Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT5G19485 Arabidopsis thaliana HOM05D005230 ORTHO05D006506 4.2e-206 721.5 457 100.0
AL6G30990 Arabidopsis lyrata HOM05D005230 ORTHO05D006506 7.9e-197 690.6 384 93.5
Carub.0006s1783 Capsella rubella HOM05D005230 ORTHO05D006506 1.1e-195 686.8 457 93.7
Thhalv10013503m.g Eutrema salsugineum HOM05D005230 ORTHO05D006506 8.4e-191 670.6 457 90.4
CARHR193430 Cardamine hirsuta HOM05D005230 ORTHO05D006506 1.8e-188 662.9 457 90.2
Sp6g24920 Schrenkiella parvula HOM05D005230 ORTHO05D006506 1.9e-187 659.4 457 89.9
A10p20220 Brassica napus HOM05D005230 ORTHO05D006506 8.1e-186 654.1 457 83.4
A02p05570 Brassica napus HOM05D005230 ORTHO05D006506 5.3e-185 651.4 454 84.8
BraA10t44093Z Brassica rapa HOM05D005230 ORTHO05D006506 5.8e-184 647.9 462 82.5
BNapus_Darmor_BZH_scaffold_38p02380 Brassica napus HOM05D005230 ORTHO05D006506 1.3e-183 646.7 454 84.4
BolC2t06957H Brassica oleracea HOM05D005230 ORTHO05D006506 1.7e-183 646.4 454 84.4
BraA02t05508Z Brassica rapa HOM05D005230 ORTHO05D006506 2.2e-183 646.0 454 84.1
Aa31LG1G8850 Aethionema arabicum HOM05D005230 ORTHO05D006506 8.2e-178 627.5 388 83.0
THA.LOC104811208 Tarenaya hassleriana HOM05D005230 ORTHO05D006506 6.3e-170 601.3 388 82.5
Atru.chr3.2845 Acer truncatum HOM05D005230 ORTHO05D006506 2.6e-155 552.7 389 72.8
Eucgr.B03758 Eucalyptus grandis HOM05D005230 ORTHO05D006506 1.7e-154 550.1 388 72.2
Cpa.g.sc34.203 Carica papaya HOM05D005230 ORTHO05D006506 1.1e-153 547.4 388 73.7
CANSAT54G1170 Cannabis sativa HOM05D005230 ORTHO05D006506 3.1e-153 545.8 387 73.4
CiPaw.13G147000 Carya illinoinensis HOM05D005230 ORTHO05D006506 3.1e-153 545.8 388 72.7
GSVIVG01020254001 Vitis vinifera HOM05D005230 ORTHO05D006506 7.0e-153 544.7 388 73.2
TWI75G0256 Tripterygium wilfordii HOM05D005230 ORTHO05D006506 1.2e-152 543.9 388 71.4
Prupe.4G269500 Prunus persica HOM05D005230 ORTHO05D006506 2.6e-152 542.7 388 72.7
Actinidia06848 Actinidia chinensis HOM05D005230 ORTHO05D006506 1.3e-151 540.4 389 71.5
CSS0035138 Camellia sinensis var. sinensis HOM05D005230 ORTHO05D006506 1.7e-151 540.0 389 71.5
CSS0009799 Camellia sinensis var. sinensis HOM05D005230 ORTHO05D006506 2.2e-151 539.7 389 71.5
arahy.Tifrunner.gnm1.ann1.554KFZ Arachis hypogaea HOM05D005230 ORTHO05D006506 2.9e-151 539.3 387 71.6
arahy.Tifrunner.gnm1.ann1.YWPQ0A Arachis hypogaea HOM05D005230 ORTHO05D006506 2.9e-151 539.3 387 71.6
Ciclev10015197m.g Citrus clementina HOM05D005230 ORTHO05D006506 3.8e-151 538.9 388 71.1
QL01p016185 Quercus lobata HOM05D005230 ORTHO05D006506 6.5e-151 538.1 388 72.7
