Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT5G19430 Arabidopsis thaliana HOM05D004084 ORTHO05D004662 8.2e-135 483.8 257 100.0
Sp6g24980 Schrenkiella parvula HOM05D004084 ORTHO05D004662 1.1e-110 403.7 254 83.9
Carub.0006s1777 Capsella rubella HOM05D004084 ORTHO05D004662 1.4e-105 386.7 250 86.4
BraA03t10266Z Brassica rapa HOM05D004084 ORTHO05D004662 1.4e-102 376.7 252 80.6
BcaB01g05145 Brassica carinata HOM05D004084 ORTHO05D004662 9.2e-102 374.0 252 80.6
A03p09480 Brassica napus HOM05D004084 ORTHO05D004662 2.0e-101 372.9 252 80.2
C03p11060 Brassica napus HOM05D004084 ORTHO05D004662 4.5e-101 371.7 252 80.2
BolC3t13575H Brassica oleracea HOM05D004084 ORTHO05D004662 4.5e-101 371.7 252 80.2
AL6G30920 Arabidopsis lyrata HOM05D004084 ORTHO05D004662 9.8e-96 354.0 197 97.0
Thhalv10014461m.g Eutrema salsugineum HOM05D004084 ORTHO05D004662 2.2e-95 352.8 250 76.8
BcaNung06777 Brassica carinata HOM05D004084 ORTHO05D004662 1.1e-91 340.5 250 75.2
Aa31LG3G14920 Aethionema arabicum HOM05D004084 ORTHO05D004662 1.0e-89 334.0 232 72.4
Thhalv10014482m.g Eutrema salsugineum HOM05D004084 ORTHO05D004662 7.5e-88 327.8 239 70.7
Sp6g31330 Schrenkiella parvula HOM05D004084 ORTHO05D004662 8.3e-87 324.3 239 69.9
CARHR193510 Cardamine hirsuta HOM05D004084 ORTHO05D004662 2.7e-85 319.3 198 86.9
THA.LOC104824623 Tarenaya hassleriana HOM05D004084 ORTHO05D004662 7.8e-85 317.8 241 72.2
CARHR200800 Cardamine hirsuta HOM05D004084 ORTHO05D004662 2.6e-80 302.8 232 66.4
C03p06530 Brassica napus HOM05D004084 ORTHO05D004662 9.2e-78 294.3 264 65.2
BcaB01g04862 Brassica carinata HOM05D004084 ORTHO05D004662 4.6e-77 292.0 251 68.5
BraA10t44615Z Brassica rapa HOM05D004084 ORTHO05D004662 3.9e-76 288.9 238 73.1
A03p05580 Brassica napus HOM05D004084 ORTHO05D004662 5.1e-76 288.5 263 65.8
BolC9t59292H Brassica oleracea HOM05D004084 ORTHO05D004662 6.6e-76 288.1 239 72.4
C09p64590 Brassica napus HOM05D004084 ORTHO05D004662 8.6e-76 287.7 238 72.7
AT5G12310 Arabidopsis thaliana HOM05D004084 ORTHO05D004662 2.5e-75 286.2 241 63.5
Carub.0006s1082 Capsella rubella HOM05D004084 ORTHO05D004662 2.5e-75 286.2 253 62.5
A10p25510 Brassica napus HOM05D004084 ORTHO05D004662 1.1e-73 280.8 240 71.7
BolC3t13153H Brassica oleracea HOM05D004084 ORTHO05D004662 3.4e-72 275.8 264 62.1
Eucgr.B03731 Eucalyptus grandis HOM05D004084 ORTHO05D004662 8.6e-68 261.2 225 61.3
BraA03t09895Z Brassica rapa HOM05D004084 ORTHO05D004662 1.1e-67 260.8 244 64.3
Glyma.20G037400 Glycine max HOM05D004084 ORTHO05D004662 9.6e-67 257.7 232 60.3
Atru.chr4.1902 Acer truncatum HOM05D004084 ORTHO05D004662 2.1e-66 256.5 223 60.5
Manes.02G139800 Manihot esculenta HOM05D004084 ORTHO05D004662 3.6e-66 255.8 253 57.7
Rhsim13G0210600 Rhododendron simsii HOM05D004084 ORTHO05D004662 8.1e-66 254.6 243 58.8
Nitab4.5_0012538g0010 Nicotiana tabacum HOM05D004084 ORTHO05D004662 4.0e-65 252.3 229 59.4
