Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT5G19540 Arabidopsis thaliana HOM05D005548 ORTHO05D007497 5.8e-264 913.7 463 100.0
Carub.0006s1789 Capsella rubella HOM05D005548 ORTHO05D007497 5.6e-243 844.0 463 93.5
AL6G31050 Arabidopsis lyrata HOM05D005548 ORTHO05D007497 1.1e-241 839.7 464 92.5
CARHR193360 Cardamine hirsuta HOM05D005548 ORTHO05D007497 2.9e-231 805.1 466 89.1
Thhalv10013469m.g Eutrema salsugineum HOM05D005548 ORTHO05D007497 2.6e-224 781.9 467 87.2
Sp6g24840 Schrenkiella parvula HOM05D005548 ORTHO05D007497 4.2e-222 774.6 469 86.1
BcaB05g23389 Brassica carinata HOM05D005548 ORTHO05D007497 2.0e-216 755.7 468 84.4
BcaC03g13685 Brassica carinata HOM05D005548 ORTHO05D007497 3.9e-212 741.5 470 82.1
BNapus_Darmor_BZH_scaffold_38p02320 Brassica napus HOM05D005548 ORTHO05D007497 3.9e-212 741.5 470 82.1
BolC2t06964H Brassica oleracea HOM05D005548 ORTHO05D007497 1.5e-211 739.6 470 81.9
A02p05630 Brassica napus HOM05D005548 ORTHO05D007497 3.3e-211 738.4 465 82.6
BraA02t05515Z Brassica rapa HOM05D005548 ORTHO05D007497 3.3e-211 738.4 465 82.6
Aa31LG4G18070 Aethionema arabicum HOM05D005548 ORTHO05D007497 3.6e-197 691.8 466 76.0
THA.LOC104811114 Tarenaya hassleriana HOM05D005548 ORTHO05D007497 1.6e-181 639.8 466 70.8
Actinidia09420 Actinidia chinensis HOM05D005548 ORTHO05D007497 2.4e-169 599.4 431 69.1
GSVIVG01015386001 Vitis vinifera HOM05D005548 ORTHO05D007497 4.1e-169 598.6 423 70.2
Manes.03G021300 Manihot esculenta HOM05D005548 ORTHO05D007497 9.2e-169 597.4 472 66.5
Haze_25723 Corylus avellana HOM05D005548 ORTHO05D007497 4.6e-168 595.1 467 67.0
Eucgr.C01037 Eucalyptus grandis HOM05D005548 ORTHO05D007497 4.6e-168 595.1 465 66.2
Cpa.g.sc23.102 Carica papaya HOM05D005548 ORTHO05D007497 5.9e-168 594.7 466 66.3
Glyma.07G085900 Glycine max HOM05D005548 ORTHO05D007497 7.8e-168 594.3 460 66.5
Glyma.09G191000 Glycine max HOM05D005548 ORTHO05D007497 7.8e-168 594.3 460 66.5
PGR142G0895 Punica granatum HOM05D005548 ORTHO05D007497 7.8e-168 594.3 453 67.5
Thecc.09G109700 Theobroma cacao HOM05D005548 ORTHO05D007497 7.8e-168 594.3 466 67.2
Cfa021563 Carpinus fangiana HOM05D005548 ORTHO05D007497 1.7e-167 593.2 468 66.7
Haze_25730 Corylus avellana HOM05D005548 ORTHO05D007497 1.7e-167 593.2 467 66.8
VMungo0464G1126 Vigna mungo HOM05D005548 ORTHO05D007497 1.1e-166 590.5 461 66.4
Hma1.2p1_0518F.1_g171060 Hydrangea macrophylla HOM05D005548 ORTHO05D007497 4.3e-166 588.6 408 71.1
QL02p085206 Quercus lobata HOM05D005548 ORTHO05D007497 5.6e-166 588.2 409 71.4
CSS0009071 Camellia sinensis var. sinensis HOM05D005548 ORTHO05D007497 9.5e-166 587.4 438 68.0
CSS0001162 Camellia sinensis var. sinensis HOM05D005548 ORTHO05D007497 2.1e-165 586.3 461 66.6
ClCG00G004520 Citrullus lanatus HOM05D005548 ORTHO05D007497 2.8e-165 585.9 410 71.0
Dinv41607 Davidia involucrata HOM05D005548 ORTHO05D007497 2.8e-165 585.9 473 65.3