Manes.05G199900 Manihot esculenta HOM05D005230 ORTHO05D006506 3.2e-150 535.8 388 70.9
MD03G1163000 Malus domestica HOM05D005230 ORTHO05D006506 5.5e-150 535.0 388 71.4
Actinidia16258 Actinidia chinensis HOM05D005230 ORTHO05D006506 7.2e-150 534.6 389 70.7
Sopen11g029740 Solanum pennellii HOM05D005230 ORTHO05D006506 9.4e-150 534.3 389 70.4
Solyc11g072090.2 Solanum lycopersicum HOM05D005230 ORTHO05D006506 3.6e-149 532.3 389 70.2
PGSC0003DMG400027416 Solanum tuberosum HOM05D005230 ORTHO05D006506 6.1e-149 531.6 389 70.7
CAN.G280.6 Capsicum annuum HOM05D005230 ORTHO05D006506 1.8e-148 530.0 389 70.2
Haze_23300 Corylus avellana HOM05D005230 ORTHO05D006506 2.3e-148 529.6 386 71.5
TWI31G0483 Tripterygium wilfordii HOM05D005230 ORTHO05D006506 2.3e-148 529.6 388 70.1
Haze_23295 Corylus avellana HOM05D005230 ORTHO05D006506 3.0e-148 529.3 389 71.5
Manes.01G177100 Manihot esculenta HOM05D005230 ORTHO05D006506 3.0e-148 529.3 388 70.1
Lj4g0004497 Lotus japonicus HOM05D005230 ORTHO05D006506 5.2e-148 528.5 390 70.5
Potri.009G066400 Populus trichocarpa HOM05D005230 ORTHO05D006506 6.7e-148 528.1 388 69.6
Nn7g36961 Nelumbo nucifera HOM05D005230 ORTHO05D006506 8.8e-148 527.7 391 69.6
Rhsim13G0231000 Rhododendron simsii HOM05D005230 ORTHO05D006506 1.2e-147 527.3 389 69.9
VMungo0251G0349 Vigna mungo HOM05D005230 ORTHO05D006506 3.3e-147 525.8 389 70.2
Potri.001G271800 Populus trichocarpa HOM05D005230 ORTHO05D006506 5.7e-147 525.0 387 69.3
Sabra16G0167000 Salix brachista HOM05D005230 ORTHO05D006506 5.7e-147 525.0 387 69.3
Dinv29329 Davidia involucrata HOM05D005230 ORTHO05D006506 7.5e-147 524.6 389 70.4
Aqoxy1G00076 Aquilegia oxysepala HOM05D005230 ORTHO05D006506 9.7e-147 524.2 390 68.5
Sabra09G0049500 Salix brachista HOM05D005230 ORTHO05D006506 2.2e-146 523.1 388 69.1
TPR.G24369 Trifolium pratense HOM05D005230 ORTHO05D006506 4.8e-146 521.9 388 69.1
AUR62006575 Chenopodium quinoa HOM05D005230 ORTHO05D006506 6.3e-146 521.5 393 69.5
Lalb_Chr07g0186541 Lupinus albus HOM05D005230 ORTHO05D006506 6.3e-146 521.5 388 69.8
AUR62000229 Chenopodium quinoa HOM05D005230 ORTHO05D006506 8.2e-146 521.2 393 69.2
Phvul.002G235800 Phaseolus vulgaris HOM05D005230 ORTHO05D006506 8.2e-146 521.2 389 69.4
Ca_17953_v3 Cicer arietinum L. HOM05D005230 ORTHO05D006506 2.4e-145 519.6 388 69.6
Cc01_g07300 Coffea canephora HOM05D005230 ORTHO05D006506 5.3e-145 518.5 389 69.4
HanXRQChr13g0402151 Helianthus annuus HOM05D005230 ORTHO05D006506 5.3e-145 518.5 389 68.6
Oeu025950.1 Olea europaea HOM05D005230 ORTHO05D006506 7.0e-145 518.1 389 68.1
