Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT5G19150 Arabidopsis thaliana HOM05D004989 ORTHO05D006335 3.4e-203 711.4 366 100.0
AL6G30570 Arabidopsis lyrata HOM05D004989 ORTHO05D006335 1.8e-191 672.5 371 94.1
Thhalv10013830m.g Eutrema salsugineum HOM05D004989 ORTHO05D006335 7.0e-188 660.6 371 93.5
Carub.0006s1748 Capsella rubella HOM05D004989 ORTHO05D006335 2.5e-185 652.1 373 92.5
BcaB01g04874 Brassica carinata HOM05D004989 ORTHO05D006335 3.0e-183 645.2 371 90.0
Sp6g25210 Schrenkiella parvula HOM05D004989 ORTHO05D006335 1.5e-182 642.9 373 90.3
CARHR193800 Cardamine hirsuta HOM05D004989 ORTHO05D006335 7.5e-182 640.6 371 89.8
BraA03t10257Z Brassica rapa HOM05D004989 ORTHO05D006335 3.7e-181 638.3 385 87.5
BolC3t13560H Brassica oleracea HOM05D004989 ORTHO05D006335 1.8e-180 636.0 371 89.2
BcaB01g05136 Brassica carinata HOM05D004989 ORTHO05D006335 4.5e-179 631.3 371 88.4
A03p09380 Brassica napus HOM05D004989 ORTHO05D006335 4.5e-179 631.3 362 90.9
Aa31LG11G10490 Aethionema arabicum HOM05D004989 ORTHO05D006335 8.5e-178 627.1 372 87.1
C03p10950 Brassica napus HOM05D004989 ORTHO05D006335 2.7e-176 622.1 380 86.1
C03p10960 Brassica napus HOM05D004989 ORTHO05D006335 1.5e-169 599.7 371 85.2
BraA02t05485Z Brassica rapa HOM05D004989 ORTHO05D006335 2.7e-163 578.9 322 91.9
BcaC03g13646 Brassica carinata HOM05D004989 ORTHO05D006335 6.6e-162 574.3 322 91.0
BolC2t06940H Brassica oleracea HOM05D004989 ORTHO05D006335 6.6e-162 574.3 322 91.0
BcaB05g23373 Brassica carinata HOM05D004989 ORTHO05D006335 1.8e-159 566.2 322 90.4
A02p05270 Brassica napus HOM05D004989 ORTHO05D006335 1.2e-158 563.5 337 85.5
THA.LOC104818802 Tarenaya hassleriana HOM05D004989 ORTHO05D006335 5.8e-158 561.2 388 77.1
C02p10390 Brassica napus HOM05D004989 ORTHO05D006335 2.9e-157 558.9 314 90.8
MD16G1186000 Malus domestica HOM05D004989 ORTHO05D006335 1.3e-141 506.9 384 70.6
CiPaw.02G093300 Carya illinoinensis HOM05D004989 ORTHO05D006335 1.1e-140 503.8 358 72.9
GSVIVG01017902001 Vitis vinifera HOM05D004989 ORTHO05D006335 1.4e-140 503.4 366 73.5
Cfa015597 Carpinus fangiana HOM05D004989 ORTHO05D006335 9.2e-140 500.7 382 71.5
Dinv38405 Davidia involucrata HOM05D004989 ORTHO05D006335 4.6e-139 498.4 357 73.1
CSS0017868 Camellia sinensis var. sinensis HOM05D004989 ORTHO05D006335 1.0e-138 497.3 361 71.7
Lalb_Chr18g0056141 Lupinus albus HOM05D004989 ORTHO05D006335 2.3e-138 496.1 355 73.0
VMungo1215G0587 Vigna mungo HOM05D004989 ORTHO05D006335 5.1e-138 495.0 356 73.3
arahy.Tifrunner.gnm1.ann1.L7AGGG Arachis hypogaea HOM05D004989 ORTHO05D006335 6.6e-138 494.6 362 72.7
