Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT5G19710 Arabidopsis thaliana HOM05D000581 ORTHO05D015961 1.1e-57 226.5 115 100.0
Sp6g24670 Schrenkiella parvula HOM05D000581 ORTHO05D015961 1.6e-29 132.9 139 55.4
CARHR193190 Cardamine hirsuta HOM05D000581 ORTHO05D015961 1.5e-27 126.3 95 72.6
Carub.0006s1806 Capsella rubella HOM05D000581 ORTHO05D015961 2.4e-25 119.0 155 49.0
BNapus_Darmor_BZH_scaffold_38p02190 Brassica napus HOM05D000581 ORTHO05D015961 3.2e-22 108.6 128 50.8
A02p05760 Brassica napus HOM05D000581 ORTHO05D015961 5.5e-22 107.8 128 50.0
BraA02t05528Z Brassica rapa HOM05D000581 ORTHO05D015961 5.5e-22 107.8 128 50.0
Thhalv10015244m.g Eutrema salsugineum HOM05D000581 ORTHO05D015961 1.1e-19 100.1 71 74.6
BcaC03g13702 Brassica carinata HOM05D000581 ORTHO05D015961 2.8e-18 95.5 116 50.9
BcaB05g23032 Brassica carinata HOM05D000581 ORTHO05D015961 1.5e-11 73.2 103 45.6
Thecc.09G101500 Theobroma cacao HOM05D000581 ORTHO05D000412 1.7e-10 69.7 64 51.6
Thecc.09G101300 Theobroma cacao HOM05D000581 ORTHO05D000412 2.2e-10 69.3 64 51.6
Aqoxy7G01417 Aquilegia oxysepala HOM05D000581 ORTHO05D000412 8.2e-10 67.4 105 34.3
Carub.0003s1611 Capsella rubella HOM05D000581 ORTHO05D000412 3.1e-09 65.5 109 39.4
AL3G29140 Arabidopsis lyrata HOM05D000581 ORTHO05D000412 1.2e-08 63.5 109 38.5
AT3G16360 Arabidopsis thaliana HOM05D000581 ORTHO05D000412 1.2e-08 63.5 109 38.5
CARHR091570 Cardamine hirsuta HOM05D000581 ORTHO05D000412 1.5e-08 63.2 109 38.5
Aa31LG8G3500 Aethionema arabicum HOM05D000581 ORTHO05D000412 2.0e-08 62.8 109 37.6
Thhalv10021714m.g Eutrema salsugineum HOM05D000581 ORTHO05D000412 2.6e-08 62.4 109 37.6
Lj3g0019320 Lotus japonicus HOM05D000581 ORTHO05D000412 3.4e-08 62.0 59 54.2
TAR624G0712 Trochodendron aralioides HOM05D000581 ORTHO05D000412 3.4e-08 62.0 59 50.8
BcaB04g18897 Brassica carinata HOM05D000581 ORTHO05D000412 4.5e-08 61.6 109 36.7
Nn8g39077 Nelumbo nucifera HOM05D000581 ORTHO05D000412 5.9e-08 61.2 59 52.5
Sp3g14740 Schrenkiella parvula HOM05D000581 ORTHO05D000412 5.9e-08 61.2 109 36.7
BcaC05g28887 Brassica carinata HOM05D000581 ORTHO05D000412 7.7e-08 60.8 114 36.0
Rhsim08G0227400 Rhododendron simsii HOM05D000581 ORTHO05D000412 7.7e-08 60.8 63 47.6
TAR626G1761 Trochodendron aralioides HOM05D000581 ORTHO05D000412 1.0e-07 60.5 64 48.4
BcaC01g03823 Brassica carinata HOM05D000581 ORTHO05D000412 1.3e-07 60.1 109 35.8
Duzib168G0687 Durio zibethinus HOM05D000581 ORTHO05D000412 1.3e-07 60.1 60 46.7
Zm00001eb283590 Zea mays HOM05D000581 ORTHO05D000412 1.3e-07 60.1 62 43.5
TAR383G0489 Trochodendron aralioides HOM05D000581 ORTHO05D000412 1.7e-07 59.7 64 46.9
Nn6g35321 Nelumbo nucifera HOM05D000581 ORTHO05D000412 2.2e-07 59.3 59 47.5