Potri.018G080900 Populus trichocarpa HOM05D005548 ORTHO05D007497 1.0e-164 583.9 447 66.4
TAR383G0243 Trochodendron aralioides HOM05D005548 ORTHO05D007497 1.4e-164 583.6 470 64.9
Phvul.004G163700 Phaseolus vulgaris HOM05D005548 ORTHO05D007497 1.8e-164 583.2 460 65.7
Sabra18G0068100 Salix brachista HOM05D005548 ORTHO05D007497 1.8e-164 583.2 441 67.6
Duzib168G0181 Durio zibethinus HOM05D005548 ORTHO05D007497 2.3e-164 582.8 464 65.5
Gohir.A07G006100 Gossypium hirsutum HOM05D005548 ORTHO05D007497 8.9e-164 580.9 389 73.3
Lj2g0015861 Lotus japonicus HOM05D005548 ORTHO05D007497 1.5e-163 580.1 394 71.3
CiPaw.04G163600 Carya illinoinensis HOM05D005548 ORTHO05D007497 5.8e-163 578.2 470 65.3
EL10Ac8g18489 Beta vulgaris HOM05D005548 ORTHO05D007497 7.5e-163 577.8 457 65.6
DCAR_010452 Daucus carota HOM05D005548 ORTHO05D007497 7.5e-163 577.8 444 66.0
Sc18g0001240 Simmondsia chinensis HOM05D005548 ORTHO05D007497 9.8e-163 577.4 461 64.0
Lalb_Chr14g0371531 Lupinus albus HOM05D005548 ORTHO05D007497 1.3e-162 577.0 458 64.4
Dinv36636 Davidia involucrata HOM05D005548 ORTHO05D007497 1.7e-162 576.6 467 63.6
Gohir.D07G005900 Gossypium hirsutum HOM05D005548 ORTHO05D007497 2.2e-162 576.2 454 65.9
arahy.Tifrunner.gnm1.ann1.HQIA7A Arachis hypogaea HOM05D005548 ORTHO05D007497 2.9e-162 575.9 458 66.2
Nitab4.5_0005947g0010 Nicotiana tabacum HOM05D005548 ORTHO05D007497 2.9e-162 575.9 451 67.2
MELO3C025346.2 Cucumis melo HOM05D005548 ORTHO05D007497 3.7e-162 575.5 406 70.0
TWI63G0439 Tripterygium wilfordii HOM05D005548 ORTHO05D007497 4.9e-162 575.1 466 65.5
Lalb_Chr22g0352791 Lupinus albus HOM05D005548 ORTHO05D007497 8.3e-162 574.3 467 65.1
Lsat_1_v5_gn_8_95001 Lactuca sativa HOM05D005548 ORTHO05D007497 1.4e-161 573.5 399 70.7
MD02G1046200 Malus domestica HOM05D005548 ORTHO05D007497 1.9e-161 573.2 465 65.2
Atru.chr7.1357 Acer truncatum HOM05D005548 ORTHO05D007497 3.2e-161 572.4 384 74.2
PGSC0003DMG400000312 Solanum tuberosum HOM05D005548 ORTHO05D007497 3.2e-161 572.4 446 66.1
Sed0013441 Sechium edule HOM05D005548 ORTHO05D007497 4.1e-161 572.0 459 64.9
Gorai.001G005500 Gossypium raimondii HOM05D005548 ORTHO05D007497 5.4e-161 571.6 454 65.4
Cc06_g09710 Coffea canephora HOM05D005548 ORTHO05D007497 9.2e-161 570.9 470 64.0
FAN19G0123 Fragaria x ananassa HOM05D005548 ORTHO05D007497 9.2e-161 570.9 405 71.4
Sopen12g003070 Solanum pennellii HOM05D005548 ORTHO05D007497 9.2e-161 570.9 447 66.2
FvH4_1g04721 Fragaria vesca HOM05D005548 ORTHO05D007497 2.0e-160 569.7 405 71.4
Hund26198 Selenicereus undatus HOM05D005548 ORTHO05D007497 2.0e-160 569.7 468 65.2
Solyc12g007090.2 Solanum lycopersicum HOM05D005548 ORTHO05D007497 2.0e-160 569.7 447 66.2
CAN.G1529.9 Capsicum annuum HOM05D005548 ORTHO05D007497 2.7e-160 569.3 443 65.5
Prupe.7G231800 Prunus persica HOM05D005548 ORTHO05D007497 2.7e-160 569.3 459 65.4