ECA238G4724 Erigeron canadensis HOM05D005230 ORTHO05D006506 1.6e-144 516.9 389 69.7
Cfa009930 Carpinus fangiana HOM05D005230 ORTHO05D006506 1.3e-143 513.8 367 72.5
Glyma.08G113500 Glycine max HOM05D005230 ORTHO05D006506 1.3e-143 513.8 388 68.6
Psat7g073480 Pisum sativum HOM05D005230 ORTHO05D006506 1.3e-143 513.8 388 68.6
Glyma.05G155700 Glycine max HOM05D005230 ORTHO05D006506 5.0e-143 511.9 388 68.3
Peaxi162Scf00978g00317 Petunia axillaris HOM05D005230 ORTHO05D006506 5.0e-143 511.9 389 68.6
Hund07409 Selenicereus undatus HOM05D005230 ORTHO05D006506 5.0e-143 511.9 393 67.7
CsaV3_1G041930 Cucumis sativus L. HOM05D005230 ORTHO05D006506 1.1e-142 510.8 388 68.0
ClCG03G014290 Citrullus lanatus HOM05D005230 ORTHO05D006506 1.5e-142 510.4 388 67.8
Lsat_1_v5_gn_2_32160 Lactuca sativa HOM05D005230 ORTHO05D006506 3.2e-142 509.2 389 67.9
Sed0024170 Sechium edule HOM05D005230 ORTHO05D006506 3.2e-142 509.2 388 68.6
Thecc.09G252100 Theobroma cacao HOM05D005230 ORTHO05D006506 5.5e-142 508.4 388 68.3
MELO3C015608.2 Cucumis melo HOM05D005230 ORTHO05D006506 7.2e-142 508.1 388 67.8
COL.COLO4_33253 Corchorus olitorius HOM05D005230 ORTHO05D006506 8.0e-141 504.6 388 68.3
Medtr8g085640 Medicago truncatula HOM05D005230 ORTHO05D006506 8.0e-141 504.6 388 67.5
FAN23G0348 Fragaria x ananassa HOM05D005230 ORTHO05D006506 1.0e-140 504.2 388 67.5
RcHm_v2.0_Chr2g0123421 Rosa chinensis HOM05D005230 ORTHO05D006506 1.0e-140 504.2 388 68.0
DCAR_031608 Daucus carota HOM05D005230 ORTHO05D006506 1.4e-140 503.8 389 66.1
FvH4_1g25390 Fragaria vesca HOM05D005230 ORTHO05D006506 1.8e-140 503.4 388 67.5
MSTRG.21320 Avicennia marina HOM05D005230 ORTHO05D006506 2.3e-140 503.1 389 67.1
Migut.D00707 Erythranthe guttata HOM05D005230 ORTHO05D006506 3.0e-140 502.7 403 65.8
Duzib168G0825 Durio zibethinus HOM05D005230 ORTHO05D006506 6.8e-140 501.5 387 66.9
SGA_v2.0_scaffold29G12151 Striga asiatica HOM05D005230 ORTHO05D006506 1.2e-139 500.7 389 64.8
FAN28G1729 Fragaria x ananassa HOM05D005230 ORTHO05D006506 2.6e-139 499.6 388 66.8
PSO339G0973 Papaver somniferum HOM05D005230 ORTHO05D006506 4.4e-139 498.8 389 67.4
PSO384G0943 Papaver somniferum HOM05D005230 ORTHO05D006506 1.7e-138 496.9 389 67.1
Duzib150G1312 Durio zibethinus HOM05D005230 ORTHO05D006506 5.4e-137 491.9 388 66.5
SalBow6G0054 Salvia bowleyana HOM05D005230 ORTHO05D006506 2.0e-136 490.0 410 62.2
Lj2C810G6 Lonicera japonica HOM05D005230 ORTHO05D006506 4.5e-136 488.8 366 68.6
ATR0307G025 Amborella trichopoda HOM05D005230 ORTHO05D006506 1.0e-135 487.6 385 63.1