Potri.001G189900 Populus trichocarpa HOM05D000581 ORTHO05D000412 2.2e-07 59.3 59 52.5
FAN20G0433 Fragaria x ananassa HOM05D000581 ORTHO05D000412 2.9e-07 58.9 100 37.0
VMungo0331G1806 Vigna mungo HOM05D000581 ORTHO05D000412 2.9e-07 58.9 64 46.9
Potri.006G236300 Populus trichocarpa HOM05D000581 ORTHO05D000412 3.8e-07 58.5 59 50.8
Prupe.1G178800 Prunus persica HOM05D000581 ORTHO05D000412 3.8e-07 58.5 109 33.0
PSO210G0449 Papaver somniferum HOM05D000581 ORTHO05D000412 5.0e-07 58.2 109 35.8
Eucgr.F03077 Eucalyptus grandis HOM05D000581 ORTHO05D000412 6.5e-07 57.8 64 46.9
FvH4_2g35290 Fragaria vesca HOM05D000581 ORTHO05D000412 6.5e-07 57.8 100 37.0
FAN15G3064 Fragaria x ananassa HOM05D000581 ORTHO05D000412 6.5e-07 57.8 100 37.0
FAN27G0340 Fragaria x ananassa HOM05D000581 ORTHO05D000412 6.5e-07 57.8 100 37.0
Glyma.08G201100 Glycine max HOM05D000581 ORTHO05D000412 6.5e-07 57.8 64 45.3
PSO210G5063 Papaver somniferum HOM05D000581 ORTHO05D000412 8.5e-07 57.4 109 35.8
Phvul.010G145400 Phaseolus vulgaris HOM05D000581 ORTHO05D000412 8.5e-07 57.4 64 45.3
COL.COLO4_34753 Corchorus olitorius HOM05D000581 ORTHO05D000412 1.1e-06 57.0 60 45.0
Zm00001eb153570 Zea mays HOM05D000581 ORTHO05D000412 1.1e-06 57.0 104 33.7
MELO3C030799.2 Cucumis melo HOM05D000581 ORTHO05D000412 1.4e-06 56.6 59 45.8
THA.LOC104805933 Tarenaya hassleriana HOM05D000581 ORTHO05D000412 1.4e-06 56.6 109 34.9
THA.LOC104817959 Tarenaya hassleriana HOM05D000581 ORTHO05D000412 1.4e-06 56.6 59 45.8
TWI34G1910 Tripterygium wilfordii HOM05D000581 ORTHO05D000412 1.4e-06 56.6 52 48.1
Actinidia32097 Actinidia chinensis HOM05D005013 ORTHO05D006005 1.9e-06 56.2 59 47.5
MSTRG.4751 Avicennia marina HOM05D000581 ORTHO05D000412 1.9e-06 56.2 59 47.5
BcaB06g25729 Brassica carinata HOM05D000581 ORTHO05D000412 1.9e-06 56.2 64 45.3
CDE08G1286 Ceratophyllum demersum HOM05D000581 ORTHO05D000412 1.9e-06 56.2 63 46.0
Cc04_g02570 Coffea canephora HOM05D000581 ORTHO05D000412 1.9e-06 56.2 59 44.1
CsaV3_3G023600 Cucumis sativus L. HOM05D000581 ORTHO05D000412 1.9e-06 56.2 59 45.8
Glyma.07G015600 Glycine max HOM05D000581 ORTHO05D000412 1.9e-06 56.2 64 43.8
Os05g0186100 Oryza sativa ssp. japonica HOM05D000581 ORTHO05D000412 1.9e-06 56.2 108 32.4
Sed0018850 Sechium edule HOM05D000581 ORTHO05D000412 1.9e-06 56.2 59 47.5
TPR.G26915 Trifolium pratense HOM05D000581 ORTHO05D000412 1.9e-06 56.2 64 45.3
ClCG00G003330 Citrullus lanatus HOM05D000581 ORTHO05D000412 2.5e-06 55.8 59 45.8
ClCG07G013310 Citrullus lanatus HOM05D000581 ORTHO05D000412 2.5e-06 55.8 59 45.8
DCAR_004461 Daucus carota HOM05D000581 ORTHO05D000412 2.5e-06 55.8 53 50.9
Lj2g0027097 Lotus japonicus HOM05D000581 ORTHO05D000412 2.5e-06 55.8 54 44.4
MD09G1203100 Malus domestica HOM05D000581 ORTHO05D000412 2.5e-06 55.8 109 31.2
