM05D003890 ORTHO05D004514 3.3e-54 215.7 212 51.4
Cc02_g28010 Coffea canephora HOM05D003890 ORTHO05D004514 3.3e-54 215.7 205 52.7
GSVIVG01032095001 Vitis vinifera HOM05D003890 ORTHO05D004514 3.3e-54 215.7 146 67.8
Sed0005000 Sechium edule HOM05D003890 ORTHO05D004514 4.3e-54 215.3 203 54.2
Migut.N02317 Erythranthe guttata HOM05D003890 ORTHO05D004514 9.6e-54 214.2 207 56.5
CDE02G1666 Ceratophyllum demersum HOM05D003890 ORTHO05D004514 2.1e-53 213.0 160 65.0
vmacro12718 Vaccinium macrocarpon HOM05D003890 ORTHO05D004514 8.1e-53 211.1 240 51.7
Migut.D00602 Erythranthe guttata HOM05D003890 ORTHO05D004514 6.9e-52 208.0 209 54.5
DCAR_003214 Daucus carota HOM05D003890 ORTHO05D004514 1.5e-51 206.8 134 70.1
Peaxi162Scf00004g02340 Petunia axillaris HOM05D003890 ORTHO05D004514 2.6e-51 206.1 210 52.9
Os03g0807900 Oryza sativa ssp. japonica HOM05D003890 ORTHO05D004514 3.4e-51 205.7 171 59.6
MBI04_g40116_MAGBIO Magnolia biondii HOM05D003890 ORTHO05D004514 1.7e-50 203.4 238 48.3
arahy.Tifrunner.gnm1.ann1.HEYT23 Arachis hypogaea HOM05D003890 ORTHO05D004514 8.4e-50 201.1 207 52.7
MSTRG.17029 Avicennia marina HOM05D003890 ORTHO05D004514 8.4e-50 201.1 194 53.1
SGA_v2.0_scaffold3G01504 Striga asiatica HOM05D003890 ORTHO05D004514 8.4e-50 201.1 199 49.2
MSTRG.18426 Avicennia marina HOM05D003890 ORTHO05D004514 1.4e-49 200.3 210 50.5
Os07g0569600 Oryza sativa ssp. japonica HOM05D003890 ORTHO05D004514 4.2e-49 198.7 146 60.3
unitig_22.g6202 Utricularia gibba HOM05D003890 ORTHO05D004514 1.6e-48 196.8 197 52.8
HanXRQChr16g0524491 Helianthus annuus HOM05D003890 ORTHO05D004514 2.7e-48 196.1 194 54.6
Nn7g36206 Nelumbo nucifera HOM05D003890 ORTHO05D004514 2.7e-48 196.1 222 49.5
Zm00001eb324740 Zea mays HOM05D003890 ORTHO05D004514 2.7e-48 196.1 165 58.8
HPP92_024873 Vanilla planifolia HOM05D003890 ORTHO05D004514 2.3e-47 193.0 146 61.0
SalBow6G5214 Salvia bowleyana HOM05D003890 ORTHO05D004514 2.5e-46 189.5 201 50.2
Peaxi162Scf00953g00113 Petunia axillaris HOM05D003890 ORTHO05D004514 4.3e-46 188.7 210 49.0
SalBow6G3376 Salvia bowleyana HOM05D003890 ORTHO05D004514 4.3e-46 188.7 203 49.8
Solyc01g087190.4 Solanum lycopersicum HOM05D003890 ORTHO05D004514 5.7e-46 188.3 205 51.7
Sopen01g034250 Solanum pennellii HOM05D003890 ORTHO05D004514 9.6e-46 187.6 206 51.0
unitig_8.g2995 Utricularia gibba HOM05D003890 ORTHO05D004514 1.6e-45 186.8 218 46.8
MSTRG.28066 Avicennia marina HOM05D003890 ORTHO05D004514 2.8e-45 186.0 205 52.7
Nitab4.5_0001186g0010 Nicotiana tabacum HOM05D003890 ORTHO05D004514 1.1e-44 184.1 215 47.4
CAN.G1560.2 Capsicum annuum HOM05D003890 ORTHO05D004514 1.4e-44 183.7 205 48.8
Nitab4.5_0004290g0020 Nicotiana tabacum HOM05D003890 ORTHO05D004514 2.4e-44 183.0 213 47.4
MELO3C015193.2 Cucumis melo HOM05D003890 ORTHO05D004514 3.1e-44 182.6 182 50.5
PGSC0003DMG400006801 Solanum tuberosum HOM05D003890 ORTHO05D004514 1.2e-43 180.6 211 48.8
Eucgr.B03687 Eucalyptus grandis HOM05D003890 ORTHO05D004514 1.4e-41 173.7 189 51.3
Pp3c12_1270 Physcomitrium patens HOM05D003890 ORTHO05D004514 1.4e-41 173.7 127 61.4
Mapoly0069s0007 Marchantia polymorpha HOM05D003890 ORTHO05D004514 5.5e-41 171.8 173 48.6
Mapoly0002s0228 Marchantia polymorpha HOM05D003890 ORTHO05D004514 2.1e-40 169.9 152 50.0
SMO275G0040 Selaginella moellendorffii HOM05D003890 ORTHO05D004514 1.0e-39 167.5 123 61.0
arahy.Tifrunner.gnm1.ann1.13C5F2 Arachis hypogaea HOM05D003890 ORTHO05D004514 3.0e-39 166.0 211 47.9
Pp3c9_10480 Physcomitrium patens HOM05D003890 ORTHO05D004514 3.9e-39 165.6 150 50.7
AUR62000123 Chenopodium quinoa HOM05D003890 ORTHO05D004514 6.7e-39 164.9 219 44.7
HanXRQChr01g0018191 Helianthus annuus HOM05D003890 ORTHO05D004514 1.5e-38 163.7 208 42.8
AagrBONN_evm.TU.Sc2ySwM_228.2147 Anthoceros agrestis HOM05D003890 ORTHO05D004514 5.7e-38 161.8 165 49.7
Lsat_1_v5_gn_4_31621 Lactuca sativa HOM05D003890 ORTHO05D004514 1.8e-36 156.8 132 59.8
SEGI_02367 Sequoiadendron giganteum HOM05D003890 ORTHO05D004514 2.4e-36 156.4 128 54.7
arahy.Tifrunner.gnm1.ann1.V44IJD Arachis hypogaea HOM05D003890 ORTHO05D004514 4.5e-35 152.1 211 45.0
CBR_g21098 Chara braunii HOM05D003890 ORTHO05D004514 1.7e-34 150.2 152 46.1
Sc09g0000720 Simmondsia chinensis HOM05D003890 ORTHO05D004514 2.9e-34 149.4 149 54.4
Ah.06g194180 Amaranthus hybridus HOM05D003890 ORTHO05D004514 1.2e-32 144.1 260 35.8
CSS0039551 Camellia sinensis var. sinensis HOM05D003890 ORTHO05D004514 5.1e-31 138.7 92 66.3
arahy.Tifrunner.gnm1.ann1.11Y6U0 Arachis hypogaea HOM05D003890 ORTHO05D004514 4.8e-29 132.1 88 67.0
A10p19900 Brassica napus HOM05D003890 ORTHO05D004514 6.5e-26 121.7 58 94.8
BraA10t44065Z Brassica rapa HOM05D003890 ORTHO05D004514 6.3e-21 105.1 49 93.9
BcaC04g19382 Brassica carinata HOM05D000916 ORTHO05D008653 1.8e-20 103.6 52 92.3


User provided reference genes

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