FAN19G0408 Fragaria x ananassa HOM05D005230 ORTHO05D006506 1.0e-135 487.6 387 66.1
Oeu032061.2 Olea europaea HOM05D005230 ORTHO05D006506 1.7e-135 486.9 420 62.1
EL10Ac4g10073 Beta vulgaris HOM05D005230 ORTHO05D006506 2.5e-134 483.0 392 65.1
CDE08G0498 Ceratophyllum demersum HOM05D005230 ORTHO05D006506 1.5e-131 473.8 390 65.4
Nitab4.5_0002161g0080 Nicotiana tabacum HOM05D005230 ORTHO05D006506 2.6e-131 473.0 389 65.3
MBI13_g00890_MAGBIO Magnolia biondii HOM05D005230 ORTHO05D006506 1.6e-128 463.8 396 63.4
Gorai.004G013700 Gossypium raimondii HOM05D005230 ORTHO05D006506 5.0e-127 458.8 388 63.1
Gohir.D08G019200 Gossypium hirsutum HOM05D005230 ORTHO05D006506 1.1e-126 457.6 388 62.9
FAN26G2809 Fragaria x ananassa HOM05D005230 ORTHO05D006506 2.5e-126 456.4 477 55.1
Gohir.D09G105900 Gossypium hirsutum HOM05D005230 ORTHO05D006506 7.3e-126 454.9 388 62.9
Gorai.006G123300 Gossypium raimondii HOM05D005230 ORTHO05D006506 7.3e-126 454.9 388 62.9
Gohir.A08G009200 Gossypium hirsutum HOM05D005230 ORTHO05D006506 9.5e-126 454.5 388 62.6
HPP92_016891 Vanilla planifolia HOM05D005230 ORTHO05D006506 8.0e-125 451.4 384 62.5
SEGI_36393 Sequoiadendron giganteum HOM05D005230 ORTHO05D006506 1.0e-124 451.1 388 60.8
Ah.06g194900 Amaranthus hybridus HOM05D005230 ORTHO05D006506 4.0e-124 449.1 389 60.7
Os06g0338900 Oryza sativa ssp. japonica HOM05D005230 ORTHO05D006506 7.5e-123 444.9 392 58.7
Gohir.A09G109300 Gossypium hirsutum HOM05D005230 ORTHO05D006506 6.4e-122 441.8 388 61.3
PGR102G1412 Punica granatum HOM05D005230 ORTHO05D006506 5.6e-118 428.7 384 60.4
GSVIVG01002283001 Vitis vinifera HOM05D005230 ORTHO05D006506 3.7e-114 416.0 327 67.0
Nitab4.5_0002567g0160 Nicotiana tabacum HOM05D005230 ORTHO05D006506 8.9e-108 394.8 389 57.1
Zm00001eb051600 Zea mays HOM05D005230 ORTHO05D006506 8.9e-108 394.8 361 59.8
vmacro04223 Vaccinium macrocarpon HOM05D005230 ORTHO05D006506 1.7e-106 390.6 425 52.5
unitig_0.g309 Utricularia gibba HOM05D005230 ORTHO05D006506 8.3e-106 388.3 388 54.6
Pp3c16_600 Physcomitrium patens HOM05D005230 ORTHO05D006506 9.2e-105 384.8 384 51.6
Sc16g0010870 Simmondsia chinensis HOM05D005230 ORTHO05D006506 2.1e-104 383.6 311 63.3
Mapoly0070s0045 Marchantia polymorpha HOM05D005230 ORTHO05D006506 4.7e-101 372.5 387 51.2
C09p56810 Brassica napus HOM05D005230 ORTHO05D006506 4.4e-99 365.9 234 79.1
TAR628G1140 Trochodendron aralioides HOM05D005230 ORTHO05D006506 2.2e-90 337.0 297 59.6
SMO117G0151 Selaginella moellendorffii HOM05D005230 ORTHO05D006506 3.9e-87 326.2 385 42.9