Ciclev10016417m.g Citrus clementina HOM05D004084 ORTHO05D004662 8.9e-65 251.1 244 56.1
VMungo0540G1882 Vigna mungo HOM05D004084 ORTHO05D004662 8.9e-65 251.1 236 58.1
Atru.chr3.2757 Acer truncatum HOM05D004084 ORTHO05D004662 1.5e-64 250.4 232 58.2
Cfa009849 Carpinus fangiana HOM05D004084 ORTHO05D004662 2.6e-64 249.6 229 59.8
Nitab4.5_0000718g0220 Nicotiana tabacum HOM05D004084 ORTHO05D004662 5.8e-64 248.4 233 59.2
Psat5g181240 Pisum sativum HOM05D004084 ORTHO05D004662 9.9e-64 247.7 235 56.6
Thecc.09G249200 Theobroma cacao HOM05D004084 ORTHO05D004662 1.3e-63 247.3 251 54.2
CiPaw.14G113600 Carya illinoinensis HOM05D004084 ORTHO05D004662 2.9e-63 246.1 233 58.4
HanXRQChr14g0432231 Helianthus annuus HOM05D004084 ORTHO05D004662 8.4e-63 244.6 229 57.6
GSVIVG01037269001 Vitis vinifera HOM05D004084 ORTHO05D004662 1.1e-62 244.2 230 57.0
Dinv05100 Davidia involucrata HOM05D004084 ORTHO05D004662 1.4e-62 243.8 217 59.9
Sed0020433 Sechium edule HOM05D004084 ORTHO05D004662 2.4e-62 243.0 242 56.6
ClCG02G022880 Citrullus lanatus HOM05D004084 ORTHO05D004662 3.2e-62 242.7 247 54.7
SGA_v2.0_scaffold29G12252 Striga asiatica HOM05D004084 ORTHO05D004662 1.6e-61 240.4 225 57.3
Solyc11g064830.2 Solanum lycopersicum HOM05D004084 ORTHO05D004662 2.7e-61 239.6 222 59.5
Sopen11g024490 Solanum pennellii HOM05D004084 ORTHO05D004662 3.5e-61 239.2 222 59.0
Dinv36171 Davidia involucrata HOM05D004084 ORTHO05D004662 4.6e-61 238.8 241 55.6
Hma1.2p1_0129F.1_g060160 Hydrangea macrophylla HOM05D004084 ORTHO05D004662 4.6e-61 238.8 246 55.7
PGSC0003DMG400009461 Solanum tuberosum HOM05D004084 ORTHO05D004662 6.0e-61 238.4 222 59.0
MSTRG.21348 Avicennia marina HOM05D004084 ORTHO05D004662 1.0e-60 237.7 221 57.9
RcHm_v2.0_Chr5g0050631 Rosa chinensis HOM05D004084 ORTHO05D004662 1.3e-60 237.3 218 60.1
CANSAT54G0855 Cannabis sativa HOM05D004084 ORTHO05D004662 2.3e-60 236.5 229 57.6
Glyma.07G230600 Glycine max HOM05D004084 ORTHO05D004662 2.3e-60 236.5 237 56.5
MD11G1185700 Malus domestica HOM05D004084 ORTHO05D004662 2.3e-60 236.5 226 55.8
Potri.009G070600 Populus trichocarpa HOM05D004084 ORTHO05D004662 5.1e-60 235.3 244 55.7
TWI75G0849 Tripterygium wilfordii HOM05D004084 ORTHO05D004662 6.6e-60 235.0 244 60.2
PGR102G0788 Punica granatum HOM05D004084 ORTHO05D004662 2.5e-59 233.0 229 62.9
FAN21G2250 Fragaria x ananassa HOM05D004084 ORTHO05D004662 3.3e-59 232.6 239 54.8
TWI79G0099 Tripterygium wilfordii HOM05D004084 ORTHO05D004662 3.3e-59 232.6 215 58.1
FvH4_3g27900 Fragaria vesca HOM05D004084 ORTHO05D004662 4.3e-59 232.3 247 53.4
Phvul.006G030700 Phaseolus vulgaris HOM05D004084 ORTHO05D004662 5.6e-59 231.9 216 57.4
FAN16G3201 Fragaria x ananassa HOM05D004084 ORTHO05D004662 7.3e-59 231.5 221 58.8
Potri.001G275900 Populus trichocarpa HOM05D004084 ORTHO05D004662 7.3e-59 231.5 227 55.1
Lj1A284G15 Lonicera japonica HOM05D004084 ORTHO05D004662 9.6e-59 231.1 223 58.3
MBI13_g27798_MAGBIO Magnolia biondii HOM05D004084 ORTHO05D004662 9.6e-59 231.1 220 58.2