Actinidia20374 Actinidia chinensis HOM05D005548 ORTHO05D007497 1.3e-159 567.0 366 73.5
ECA233G4048 Erigeron canadensis HOM05D005548 ORTHO05D007497 1.7e-159 566.6 382 71.7
Nn2g11732 Nelumbo nucifera HOM05D005548 ORTHO05D007497 1.7e-159 566.6 452 64.4
COL.COLO4_34874 Corchorus olitorius HOM05D005548 ORTHO05D007497 3.0e-159 565.8 377 73.5
CsaV3_1G024240 Cucumis sativus L. HOM05D005548 ORTHO05D007497 3.0e-159 565.8 456 64.3
Lj7C651T8 Lonicera japonica HOM05D005548 ORTHO05D007497 5.0e-159 565.1 417 67.9
Migut.K00455 Erythranthe guttata HOM05D005548 ORTHO05D007497 6.6e-159 564.7 460 63.5
HanXRQChr06g0179971 Helianthus annuus HOM05D005548 ORTHO05D007497 5.6e-158 561.6 439 65.1
MBI04_g22012_MAGBIO Magnolia biondii HOM05D005548 ORTHO05D007497 2.1e-157 559.7 474 63.3
AUR62010987 Chenopodium quinoa HOM05D005548 ORTHO05D007497 4.7e-157 558.5 377 72.4
PSO832G1226 Papaver somniferum HOM05D005548 ORTHO05D007497 2.3e-156 556.2 424 66.3
PSO782G1908 Papaver somniferum HOM05D005548 ORTHO05D007497 2.0e-155 553.1 468 60.9
SGA_v2.0_scaffold307G48040 Striga asiatica HOM05D005548 ORTHO05D007497 2.0e-155 553.1 402 68.7
FAN23G0305 Fragaria x ananassa HOM05D005548 ORTHO05D007497 2.6e-155 552.7 455 65.1
FAN26G0240 Fragaria x ananassa HOM05D005548 ORTHO05D007497 3.4e-155 552.4 457 64.8
Peaxi162Scf00546g00024 Petunia axillaris HOM05D005548 ORTHO05D007497 3.4e-155 552.4 447 63.8
RcHm_v2.0_Chr2g0090331 Rosa chinensis HOM05D005548 ORTHO05D007497 1.3e-154 550.4 453 63.6
Ca_03976_v3 Cicer arietinum L. HOM05D005548 ORTHO05D007497 2.9e-154 549.3 394 69.5
Aqoxy7G01651 Aquilegia oxysepala HOM05D005548 ORTHO05D007497 1.1e-153 547.4 456 61.0
MSTRG.26421 Avicennia marina HOM05D005548 ORTHO05D007497 1.9e-153 546.6 456 61.4
TPR.G18453 Trifolium pratense HOM05D005548 ORTHO05D007497 1.6e-152 543.5 456 63.2
SalBow1G6148 Salvia bowleyana HOM05D005548 ORTHO05D007497 6.0e-152 541.6 412 66.3
Psat1g042920 Pisum sativum HOM05D005548 ORTHO05D007497 1.1e-150 537.3 467 61.0
Medtr6g088460 Medicago truncatula HOM05D005548 ORTHO05D007497 4.3e-150 535.4 456 61.6
ATR0315G003 Amborella trichopoda HOM05D005548 ORTHO05D007497 1.6e-149 533.5 390 68.7
Nitab4.5_0002904g0080 Nicotiana tabacum HOM05D005548 ORTHO05D007497 8.1e-149 531.2 448 64.3
MD15G1184300 Malus domestica HOM05D005548 ORTHO05D007497 1.4e-148 530.4 452 63.3
CDE02G3701 Ceratophyllum demersum HOM05D005548 ORTHO05D007497 2.3e-148 529.6 463 61.1
unitig_899.g15439 Utricularia gibba HOM05D005548 ORTHO05D007497 4.4e-147 525.4 421 62.9
Os08g0387500 Oryza sativa ssp. japonica HOM05D005548 ORTHO05D007497 2.4e-140 503.1 389 64.5
Duzib150G0071 Durio zibethinus HOM05D005548 ORTHO05D007497 3.4e-139 499.2 460 60.9
Zm00001eb042080 Zea mays HOM05D005548 ORTHO05D007497 9.3e-137 491.1 394 62.2
vmacro20704 Vaccinium macrocarpon HOM05D005548 ORTHO05D007497 9.6e-134 481.1 390 62.1
