Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT5G19630 Arabidopsis thaliana HOM05D004698 ORTHO05D005699 3.1e-125 451.8 229 100.0
AL6G31140 Arabidopsis lyrata HOM05D004698 ORTHO05D005699 1.2e-121 439.9 229 96.9
Carub.0006s1798 Capsella rubella HOM05D004698 ORTHO05D005699 4.9e-115 417.9 229 94.3
CARHR193280 Cardamine hirsuta HOM05D004698 ORTHO05D005699 3.5e-113 411.8 229 89.5
BolC3t13583H Brassica oleracea HOM05D004698 ORTHO05D005699 2.5e-111 405.6 228 89.0
C03p11130 Brassica napus HOM05D004698 ORTHO05D005699 3.3e-111 405.2 228 89.0
Thhalv10014585m.g Eutrema salsugineum HOM05D004698 ORTHO05D005699 1.6e-110 402.9 228 90.8
A03p09560 Brassica napus HOM05D004698 ORTHO05D005699 1.8e-109 399.4 228 88.2
BraA03t10273Z Brassica rapa HOM05D004698 ORTHO05D005699 1.8e-109 399.4 228 88.2
BcaB01g04838 Brassica carinata HOM05D004698 ORTHO05D005699 5.3e-109 397.9 228 87.7
Sp6g24760 Schrenkiella parvula HOM05D004698 ORTHO05D005699 9.0e-109 397.1 228 88.2
BcaC03g13695 Brassica carinata HOM05D004698 ORTHO05D005699 5.5e-106 387.9 228 86.0
Aa31LG7G13160 Aethionema arabicum HOM05D004698 ORTHO05D005699 6.2e-102 374.4 229 81.2
THA.LOC104811123 Tarenaya hassleriana HOM05D004698 ORTHO05D005699 9.0e-101 370.5 229 80.3
BcaB05g23400 Brassica carinata HOM05D004698 ORTHO05D005699 9.7e-95 350.5 227 78.9
MELO3C015673.2 Cucumis melo HOM05D004698 ORTHO05D005699 1.4e-93 346.7 227 73.6
CsaV3_1G042380 Cucumis sativus L. HOM05D004698 ORTHO05D005699 1.4e-93 346.7 227 73.1
Potri.001G013700 Populus trichocarpa HOM05D004698 ORTHO05D005699 1.5e-92 343.2 227 72.2
Dinv08060 Davidia involucrata HOM05D004698 ORTHO05D005699 1.3e-91 340.1 229 73.4
Prupe.6G018000 Prunus persica HOM05D004698 ORTHO05D005699 2.9e-91 339.0 227 70.9
Ciclev10016541m.g Citrus clementina HOM05D004698 ORTHO05D005699 3.8e-91 338.6 230 70.9
Potri.003G212400 Populus trichocarpa HOM05D004698 ORTHO05D005699 7.2e-90 334.3 227 70.0
Potri.T056064 Populus trichocarpa HOM05D004698 ORTHO05D005699 7.2e-90 334.3 227 70.0
QL01p009119 Quercus lobata HOM05D004698 ORTHO05D005699 7.2e-90 334.3 226 70.8
TAR633G2590 Trochodendron aralioides HOM05D004698 ORTHO05D005699 9.4e-90 334.0 223 74.0
RcHm_v2.0_Chr5g0080391 Rosa chinensis HOM05D004698 ORTHO05D005699 2.7e-89 332.4 229 69.4
Nn2g15650 Nelumbo nucifera HOM05D004698 ORTHO05D005699 3.6e-89 332.0 229 71.2
Sabra03G0158600 Salix brachista HOM05D004698 ORTHO05D005699 3.6e-89 332.0 227 70.5
ClCG03G013670 Citrullus lanatus HOM05D004698 ORTHO05D005699 4.6e-89 331.6 215 74.0
Sabra03G0155400 Salix brachista HOM05D004698 ORTHO05D005699 6.1e-89 331.3 227 70.5
Cfa009658 Carpinus fangiana HOM05D004698 ORTHO05D005699 1.4e-88 330.1 227 70.5