TAR623G1229 Trochodendron aralioides HOM05D004084 ORTHO05D004662 9.6e-59 231.1 233 54.1
Ca_03985_v3 Cicer arietinum L. HOM05D004084 ORTHO05D004662 3.6e-58 229.2 234 53.8
PGSC0003DMG400022698 Solanum tuberosum HOM05D004084 ORTHO05D004662 3.6e-58 229.2 233 54.1
FAN25G0474 Fragaria x ananassa HOM05D004084 ORTHO05D004662 1.1e-57 227.6 217 57.6
Gohir.D09G106500 Gossypium hirsutum HOM05D004084 ORTHO05D004662 1.1e-57 227.6 225 62.2
Gorai.006G124000 Gossypium raimondii HOM05D004084 ORTHO05D004662 1.4e-57 227.3 225 62.2
Nitab4.5_0001500g0060 Nicotiana tabacum HOM05D001938 ORTHO05D004662 1.4e-57 227.3 227 54.2
MSTRG.17633 Avicennia marina HOM05D004084 ORTHO05D004662 6.9e-57 224.9 211 59.2
Nitab4.5_0000730g0060 Nicotiana tabacum HOM05D001938 ORTHO05D004662 1.2e-56 224.2 226 54.9
Prupe.4G267100 Prunus persica HOM05D004084 ORTHO05D004662 2.0e-56 223.4 221 55.2
MELO3C014562.2 Cucumis melo HOM05D004084 ORTHO05D004662 2.6e-56 223.0 225 54.7
ECA238G4029 Erigeron canadensis HOM05D004084 ORTHO05D004662 2.6e-56 223.0 225 58.2
Duzib150G1594 Durio zibethinus HOM05D004084 ORTHO05D004662 4.5e-56 222.2 252 50.4
Duzib168G1105 Durio zibethinus HOM05D004084 ORTHO05D004662 4.5e-56 222.2 250 51.2
Gohir.A09G110200 Gossypium hirsutum HOM05D004084 ORTHO05D004662 5.8e-56 221.9 218 62.4
Solyc01g008810.3 Solanum lycopersicum HOM05D004084 ORTHO05D004662 7.6e-56 221.5 215 55.8
Sopen01g004320 Solanum pennellii HOM05D004084 ORTHO05D004662 7.6e-56 221.5 215 55.8
HanXRQChr06g0182501 Helianthus annuus HOM05D004084 ORTHO05D004662 1.7e-55 220.3 226 56.6
MSTRG.17516 Avicennia marina HOM05D004084 ORTHO05D004662 2.2e-55 219.9 211 57.8
CsaV3_6G039010 Cucumis sativus L. HOM05D004084 ORTHO05D004662 2.9e-55 219.5 225 54.2
Gohir.A13G219100 Gossypium hirsutum HOM05D004084 ORTHO05D004662 2.9e-55 219.5 216 54.6
PGR119G1682 Punica granatum HOM05D004084 ORTHO05D004662 6.4e-55 218.4 220 59.1
PGR123G0005 Punica granatum HOM05D004084 ORTHO05D004662 6.4e-55 218.4 220 59.1
Lj6g0014777 Lotus japonicus HOM05D004084 ORTHO05D004662 8.4e-55 218.0 237 57.4
Cc08_g06320 Coffea canephora HOM05D004084 ORTHO05D004662 1.1e-54 217.6 220 55.0
Gorai.013G253900 Gossypium raimondii HOM05D004084 ORTHO05D004662 1.1e-54 217.6 222 53.6
Peaxi162Scf00004g04520 Petunia axillaris HOM05D004084 ORTHO05D004662 1.4e-54 217.2 259 47.5
Os01g0954400 Oryza sativa ssp. japonica HOM05D004084 ORTHO05D004662 4.2e-54 215.7 216 56.9
Gohir.D13G222800 Gossypium hirsutum HOM05D004084 ORTHO05D004662 7.1e-54 214.9 222 53.2
Lsat_1_v5_gn_2_32240 Lactuca sativa HOM05D004084 ORTHO05D004662 9.3e-54 214.5 232 60.3
arahy.Tifrunner.gnm1.ann1.X3DJVQ Arachis hypogaea HOM05D004084 ORTHO05D004662 2.7e-53 213.0 252 51.2
Migut.N02373 Erythranthe guttata HOM05D004084 ORTHO05D004662 2.7e-53 213.0 219 56.6
Ah.04g161980 Amaranthus hybridus HOM05D004084 ORTHO05D004662 3.5e-53 212.6 267 48.7