Prupe.1G152800 Prunus persica HOM05D004989 ORTHO05D006335 1.1e-137 493.8 378 70.6
Thecc.04G224100 Theobroma cacao HOM05D004989 ORTHO05D006335 1.1e-137 493.8 381 69.6
Gohir.D02G037100 Gossypium hirsutum HOM05D004989 ORTHO05D006335 1.5e-137 493.4 380 69.7
Gorai.005G041000 Gossypium raimondii HOM05D004989 ORTHO05D006335 1.5e-137 493.4 380 69.7
C03p10860 Brassica napus HOM05D004989 ORTHO05D006335 1.9e-137 493.0 363 75.2
Potri.008G203600 Populus trichocarpa HOM05D004989 ORTHO05D006335 1.9e-137 493.0 354 72.3
arahy.Tifrunner.gnm1.ann1.8A1ZYN Arachis hypogaea HOM05D004989 ORTHO05D006335 5.6e-137 491.5 362 72.4
EL10Ac3g05973 Beta vulgaris HOM05D004989 ORTHO05D006335 5.6e-137 491.5 371 69.0
PSO017G3853 Papaver somniferum HOM05D004989 ORTHO05D006335 5.6e-137 491.5 368 70.4
TAR365G0616 Trochodendron aralioides HOM05D004989 ORTHO05D006335 7.3e-137 491.1 360 71.4
QL06p003872 Quercus lobata HOM05D004989 ORTHO05D006335 9.6e-137 490.7 394 68.5
Dinv44490 Davidia involucrata HOM05D004989 ORTHO05D006335 1.2e-136 490.3 357 72.0
Lj6g0002948 Lotus japonicus HOM05D004989 ORTHO05D006335 2.8e-136 489.2 358 72.6
CSS0000312 Camellia sinensis var. sinensis HOM05D004989 ORTHO05D006335 4.7e-136 488.4 357 71.7
Medtr2g022530 Medicago truncatula HOM05D004989 ORTHO05D006335 4.7e-136 488.4 353 72.5
Gohir.A02G029300 Gossypium hirsutum HOM05D004989 ORTHO05D006335 1.1e-135 487.3 380 68.9
BcaB01g05294 Brassica carinata HOM05D004989 ORTHO05D006335 1.8e-135 486.5 377 72.7
RcHm_v2.0_Chr4g0417841 Rosa chinensis HOM05D004989 ORTHO05D006335 1.8e-135 486.5 380 68.2
FvH4_4g14760 Fragaria vesca HOM05D004989 ORTHO05D006335 6.8e-135 484.6 360 70.8
Glyma.07G257800 Glycine max HOM05D004989 ORTHO05D006335 6.8e-135 484.6 352 71.9
Aqoxy3G00936 Aquilegia oxysepala HOM05D004989 ORTHO05D006335 8.9e-135 484.2 357 70.6
Manes.03G183100 Manihot esculenta HOM05D004989 ORTHO05D006335 8.9e-135 484.2 355 71.8
CANSAT78G0752 Cannabis sativa HOM05D004989 ORTHO05D006335 1.2e-134 483.8 381 69.0
Atru.chr4.2544 Acer truncatum HOM05D004989 ORTHO05D006335 2.0e-134 483.0 312 78.2
Cc03_g03230 Coffea canephora HOM05D004989 ORTHO05D006335 1.3e-133 480.3 364 69.5
COL.COLO4_26626 Corchorus olitorius HOM05D004989 ORTHO05D006335 2.2e-133 479.6 414 64.0
Glyma.17G016200 Glycine max HOM05D004989 ORTHO05D006335 4.9e-133 478.4 352 71.6
Peaxi162Scf00134g02033 Petunia axillaris HOM05D004989 ORTHO05D006335 6.4e-133 478.0 358 69.8
MELO3C006557.2 Cucumis melo HOM05D004989 ORTHO05D006335 1.1e-132 477.2 360 70.6
CsaV3_3G013610 Cucumis sativus L. HOM05D004989 ORTHO05D006335 1.1e-132 477.2 360 70.3