CDE02G1795 Ceratophyllum demersum HOM05D000581 ORTHO05D000412 3.2e-06 55.5 62 46.8
DCAR_026351 Daucus carota HOM05D000581 ORTHO05D000412 3.2e-06 55.5 105 32.4
Medtr2g100880 Medicago truncatula HOM05D000581 ORTHO05D000412 3.2e-06 55.5 59 47.5
Medtr2g100900 Medicago truncatula HOM05D000581 ORTHO05D000412 3.2e-06 55.5 59 45.8
Oeu008304.1 Olea europaea HOM05D000581 ORTHO05D000412 3.2e-06 55.5 104 34.6
CsaV3_7G035290 Cucumis sativus L. HOM05D000581 ORTHO05D000412 4.2e-06 55.1 59 47.5
FAN14G1435 Fragaria x ananassa HOM05D000581 ORTHO05D000412 4.2e-06 55.1 84 39.3
Lalb_Chr24g0396161 Lupinus albus HOM05D000581 ORTHO05D000412 4.2e-06 55.1 59 44.1
QL05p020124 Quercus lobata HOM05D000581 ORTHO05D000412 4.2e-06 55.1 62 45.2
RcHm_v2.0_Chr2g0140511 Rosa chinensis HOM05D000581 ORTHO05D000412 4.2e-06 55.1 109 32.1
Sed0002879 Sechium edule HOM05D000581 ORTHO05D000412 4.2e-06 55.1 59 45.8
CSS0043734 Camellia sinensis var. sinensis HOM05D000581 ORTHO05D000412 5.5e-06 54.7 109 33.9
Gohir.A05G129200 Gossypium hirsutum HOM05D000581 ORTHO05D000412 5.5e-06 54.7 59 47.5
Gohir.D05G133900 Gossypium hirsutum HOM05D000581 ORTHO05D000412 5.5e-06 54.7 59 47.5
Gorai.009G137400 Gossypium raimondii HOM05D000581 ORTHO05D000412 5.5e-06 54.7 59 47.5
MBI01_g10134_MAGBIO Magnolia biondii HOM05D000581 ORTHO05D000412 5.5e-06 54.7 59 47.5
GSVIVG01016986001 Vitis vinifera HOM05D000581 ORTHO05D000412 5.5e-06 54.7 59 47.5
Atru.chr1.3522 Acer truncatum HOM05D000581 ORTHO05D000412 7.2e-06 54.3 59 44.1
Duzib235G0680 Durio zibethinus HOM05D000581 ORTHO05D000412 7.2e-06 54.3 59 47.5
FvH4_6g32380 Fragaria vesca HOM05D000581 ORTHO05D000412 7.2e-06 54.3 105 33.3
Psat5g295840 Pisum sativum HOM05D000581 ORTHO05D000412 7.2e-06 54.3 59 45.8
Psat5g296160 Pisum sativum HOM05D000581 ORTHO05D000412 7.2e-06 54.3 59 45.8
Prupe.7G220400 Prunus persica HOM05D000581 ORTHO05D000412 7.2e-06 54.3 59 45.8
Sc12g0009760 Simmondsia chinensis HOM05D000581 ORTHO05D000412 7.2e-06 54.3 109 32.1
Thecc.06G099900 Theobroma cacao HOM05D000581 ORTHO05D000412 7.2e-06 54.3 59 45.8
arahy.Tifrunner.gnm1.ann1.5X1YG2 Arachis hypogaea HOM05D000581 ORTHO05D000412 9.4e-06 53.9 91 37.4
arahy.Tifrunner.gnm1.ann1.R40G9H Arachis hypogaea HOM05D000581 ORTHO05D000412 9.4e-06 53.9 91 37.4
Ca_23261_v3 Cicer arietinum L. HOM05D000581 ORTHO05D000412 9.4e-06 53.9 120 31.7
MD15G1195900 Malus domestica HOM05D000581 ORTHO05D000412 9.4e-06 53.9 59 44.1
Os01g0743800 Oryza sativa ssp. japonica HOM05D000581 ORTHO05D000412 9.4e-06 53.9 105 32.4
Potri.018G046800 Populus trichocarpa HOM05D000581 ORTHO05D000412 9.4e-06 53.9 53 50.9
Prupe.3G059200 Prunus persica HOM05D000581 ORTHO05D000412 9.4e-06 53.9 109 32.1


User provided reference genes

Program Settings