Hma1.2p1_0518F.1_g171070 Hydrangea macrophylla HOM05D005548 ORTHO05D007497 2.2e-130 469.9 316 72.5
FAN28G1005 Fragaria x ananassa HOM05D005548 ORTHO05D007497 1.1e-129 467.6 391 65.0
SalBow1G2309 Salvia bowleyana HOM05D005548 ORTHO05D007497 5.4e-129 465.3 346 67.1
Rhsim01G0095300 Rhododendron simsii HOM05D005548 ORTHO05D007497 3.0e-127 459.5 453 53.2
HPP92_019989 Vanilla planifolia HOM05D005548 ORTHO05D004628 5.5e-105 385.6 349 57.0
Mapoly0115s0052 Marchantia polymorpha HOM05D005548 ORTHO05D007497 1.3e-103 380.9 384 52.3
Pp3c17_15530 Physcomitrium patens HOM05D005548 ORTHO05D007497 1.1e-102 377.9 381 51.7
AUR62021496 Chenopodium quinoa HOM05D005548 ORTHO05D007497 4.1e-100 369.4 246 72.8
Pp3c17_15540 Physcomitrium patens HOM05D005548 ORTHO05D007497 2.6e-99 366.7 364 51.9
AagrBONN_evm.TU.Sc2ySwM_344.3922 Anthoceros agrestis HOM05D005548 ORTHO05D007497 2.9e-98 363.2 397 47.9
SMO367G0640 Selaginella moellendorffii HOM05D005548 ORTHO05D007497 9.7e-94 348.2 394 49.5
SEGI_13755 Sequoiadendron giganteum HOM05D005548 ORTHO05D007497 8.2e-93 345.1 383 47.0
SEGI_11261 Sequoiadendron giganteum HOM05D005548 ORTHO05D007497 1.8e-79 300.8 322 47.5
CBR_g3024 Chara braunii HOM05D005548 ORTHO05D007497 3.7e-77 293.1 387 45.0
Rhsim01G0096400 Rhododendron simsii HOM05D005548 ORTHO05D007497 3.1e-68 263.5 339 41.9
AUR62021498 Chenopodium quinoa HOM05D005548 ORTHO05D007497 1.1e-49 201.8 137 70.1
Nn8g39172 Nelumbo nucifera HOM05D005548 ORTHO05D007497 4.0e-39 166.8 113 72.6
Ciclev10010350m.g Citrus clementina HOM05D005548 ORTHO05D007497 6.8e-39 166.0 257 40.9
Oeu048670.1 Olea europaea HOM05D005548 ORTHO05D007497 6.6e-34 149.4 100 67.0
CSS0042262 Camellia sinensis var. sinensis HOM05D003621 ORTHO05D004259 2.7e-27 127.5 84 72.6
CSS0016063 Camellia sinensis var. sinensis HOM05D003621 ORTHO05D004259 7.8e-27 125.9 84 72.6
SEGI_35049 Sequoiadendron giganteum HOM05D005548 ORTHO05D007497 1.1e-25 122.1 258 34.9
SEGI_23308 Sequoiadendron giganteum HOM05D005548 ORTHO05D007497 2.4e-23 114.4 341 29.6
CSS0021555 Camellia sinensis var. sinensis HOM05D005548 ORTHO05D007497 6.9e-23 112.8 72 76.4
Ah.12g056490 Amaranthus hybridus HOM05D005548 ORTHO05D007497 2.6e-22 110.9 83 67.5
Dinv06981 Davidia involucrata HOM05D005548 ORTHO05D045157 2.6e-22 110.9 81 65.4
MCO02G293 Micromonas commoda HOM05D005548 ORTHO05D007497 8.4e-21 105.9 355 27.9
arahy.Tifrunner.gnm1.ann1.VN1956 Arachis hypogaea HOM05D005548 ORTHO05D007497 7.3e-17 92.8 132 49.2
CSS0011769 Camellia sinensis var. sinensis HOM05D005548 ORTHO05D007497 2.1e-16 91.3 138 45.7
CSS0008633 Camellia sinensis var. sinensis HOM05D005548 ORTHO05D007497 4.9e-13 80.1 72 59.7
CSS0008802 Camellia sinensis var. sinensis HOM05D005548 ORTHO05D007497 6.0e-11 73.2 129 41.1
SalBow1G1492 Salvia bowleyana HOM05D005548 ORTHO05D007497 6.0e-11 73.2 53 66.0


User provided reference genes

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