FAN25G1145 Fragaria x ananassa HOM05D004698 ORTHO05D005699 2.3e-88 329.3 227 70.0
Duzib150G1219 Durio zibethinus HOM05D004698 ORTHO05D005699 3.0e-88 328.9 227 72.2
Thecc.09G219100 Theobroma cacao HOM05D004698 ORTHO05D005699 3.0e-88 328.9 226 72.6
VMungo0720G2032 Vigna mungo HOM05D004698 ORTHO05D005699 5.1e-88 328.2 229 70.7
Duzib168G2110 Durio zibethinus HOM05D004698 ORTHO05D005699 6.7e-88 327.8 227 70.9
Lj5g0001870 Lotus japonicus HOM05D004698 ORTHO05D005699 6.7e-88 327.8 229 71.6
FvH4_3g44090 Fragaria vesca HOM05D004698 ORTHO05D005699 8.8e-88 327.4 227 69.6
FAN16G2726 Fragaria x ananassa HOM05D004698 ORTHO05D005699 2.0e-87 326.2 227 69.2
Aqoxy1G00174 Aquilegia oxysepala HOM05D004698 ORTHO05D005699 2.5e-87 325.9 229 69.4
TWI60G0418 Tripterygium wilfordii HOM05D004698 ORTHO05D005699 2.5e-87 325.9 227 70.0
FAN11G2375 Fragaria x ananassa HOM05D004698 ORTHO05D005699 3.3e-87 325.5 227 69.2
Manes.14G015500 Manihot esculenta HOM05D004698 ORTHO05D005699 3.3e-87 325.5 227 69.2
Eucgr.B03647 Eucalyptus grandis HOM05D004698 ORTHO05D005699 5.7e-87 324.7 228 68.4
FAN21G3006 Fragaria x ananassa HOM05D004698 ORTHO05D005699 7.4e-87 324.3 227 69.6
Sc09g0000410 Simmondsia chinensis HOM05D004698 ORTHO05D005699 7.4e-87 324.3 229 70.3
CAN.G649.13 Capsicum annuum HOM05D004698 ORTHO05D005699 9.7e-87 323.9 231 64.9
MD03G1018500 Malus domestica HOM05D004698 ORTHO05D005699 9.7e-87 323.9 227 70.0
Glyma.20G247000 Glycine max HOM05D004698 ORTHO05D005699 2.2e-86 322.8 229 70.3
PSO339G6590 Papaver somniferum HOM05D004698 ORTHO05D005699 3.7e-86 322.0 222 72.1
Actinidia40436 Actinidia chinensis HOM05D004698 ORTHO05D005699 4.8e-86 321.6 221 68.8
Sed0023233 Sechium edule HOM05D004698 ORTHO05D005699 4.8e-86 321.6 223 70.0
Lalb_Chr02g0144411 Lupinus albus HOM05D004698 ORTHO05D005699 8.2e-86 320.9 230 68.7
Manes.06G169600 Manihot esculenta HOM05D004698 ORTHO05D005699 8.2e-86 320.9 227 69.2
CANSAT54G0070 Cannabis sativa HOM05D004698 ORTHO05D005699 1.1e-85 320.5 218 70.2
Atru.chr3.2431 Acer truncatum HOM05D004698 ORTHO05D005699 1.8e-85 319.7 227 69.2
Actinidia22026 Actinidia chinensis HOM05D004698 ORTHO05D005699 1.8e-85 319.7 221 68.8
AUR62000051 Chenopodium quinoa HOM05D004698 ORTHO05D005699 2.4e-85 319.3 222 68.9
Atru.chr3.2436 Acer truncatum HOM05D004698 ORTHO05D005699 3.1e-85 318.9 227 68.7
Gohir.D05G069500 Gossypium hirsutum HOM05D004698 ORTHO05D005699 4.1e-85 318.5 227 70.5
Solyc01g006480.3 Solanum lycopersicum HOM05D004698 ORTHO05D005699 6.9e-85 317.8 237 64.1
Ah.06g193310 Amaranthus hybridus HOM05D004698 ORTHO05D005699 9.1e-85 317.4 222 66.7