Dinv24610 Davidia involucrata HOM05D005230 ORTHO05D006506 2.4e-73 280.4 327 50.2
BolC9t58535H Brassica oleracea HOM05D005230 ORTHO05D006506 4.0e-68 263.1 189 80.4
CBR_g54067 Chara braunii HOM05D005230 ORTHO05D006506 1.3e-63 248.1 386 38.9
Mapoly0050s0012 Marchantia polymorpha HOM05D005230 ORTHO05D006506 3.4e-59 233.4 242 52.5
Mapoly0050s0011 Marchantia polymorpha HOM05D005230 ORTHO05D006506 1.7e-58 231.1 330 41.8
Duzib150G0729 Durio zibethinus HOM05D005230 ORTHO05D006506 2.0e-43 181.0 160 61.9
Cre03.g207825 Chlamydomonas reinhardtii HOM05D005230 ORTHO05D006506 3.2e-41 173.7 433 35.1
MCO03G336 Micromonas commoda HOM05D005230 ORTHO05D006506 8.8e-39 165.6 392 29.3
Gohir.A05G264150 Gossypium hirsutum HOM05D005230 ORTHO05D006506 1.5e-38 164.9 123 66.7
CSS0018745 Camellia sinensis var. sinensis HOM05D005230 ORTHO05D006506 2.2e-37 161.0 149 58.4
FvH4_4g06340 Fragaria vesca HOM05D005230 ORTHO05D006506 5.2e-31 139.8 121 63.6
PRCOL_00006600 Prasinoderma coloniale HOM05D005230 ORTHO05D006506 4.4e-30 136.7 433 27.9
VMungo0720G0475 Vigna mungo HOM05D005230 ORTHO05D051605 2.7e-27 127.5 271 36.9
BcaC04g24210 Brassica carinata HOM05D005230 ORTHO05D006506 1.0e-23 115.5 68 91.2
Mapoly0070s0046 Marchantia polymorpha HOM05D005230 ORTHO05D006506 5.7e-22 109.8 82 57.3
VMungo0251G1518 Vigna mungo HOM05D005230 ORTHO05D051605 3.3e-17 94.0 222 32.9
Nn7g36957 Nelumbo nucifera HOM05D005230 ORTHO05D006506 1.6e-16 91.7 55 85.5
VMungo1309G2461 Vigna mungo HOM05D002467 ORTHO05D013374 4.7e-16 90.1 83 56.6
Sed0001059 Sechium edule HOM05D005230 ORTHO05D006506 4.0e-15 87.0 59 76.3
Psat2g003760 Pisum sativum HOM05D005230 ORTHO05D006506 4.1e-12 77.0 94 45.7
VMungo1383G0996 Vigna mungo HOM05D002467 ORTHO05D013374 4.1e-12 77.0 49 75.5
Dinv24611 Davidia involucrata HOM05D005230 ORTHO05D006506 1.3e-10 72.0 49 83.7
Psat0s3158g0040 Pisum sativum HOM05D005230 ORTHO05D320643 2.5e-09 67.8 60 55.0
Psat4g142680 Pisum sativum HOM05D000493 ORTHO05D001638 1.6e-08 65.1 61 54.1
Psat4g142760 Pisum sativum HOM05D000493 ORTHO05D004446 3.6e-08 63.9 67 47.8
TAR623G0477 Trochodendron aralioides HOM05D005230 ORTHO05D006506 1.0e-07 62.4 97 44.3
Psat0s472g0120 Pisum sativum HOM05D005230 ORTHO05D023087 1.8e-07 61.6 62 51.6
Peaxi162Scf00225g00424 Petunia axillaris HOM05D004145 ORTHO05D004879 6.8e-07 59.7 250 26.8
Aa31sc654G10 Aethionema arabicum HOM05D004145 ORTHO05D004879 3.4e-06 57.4 223 26.9
Lsat_1_v5_gn_6_96941 Lactuca sativa HOM05D004145 ORTHO05D004879 9.8e-06 55.8 217 26.3


User provided reference genes

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