Actinidia06961 Actinidia chinensis HOM05D004084 ORTHO05D004662 6.0e-53 211.8 195 58.5
Sc06g0004680 Simmondsia chinensis HOM05D004084 ORTHO05D004662 6.0e-53 211.8 215 56.3
EL10Ac4g10147 Beta vulgaris HOM05D004084 ORTHO05D004662 1.0e-52 211.1 234 54.7
Lalb_Chr10g0106291 Lupinus albus HOM05D004084 ORTHO05D004662 1.3e-52 210.7 262 54.6
Hund07438 Selenicereus undatus HOM05D004084 ORTHO05D004662 1.8e-52 210.3 236 51.3
Oeu016695.1 Olea europaea HOM05D004084 ORTHO05D004662 5.1e-52 208.8 225 52.9
Oeu025904.1 Olea europaea HOM05D004084 ORTHO05D004662 3.3e-51 206.1 232 52.6
Migut.D00657 Erythranthe guttata HOM05D004084 ORTHO05D004662 2.1e-50 203.4 217 52.5
Peaxi162Scf00032g02420 Petunia axillaris HOM05D004084 ORTHO05D004662 2.1e-50 203.4 264 49.2
MBI19_g16738_MAGBIO Magnolia biondii HOM05D004084 ORTHO05D004662 3.7e-50 202.6 216 54.2
Zm00001eb140640 Zea mays HOM05D004084 ORTHO05D004662 3.7e-50 202.6 227 53.3
unitig_8.g3650 Utricularia gibba HOM05D004084 ORTHO05D000654 8.1e-50 201.4 206 54.4
ATR0680G173 Amborella trichopoda HOM05D004084 ORTHO05D004662 1.1e-49 201.1 235 48.9
PSO339G4433 Papaver somniferum HOM05D004084 ORTHO05D004662 1.8e-49 200.3 200 52.5
BcaB01g05406 Brassica carinata HOM05D004084 ORTHO05D004662 5.3e-49 198.7 263 54.0
DCAR_023764 Daucus carota HOM05D000857 ORTHO05D004662 7.6e-48 194.9 190 60.5
SGA_v2.0_scaffold310G48197 Striga asiatica HOM05D004084 ORTHO05D004662 1.3e-47 194.1 213 51.2
Haze_23226 Corylus avellana HOM05D004084 ORTHO05D004662 6.4e-47 191.8 192 57.3
SGA_v2.0_scaffold8G04547 Striga asiatica HOM05D001938 ORTHO05D001965 3.5e-45 186.0 218 51.8
QL01p017232 Quercus lobata HOM05D004084 ORTHO05D004662 5.1e-44 182.2 194 57.7
arahy.Tifrunner.gnm1.ann1.6L2V6B Arachis hypogaea HOM05D004084 ORTHO05D004662 8.7e-44 181.4 228 49.6
COL.COLO4_35673 Corchorus olitorius HOM05D004084 ORTHO05D004662 7.4e-43 178.3 191 53.9
HPP92_006725 Vanilla planifolia HOM05D004084 ORTHO05D004662 1.6e-42 177.2 148 58.8
PSO384G1598 Papaver somniferum HOM05D004084 ORTHO05D004662 6.2e-42 175.3 208 48.6
AagrBONN_evm.TU.Sc2ySwM_228.3727 Anthoceros agrestis HOM05D004084 ORTHO05D004662 8.2e-42 174.9 145 56.6
Sabra09G0053400 Salix brachista HOM05D004084 ORTHO05D004662 2.4e-41 173.3 228 45.6
Pp3c26_14330 Physcomitrium patens HOM05D004084 ORTHO05D004662 5.3e-41 172.2 193 48.2
SMO337G0017 Selaginella moellendorffii HOM05D004084 ORTHO05D004662 2.0e-40 170.2 191 49.2
SEGI_32483 Sequoiadendron giganteum HOM05D004084 ORTHO05D004662 3.4e-40 169.5 143 58.0
Nn7g36697 Nelumbo nucifera HOM05D004084 ORTHO05D004662 6.5e-39 165.2 170 52.4
Hund21983 Selenicereus undatus HOM05D004084 ORTHO05D004662 1.2e-37 161.0 201 54.2
SEGI_38021 Sequoiadendron giganteum HOM05D004084 ORTHO05D004662 4.6e-37 159.1 187 51.3
CBR_g131 Chara braunii HOM05D004084 ORTHO05D004662 3.9e-36 156.0 203 46.8
CDE11G0877 Ceratophyllum demersum HOM05D004084 ORTHO05D004662 3.3e-35 152.9 189 48.7