Phvul.003G091700 Phaseolus vulgaris HOM05D004989 ORTHO05D006335 2.4e-132 476.1 321 75.4
Sed0017941 Sechium edule HOM05D004989 ORTHO05D006335 2.4e-132 476.1 357 69.7
HanXRQChr12g0359311 Helianthus annuus HOM05D004989 ORTHO05D006335 9.3e-132 474.2 359 69.1
Ca_00634_v3 Cicer arietinum L. HOM05D004989 ORTHO05D006335 2.1e-131 473.0 365 68.5
ECA234G2869 Erigeron canadensis HOM05D004989 ORTHO05D006335 2.1e-131 473.0 326 73.3
TWI73G0966 Tripterygium wilfordii HOM05D004989 ORTHO05D006335 4.6e-131 471.9 359 67.7
C03p10910 Brassica napus HOM05D004989 ORTHO05D006335 6.0e-131 471.5 257 92.2
Eucgr.B01122 Eucalyptus grandis HOM05D004989 ORTHO05D006335 1.0e-130 470.7 356 69.4
CDE07G1289 Ceratophyllum demersum HOM05D004989 ORTHO05D006335 1.3e-130 470.3 357 69.7
Migut.G00301 Erythranthe guttata HOM05D004989 ORTHO05D006335 1.7e-130 469.9 364 68.4
MBI14_g28267_MAGBIO Magnolia biondii HOM05D004989 ORTHO05D006335 3.9e-130 468.8 356 68.8
Nn1g02182 Nelumbo nucifera HOM05D004989 ORTHO05D006335 6.6e-130 468.0 365 66.0
CAN.G69.27 Capsicum annuum HOM05D004989 ORTHO05D006335 8.7e-130 467.6 314 74.2
AUR62026218 Chenopodium quinoa HOM05D004989 ORTHO05D006335 1.1e-129 467.2 359 68.5
FAN17G0130 Fragaria x ananassa HOM05D004989 ORTHO05D006335 2.5e-129 466.1 378 66.7
Sopen01g031620 Solanum pennellii HOM05D004989 ORTHO05D006335 7.3e-129 464.5 314 73.9
SalBow2G0224 Salvia bowleyana HOM05D004989 ORTHO05D006335 1.3e-128 463.8 371 66.3
Sabra08G0157900 Salix brachista HOM05D004989 ORTHO05D006335 1.6e-128 463.4 407 62.9
Solyc01g079860.3 Solanum lycopersicum HOM05D004989 ORTHO05D006335 1.6e-128 463.4 314 74.2
PSO478G2898 Papaver somniferum HOM05D004989 ORTHO05D006335 2.8e-128 462.6 317 74.4
vmacro15315 Vaccinium macrocarpon HOM05D004989 ORTHO05D006335 2.8e-128 462.6 356 68.3
MSTRG.4001 Avicennia marina HOM05D004989 ORTHO05D006335 1.5e-126 456.8 359 67.4
Zm00001eb168810 Zea mays HOM05D004989 ORTHO05D006335 4.4e-126 455.3 336 68.5
Hund12013 Selenicereus undatus HOM05D004989 ORTHO05D006335 5.8e-126 454.9 317 71.6
Os11g0276300 Oryza sativa ssp. japonica HOM05D004989 ORTHO05D006335 1.7e-125 453.4 370 63.8
MSTRG.10011 Avicennia marina HOM05D004989 ORTHO05D006335 2.2e-125 453.0 314 74.2
RcHm_v2.0_Chr0c32g0501471 Rosa chinensis HOM05D004989 ORTHO05D006335 2.9e-125 452.6 370 65.9
Ah.07g202120 Amaranthus hybridus HOM05D004989 ORTHO05D006335 1.1e-124 450.7 346 67.9
HPP92_005520 Vanilla planifolia HOM05D004989 ORTHO05D006335 1.1e-124 450.7 361 66.5
unitig_736.g22488 Utricularia gibba HOM05D004989 ORTHO05D006335 9.3e-124 447.6 359 65.2
RcHm_v2.0_Chr0c32g0501661 Rosa chinensis HOM05D004989 ORTHO05D006335 1.6e-123 446.8 353 69.1