CiPaw.13G168500 Carya illinoinensis HOM05D004698 ORTHO05D005699 9.1e-85 317.4 215 72.6
Lalb_Chr06g0164501 Lupinus albus HOM05D004698 ORTHO05D005699 9.1e-85 317.4 229 67.7
Sopen01g002460 Solanum pennellii HOM05D004698 ORTHO05D005699 9.1e-85 317.4 237 64.1
Hund21659 Selenicereus undatus HOM05D004698 ORTHO05D005699 1.2e-84 317.0 220 68.2
Phvul.007G003200 Phaseolus vulgaris HOM05D004698 ORTHO05D005699 1.5e-84 316.6 229 69.0
PGR102G0099 Punica granatum HOM05D004698 ORTHO05D005699 1.5e-84 316.6 229 67.7
Hund07554 Selenicereus undatus HOM05D004698 ORTHO05D005699 1.5e-84 316.6 221 68.8
TPR.G32598 Trifolium pratense HOM05D004698 ORTHO05D005699 1.5e-84 316.6 230 68.3
Gorai.009G070500 Gossypium raimondii HOM05D004698 ORTHO05D005699 2.0e-84 316.2 227 70.0
Medtr8g092560 Medicago truncatula HOM05D004698 ORTHO05D005699 2.0e-84 316.2 230 67.8
PGSC0003DMG400032153 Solanum tuberosum HOM05D004698 ORTHO05D005699 3.4e-84 315.5 237 62.4
Ca_11410_v3 Cicer arietinum L. HOM05D004698 ORTHO05D005699 7.7e-84 314.3 226 70.4
Peaxi162Scf00403g00114 Petunia axillaris HOM05D004698 ORTHO05D005699 7.7e-84 314.3 217 67.3
Lsat_1_v5_gn_9_26700 Lactuca sativa HOM05D004698 ORTHO05D005699 1.3e-83 313.5 223 68.6
Nitab4.5_0001146g0120 Nicotiana tabacum HOM05D004698 ORTHO05D005699 1.3e-83 313.5 229 63.8
Gohir.A05G066748 Gossypium hirsutum HOM05D004698 ORTHO05D005699 2.2e-83 312.8 227 69.6
Nitab4.5_0013751g0010 Nicotiana tabacum HOM05D004698 ORTHO05D005699 8.5e-83 310.8 229 62.9
EL10Ac4g10324 Beta vulgaris HOM05D004698 ORTHO05D005699 1.4e-82 310.1 222 66.2
MSTRG.26088 Avicennia marina HOM05D004698 ORTHO05D005699 1.9e-82 309.7 222 67.1
Gorai.013G249300 Gossypium raimondii HOM05D004698 ORTHO05D005699 4.2e-82 308.5 226 67.3
Migut.K00041 Erythranthe guttata HOM05D004698 ORTHO05D005699 7.2e-82 307.8 224 67.4
Hma1.2p1_0183F.1_g080820 Hydrangea macrophylla HOM05D004698 ORTHO05D005699 2.1e-81 306.2 224 67.0
AUR62019223 Chenopodium quinoa HOM05D004698 ORTHO05D005699 3.6e-81 305.4 222 67.1
Gohir.A13G214800 Gossypium hirsutum HOM05D004698 ORTHO05D005699 3.6e-81 305.4 226 66.4
ECA247G2042 Erigeron canadensis HOM05D004698 ORTHO05D005699 4.7e-81 305.1 227 67.0
MD11G1019500 Malus domestica HOM05D004698 ORTHO05D005699 6.1e-81 304.7 250 62.0
arahy.Tifrunner.gnm1.ann1.5V818H Arachis hypogaea HOM05D004698 ORTHO05D005699 2.3e-80 302.8 227 66.1
arahy.Tifrunner.gnm1.ann1.Y8WF3A Arachis hypogaea HOM05D004698 ORTHO05D005699 2.3e-80 302.8 227 66.1
CDE10G0673 Ceratophyllum demersum HOM05D004698 ORTHO05D005699 2.3e-80 302.8 223 66.4
Lj2C370G0 Lonicera japonica HOM05D004698 ORTHO05D005699 5.1e-80 301.6 229 69.0