Cre13.g604750 Chlamydomonas reinhardtii HOM05D004084 ORTHO05D004662 4.1e-33 146.0 160 51.9
Actinidia16378 Actinidia chinensis HOM05D004084 ORTHO05D004662 6.9e-33 145.2 84 72.6
AL6G23110 Arabidopsis lyrata HOM05D004084 ORTHO05D004662 2.9e-31 139.8 149 57.0
CDE11G0903 Ceratophyllum demersum HOM05D004084 ORTHO05D004662 7.9e-29 131.7 119 56.3
MD03G1166600 Malus domestica HOM05D004084 ORTHO05D004662 5.7e-27 125.6 149 52.3
CDE11G0350 Ceratophyllum demersum HOM05D004084 ORTHO05D004662 9.7e-27 124.8 122 53.3
CSS0029213 Camellia sinensis var. sinensis HOM05D004084 ORTHO05D004662 2.2e-26 123.6 150 55.3
MD03G1166700 Malus domestica HOM05D004084 ORTHO05D004662 1.1e-25 121.3 73 67.1
CSS0038115 Camellia sinensis var. sinensis HOM05D004084 ORTHO05D004662 4.1e-25 119.4 84 63.1
PRCOL_00000691 Prasinoderma coloniale HOM05D004084 ORTHO05D004662 2.0e-24 117.1 194 38.7
Oeu061709.1 Olea europaea HOM05D004084 ORTHO05D004662 3.2e-22 109.8 148 54.1
AUR62000187 Chenopodium quinoa HOM05D004084 ORTHO05D004662 9.4e-22 108.2 167 45.5
CSS0040984 Camellia sinensis var. sinensis HOM05D004084 ORTHO05D004662 7.9e-21 105.1 149 51.0
Phvul.006G030800 Phaseolus vulgaris HOM05D004084 ORTHO05D004662 1.0e-20 104.8 143 48.3
TPR.G27271 Trifolium pratense HOM05D004084 ORTHO05D004662 5.1e-20 102.4 140 49.3
Cc00_g22040 Coffea canephora HOM05D004084 ORTHO05D004662 1.5e-19 100.9 60 70.0
CARHR193520 Cardamine hirsuta HOM05D004084 ORTHO05D004662 2.6e-19 100.1 62 75.8
arahy.Tifrunner.gnm1.ann1.QA9X4A Arachis hypogaea HOM05D004084 ORTHO05D004662 1.7e-18 97.4 156 46.8
EL10Ac8g18304 Beta vulgaris HOM05D004084 ORTHO05D004662 4.1e-17 92.8 93 47.3
Sabra16G0170200 Salix brachista HOM05D004084 ORTHO05D004662 1.2e-16 91.3 179 41.9
Aqoxy2G00377 Aquilegia oxysepala HOM05D004084 ORTHO05D004662 8.5e-15 85.1 229 31.9
EL10Ac8g18303 Beta vulgaris HOM05D004084 ORTHO05D004662 1.9e-14 84.0 107 40.2
SHI55208 Sapria himalayana HOM05D004084 ORTHO05D004662 5.5e-14 82.4 139 41.7
BraA10t44098Z Brassica rapa HOM05D004084 ORTHO05D004662 6.1e-13 79.0 91 52.7
A10p20270 Brassica napus HOM05D004084 ORTHO05D004662 2.3e-12 77.0 91 51.6
arahy.Tifrunner.gnm1.ann1.57BBZ5 Arachis hypogaea HOM05D004084 ORTHO05D004662 3.0e-12 76.6 88 53.4
Nn7g36696 Nelumbo nucifera HOM05D004084 ORTHO05D004662 2.0e-11 73.9 94 47.9
Pp3c4_28300 Physcomitrium patens HOM05D004084 ORTHO05D004662 1.3e-10 71.2 55 54.5
AUR62006538 Chenopodium quinoa HOM05D001938 ORTHO05D001965 4.8e-10 69.3 99 49.5
QL01p017234 Quercus lobata HOM05D004084 ORTHO05D004662 1.8e-09 67.4 63 47.6
Sed0017072 Sechium edule HOM05D004084 ORTHO05D004662 1.6e-08 64.3 114 34.2
MBI19_g25614_MAGBIO Magnolia biondii HOM05D004084 ORTHO05D004662 1.3e-07 61.2 54 53.7
SalBow6G0813 Salvia bowleyana HOM05D004084 ORTHO05D004662 1.3e-07 61.2 87 46.0
Haze_23225 Corylus avellana HOM05D004084 ORTHO05D004662 2.2e-07 60.5 38 65.8


User provided reference genes

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