FAN22G1009 Fragaria x ananassa HOM05D004989 ORTHO05D006335 6.0e-123 444.9 377 64.5
Nitab4.5_0005927g0020 Nicotiana tabacum HOM05D004989 ORTHO05D006335 7.9e-123 444.5 394 63.2
Rhsim02G0020900 Rhododendron simsii HOM05D004989 ORTHO05D006335 1.7e-122 443.4 394 60.9
Ciclev10005119m.g Citrus clementina HOM05D004989 ORTHO05D006335 3.9e-122 442.2 317 72.6
Nitab4.5_0000630g0050 Nicotiana tabacum HOM05D004989 ORTHO05D006335 2.5e-121 439.5 290 76.9
PGSC0003DMG400009024 Solanum tuberosum HOM05D004989 ORTHO05D006335 2.5e-121 439.5 292 76.0
ATR0743G104 Amborella trichopoda HOM05D004989 ORTHO05D006335 3.3e-121 439.1 349 65.6
Oeu042787.2 Olea europaea HOM05D004989 ORTHO05D006335 9.0e-119 431.0 428 56.3
Lj6g0017812 Lotus japonicus HOM05D004989 ORTHO05D006335 2.6e-118 429.5 355 64.5
RcHm_v2.0_Chr3g0483801 Rosa chinensis HOM05D004989 ORTHO05D006335 3.4e-118 429.1 284 76.8
Haze_00947 Corylus avellana HOM05D004989 ORTHO05D006335 1.2e-115 420.6 351 66.1
Actinidia36991 Actinidia chinensis HOM05D004989 ORTHO05D006335 1.8e-114 416.8 351 66.4
Sc13g0004100 Simmondsia chinensis HOM05D004989 ORTHO05D006335 1.8e-114 416.8 313 71.2
Psat1g182800 Pisum sativum HOM05D004989 ORTHO05D006335 6.5e-109 398.3 255 77.6
Lj6A574T37 Lonicera japonica HOM05D004989 ORTHO05D006335 1.2e-107 394.0 250 78.4
Hma1.2p1_2553F.1_g324330 Hydrangea macrophylla HOM05D004989 ORTHO05D006335 1.1e-105 387.5 257 77.8
Mapoly0063s0079 Marchantia polymorpha HOM05D004989 ORTHO05D006335 1.0e-101 374.4 317 60.9
SMO361G0104 Selaginella moellendorffii HOM05D004989 ORTHO05D006335 2.9e-101 372.9 306 60.5
SHI00391 Sapria himalayana HOM05D004989 ORTHO05D006335 7.4e-97 358.2 288 63.5
CBR_g26053 Chara braunii HOM05D004989 ORTHO05D006335 4.5e-94 349.0 328 54.9
PGR142G2933 Punica granatum HOM05D004989 ORTHO05D006335 2.6e-89 333.2 357 54.1
Duzib151G0886 Durio zibethinus HOM05D004989 ORTHO05D006335 2.2e-88 330.1 386 52.8
ClCG05G005360 Citrullus lanatus HOM05D004989 ORTHO05D006335 3.7e-88 329.3 243 70.4
HPP92_005588 Vanilla planifolia HOM05D004989 ORTHO05D006335 5.9e-86 322.0 309 58.6
Pp3c8_1650 Physcomitrium patens HOM05D004989 ORTHO05D006335 3.2e-84 316.2 283 56.5
AagrBONN_evm.TU.Sc2ySwM_344.1251 Anthoceros agrestis HOM05D004989 ORTHO05D006335 1.4e-82 310.8 324 52.8
SGA_v2.0_scaffold39G15320 Striga asiatica HOM05D004989 ORTHO05D006335 2.6e-81 306.6 199 78.4
arahy.Tifrunner.gnm1.ann1.BS3LH0 Arachis hypogaea HOM05D004989 ORTHO05D006335 1.7e-80 303.9 362 50.8
FAN07G2774 Fragaria x ananassa HOM05D004989 ORTHO05D006335 4.4e-73 279.3 268 57.8