SGA_v2.0_scaffold94G28426 Striga asiatica HOM05D004698 ORTHO05D005699 6.7e-80 301.2 222 63.1
DCAR_003213 Daucus carota HOM05D004698 ORTHO05D005699 1.5e-79 300.1 222 65.3
ATR0605G157 Amborella trichopoda HOM05D004698 ORTHO05D005699 9.7e-79 297.4 227 63.9
Lju124A28T33 Lonicera japonica HOM05D004698 ORTHO05D005699 9.7e-79 297.4 223 64.1
SEGI_09892 Sequoiadendron giganteum HOM05D004698 ORTHO05D005699 1.7e-78 296.6 226 64.2
HanXRQChr10g0300701 Helianthus annuus HOM05D004698 ORTHO05D005699 8.2e-78 294.3 223 66.8
SalBow1G8278 Salvia bowleyana HOM05D004698 ORTHO05D005699 1.4e-77 293.5 221 65.6
Peaxi162Scf00258g00313 Petunia axillaris HOM05D004698 ORTHO05D005699 7.0e-77 291.2 221 63.8
Os02g0717100 Oryza sativa ssp. japonica HOM05D004698 ORTHO05D005699 1.2e-76 290.4 222 62.6
Zm00001eb252760 Zea mays HOM05D004698 ORTHO05D005699 1.2e-76 290.4 224 62.5
AagrBONN_evm.TU.Sc2ySwM_228.4678 Anthoceros agrestis HOM05D004698 ORTHO05D005699 2.0e-76 289.7 222 64.4
Sabra01G0010100 Salix brachista HOM05D004698 ORTHO05D005699 3.5e-76 288.9 359 46.0
COL.COLO4_10392 Corchorus olitorius HOM05D004698 ORTHO05D005699 1.0e-75 287.3 328 49.4
unitig_0.g767 Utricularia gibba HOM05D004698 ORTHO05D005699 1.3e-75 287.0 221 62.0
Nitab4.5_0000324g0230 Nicotiana tabacum HOM05D004698 ORTHO05D005699 8.5e-75 284.3 221 62.0
Nitab4.5_0003890g0030 Nicotiana tabacum HOM05D004698 ORTHO05D005699 2.5e-74 282.7 221 62.4
PGSC0003DMG400033344 Solanum tuberosum HOM05D004698 ORTHO05D005699 3.2e-74 282.3 228 60.1
Manes.08G045900 Manihot esculenta HOM05D004698 ORTHO05D005699 4.2e-74 282.0 222 60.8
Manes.08G046200 Manihot esculenta HOM05D004698 ORTHO05D005699 1.2e-73 280.4 222 60.4
Psat6g242840 Pisum sativum HOM05D004698 ORTHO05D005699 2.7e-73 279.3 230 61.7
Sopen03g015850 Solanum pennellii HOM05D004698 ORTHO05D005699 2.7e-73 279.3 227 59.5
Solyc03g063290.3 Solanum lycopersicum HOM05D004698 ORTHO05D005699 8.0e-73 277.7 227 59.0
Pp3c7_25270 Physcomitrium patens HOM05D004698 ORTHO05D005699 1.0e-72 277.3 222 60.4
vmacro07926 Vaccinium macrocarpon HOM05D004698 ORTHO05D005699 1.0e-72 277.3 308 50.3
SMO117G0218 Selaginella moellendorffii HOM05D004698 ORTHO05D005699 2.3e-72 276.2 223 62.3
CAN.G364.5 Capsicum annuum HOM05D004698 ORTHO05D005699 5.2e-72 275.0 221 59.7
Mapoly0046s0043 Marchantia polymorpha HOM05D004698 ORTHO05D005699 1.5e-71 273.5 222 59.0
BNapus_Darmor_BZH_scaffold_38p02250 Brassica napus HOM05D004698 ORTHO05D005699 7.4e-71 271.2 152 88.8
Psat2g056640 Pisum sativum HOM05D004698 ORTHO05D005699 1.3e-70 270.4 230 60.4
Pp3c25_340 Physcomitrium patens HOM05D004698 ORTHO05D005699 3.1e-69 265.8 223 57.4