Hma1.2p1_2553F.1_g324320 Hydrangea macrophylla HOM05D004989 ORTHO05D006335 9.7e-73 278.1 201 72.6
TPR.G28611 Trifolium pratense HOM05D004989 ORTHO05D006739 3.2e-68 263.1 179 76.0
arahy.Tifrunner.gnm1.ann1.J5ZRE9 Arachis hypogaea HOM05D004989 ORTHO05D006335 8.8e-66 255.0 190 68.9
Cre06.g250500 Chlamydomonas reinhardtii HOM05D004989 ORTHO05D006335 7.0e-63 245.4 339 40.1
arahy.Tifrunner.gnm1.ann1.HR1U72 Arachis hypogaea HOM05D004989 ORTHO05D006335 9.1e-63 245.0 189 67.7
Cpa.g.sc147.7 Carica papaya HOM05D004989 ORTHO05D006335 1.7e-61 240.7 169 74.0
Ca_00654_v3 Cicer arietinum L. HOM05D004989 ORTHO05D006335 8.0e-59 231.9 201 64.2
MCO05G313 Micromonas commoda HOM05D004989 ORTHO05D006335 1.4e-58 231.1 351 39.9
SEGI_35556 Sequoiadendron giganteum HOM05D004989 ORTHO05D006335 8.8e-58 228.4 203 61.6
TPR.G30683 Trifolium pratense HOM05D004989 ORTHO05D006335 1.3e-56 224.6 168 69.0
Hma1.2p1_0995F.1_g245810 Hydrangea macrophylla HOM05D004989 ORTHO05D006335 3.5e-54 216.5 169 68.0
PRCOL_00001617 Prasinoderma coloniale HOM05D004989 ORTHO05D006335 3.8e-53 213.0 357 38.4
SEGI_27897 Sequoiadendron giganteum HOM05D004989 ORTHO05D006335 1.8e-50 204.1 133 73.7
SEGI_07547 Sequoiadendron giganteum HOM05D004989 ORTHO05D006335 5.7e-49 199.1 170 61.2
Cfa024379 Carpinus fangiana HOM05D004989 ORTHO05D006335 3.5e-46 189.9 296 37.8
Atru.chr4.2545 Acer truncatum HOM05D004989 ORTHO05D006335 2.3e-45 187.2 182 59.9
Haze_26760 Corylus avellana HOM05D004980 ORTHO05D006505 4.3e-44 183.0 272 40.8
Hund03167 Selenicereus undatus HOM05D004989 ORTHO05D006335 2.1e-43 180.6 121 71.1
Cre05.g234664 Chlamydomonas reinhardtii HOM05D004989 ORTHO05D006335 2.4e-39 167.2 363 33.3
SEGI_12399 Sequoiadendron giganteum HOM05D004989 ORTHO05D006335 6.8e-34 149.1 129 60.5
Atru.chr4.2547 Acer truncatum HOM05D004989 ORTHO05D000586 5.8e-33 146.0 125 61.6
Cfa015379 Carpinus fangiana HOM05D000407 ORTHO05D002981 3.3e-28 130.2 162 48.8
Cpa.g.sc147.5 Carica papaya HOM05D004989 ORTHO05D006335 2.6e-25 120.6 94 69.1
TPR.G30666 Trifolium pratense HOM05D004989 ORTHO05D006335 1.9e-23 114.4 87 69.0
Actinidia08511 Actinidia chinensis HOM05D004989 ORTHO05D006335 1.7e-21 107.8 308 32.8
Cpa.g.sc147.6 Carica papaya HOM05D004989 ORTHO05D006335 1.5e-20 104.8 67 74.6
CBR_g19747 Chara braunii HOM05D000409 ORTHO05D000184 6.2e-19 99.4 126 46.8
AUR62026378 Chenopodium quinoa HOM05D004989 ORTHO05D006335 3.5e-14 83.6 71 60.6
FAN07G1160 Fragaria x ananassa HOM05D004989 ORTHO05D006335 1.3e-08 65.1 47 68.1
A10p20470 Brassica napus HOM05D004989 ORTHO05D039594 2.4e-07 60.8 42 76.2


User provided reference genes

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