BolC2t06975H Brassica oleracea HOM05D004698 ORTHO05D005699 5.0e-67 258.5 152 85.5
GSVIVG01025354001 Vitis vinifera HOM05D004698 ORTHO05D005699 9.7e-63 244.2 152 77.6
MBI01_g33892_MAGBIO Magnolia biondii HOM05D004698 ORTHO05D005699 1.7e-62 243.4 175 69.1
SHI30529 Sapria himalayana HOM05D004698 ORTHO05D005699 7.7e-60 234.6 225 53.3
Cc06_g16050 Coffea canephora HOM05D004698 ORTHO05D005699 1.1e-58 230.7 152 71.7
Dinv36316 Davidia involucrata HOM05D004698 ORTHO05D005699 8.3e-54 214.5 146 70.5
SalBow1G8507 Salvia bowleyana HOM05D004698 ORTHO05D005699 2.4e-53 213.0 177 61.6
A02p05700 Brassica napus HOM05D004698 ORTHO05D005699 3.3e-50 202.6 111 89.2
BraA02t05522Z Brassica rapa HOM05D004698 ORTHO05D005699 3.3e-50 202.6 111 89.2
TAR636G0496 Trochodendron aralioides HOM05D004698 ORTHO05D005699 1.2e-49 200.7 123 79.7
Cc01_g03800 Coffea canephora HOM05D004698 ORTHO05D005699 6.1e-49 198.4 129 76.0
HPP92_022782 Vanilla planifolia HOM05D004698 ORTHO05D005699 2.6e-47 193.0 169 58.6
Glyma.18G020100 Glycine max HOM05D004698 ORTHO05D005699 6.3e-46 188.3 193 54.4
Haze_23028 Corylus avellana HOM05D004698 ORTHO05D005699 1.2e-44 184.1 226 45.1
CSS0002150 Camellia sinensis var. sinensis HOM05D004698 ORTHO05D005699 2.3e-43 179.9 107 80.4
Cpa.g.sc117.1 Carica papaya HOM05D004698 ORTHO05D005699 6.1e-41 171.8 99 81.8
Eucgr.L01569 Eucalyptus grandis HOM05D004698 ORTHO05D005699 1.4e-37 160.6 120 65.0
MD03G1017600 Malus domestica HOM05D004698 ORTHO05D005699 7.0e-37 158.3 95 80.0
Nn7g36023 Nelumbo nucifera HOM05D004698 ORTHO05D005699 4.6e-36 155.6 123 60.2
Manes.10G126700 Manihot esculenta HOM05D004698 ORTHO05D005699 1.0e-35 154.5 120 62.5
Duzib170G0131 Durio zibethinus HOM05D004698 ORTHO05D005699 2.8e-33 146.4 121 60.3
PRCOL_00006777 Prasinoderma coloniale HOM05D004698 ORTHO05D005699 2.8e-33 146.4 191 39.8
MD03G1115900 Malus domestica HOM05D004698 ORTHO05D005699 7.1e-29 131.7 145 45.5
RcHm_v2.0_Chr5g0080421 Rosa chinensis HOM05D004698 ORTHO05D005699 1.5e-26 124.0 88 62.5
Sabra16G0026900 Salix brachista HOM05D004698 ORTHO05D005699 7.3e-26 121.7 130 52.3
Ca_11408_v3 Cicer arietinum L. HOM05D004119 ORTHO05D004797 1.6e-25 120.6 107 58.9
Dinv15836 Davidia involucrata HOM05D004698 ORTHO05D005699 2.3e-19 100.1 84 59.5
RcHm_v2.0_Chr1g0343461 Rosa chinensis HOM05D004698 ORTHO05D005699 6.4e-14 82.0 57 66.7
Potri.006G191700 Populus trichocarpa HOM05D004698 ORTHO05D005699 7.8e-12 75.1 84 41.7
MD03G1017500 Malus domestica HOM05D004698 ORTHO05D005699 1.9e-10 70.5 60 53.3
MD13G1112600 Malus domestica HOM05D000829 ORTHO05D000690 4.9e-06 55.8 47 53.2


User provided reference genes

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