Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT5G18410 Arabidopsis thaliana HOM05D002281 ORTHO05D005599 0.0e+00 2536.5 1283 100.0
Carub.0006s1667 Capsella rubella HOM05D002281 ORTHO05D005599 0.0e+00 2523.8 1283 99.2
AL6G29660 Arabidopsis lyrata HOM05D002281 ORTHO05D005599 0.0e+00 2517.3 1287 99.1
CARHR194610 Cardamine hirsuta HOM05D002281 ORTHO05D005599 0.0e+00 2503.0 1283 98.5
Thhalv10012457m.g Eutrema salsugineum HOM05D002281 ORTHO05D005599 0.0e+00 2493.8 1284 98.1
BolC3t13512H Brassica oleracea HOM05D002281 ORTHO05D005599 0.0e+00 2474.1 1292 97.0
BraA03t10208Z Brassica rapa HOM05D002281 ORTHO05D005599 0.0e+00 2467.6 1295 96.8
Sp6g25910 Schrenkiella parvula HOM05D002281 ORTHO05D005599 0.0e+00 2448.3 1286 96.8
A03p08830 Brassica napus HOM05D002281 ORTHO05D005599 0.0e+00 2416.0 1290 95.4
C03p10320 Brassica napus HOM05D002281 ORTHO05D005599 0.0e+00 2415.6 1293 95.3
BcaB01g05191 Brassica carinata HOM05D002281 ORTHO05D005599 0.0e+00 2382.4 1293 94.3
THA.LOC104820753 Tarenaya hassleriana HOM05D002281 ORTHO05D005599 0.0e+00 2378.6 1283 93.1
Gohir.A13G102900 Gossypium hirsutum HOM05D002281 ORTHO05D005599 0.0e+00 2246.5 1284 86.8
Gorai.013G119000 Gossypium raimondii HOM05D002281 ORTHO05D005599 0.0e+00 2244.9 1284 86.5
Gohir.D13G106101 Gossypium hirsutum HOM05D002281 ORTHO05D005599 0.0e+00 2241.8 1284 86.4
Thecc.05G264800 Theobroma cacao HOM05D002281 ORTHO05D005599 0.0e+00 2229.9 1285 86.3
Atru.chr2.1138 Acer truncatum HOM05D002281 ORTHO05D005599 0.0e+00 2209.9 1284 85.5
Cfa006304 Carpinus fangiana HOM05D002281 ORTHO05D005599 0.0e+00 2204.9 1285 85.2
CANSAT54G0020 Cannabis sativa HOM05D002281 ORTHO05D005599 0.0e+00 2202.9 1284 84.7
Dinv05786 Davidia involucrata HOM05D002281 ORTHO05D005599 0.0e+00 2200.2 1285 84.9
Potri.019G025200 Populus trichocarpa HOM05D002281 ORTHO05D005599 0.0e+00 2193.7 1285 84.6
Manes.09G145500 Manihot esculenta HOM05D002281 ORTHO05D005599 0.0e+00 2191.8 1285 84.2
Duzib106G1897 Durio zibethinus HOM05D002281 ORTHO05D005599 0.0e+00 2187.5 1284 84.8
GSVIVG01026355001 Vitis vinifera HOM05D002281 ORTHO05D005599 0.0e+00 2186.8 1299 83.4
CSS0028465 Camellia sinensis var. sinensis HOM05D002281 ORTHO05D005599 0.0e+00 2185.2 1286 84.1
CiPaw.07G076600 Carya illinoinensis HOM05D002281 ORTHO05D005599 0.0e+00 2181.8 1284 84.4
Aa31LG11G11220 Aethionema arabicum HOM05D002281 ORTHO05D005599 0.0e+00 2180.2 1286 87.6
TWI60G0078 Tripterygium wilfordii HOM05D002281 ORTHO05D005599 0.0e+00 2180.2 1284 84.0
Eucgr.B02169 Eucalyptus grandis HOM05D002281 ORTHO05D005599 0.0e+00 2179.8 1290 84.6
Prupe.6G354800 Prunus persica HOM05D002281 ORTHO05D005599 0.0e+00 2176.4 1283 84.1
Glyma.19G250600 Glycine max HOM05D002281 ORTHO05D005599 0.0e+00 2171.7 1283 83.9
Phvul.006G107600 Phaseolus vulgaris HOM05D002281 ORTHO05D005599 0.0e+00 2171.7 1282 84.0
FvH4_6g01330 Fragaria vesca HOM05D002281 ORTHO05D005599 0.0e+00 2171.4 1283 83.9
Glyma.03G253000 Glycine max HOM05D002281 ORTHO05D005599 0.0e+00 2169.8 1283 83.9
PGR142G2635 Punica granatum HOM05D002281 ORTHO05D005599 0.0e+00 2168.7 1285 84.3
Lj1g0020458 Lotus japonicus HOM05D002281 ORTHO05D005599 0.0e+00 2161.3 1282 83.3
Potri.013G051200 Populus trichocarpa HOM05D002281 ORTHO05D005599 0.0e+00 2159.4 1285 83.7
TAR362G0445 Trochodendron aralioides HOM05D002281 ORTHO05D005599 0.0e+00 2159.0 1285 83.6
arahy.Tifrunner.gnm1.ann1.KCE1UK Arachis hypogaea HOM05D002281 ORTHO05D005599 0.0e+00 2158.3 1320 82.1
FAN14G5004 Fragaria x ananassa HOM05D002281 ORTHO05D005599 0.0e+00 2157.5 1286 83.6
FAN09G1447 Fragaria x ananassa HOM05D002281 ORTHO05D005599 0.0e+00 2156.7 1283 83.4
FAN05G1240 Fragaria x ananassa HOM05D002281 ORTHO05D005599 0.0e+00 2153.3 1296 82.8
Medtr7g116590 Medicago truncatula HOM05D002281 ORTHO05D005599 0.0e+00 2151.7 1288 83.5
VMungo0540G0745 Vigna mungo HOM05D002281 ORTHO05D005599 0.0e+00 2149.8 1282 83.2
Hma1.2p1_0153F.1_g067890 Hydrangea macrophylla HOM05D002281 ORTHO05D005599 0.0e+00 2145.9 1290 82.9
Sabra19G0037800 Salix brachista HOM05D002281 ORTHO05D005599 0.0e+00 2136.7 1301 82.2
Sabra19G0034800 Salix brachista HOM05D002281 ORTHO05D005599 0.0e+00 2132.5 1301 81.9
Ciclev10023801m.g Citrus clementina HOM05D002281 ORTHO05D005599 0.0e+00 2131.3 1292 83.2
Aqoxy5G01434 Aquilegia oxysepala HOM05D002281 ORTHO05D005599 0.0e+00 2119.4 1285 82.0
ECA233G3880 Erigeron canadensis HOM05D002281 ORTHO05D005599 0.0e+00 2112.4 1283 81.5
COL.COLO4_38179 Corchorus olitorius HOM05D002281 ORTHO05D005599 0.0e+00 2111.6 1285 82.3
Sed0017844 Sechium edule HOM05D002281 ORTHO05D005599 0.0e+00 2111.6 1298 81.0
Solyc11g013280.1 Solanum lycopersicum HOM05D002281 ORTHO05D005599 0.0e+00 2111.6 1286 81.6
HanXRQChr04g0111671 Helianthus annuus HOM05D002281 ORTHO05D005599 0.0e+00 2106.6 1298 81.0
Sc09g0001770 Simmondsia chinensis HOM05D002281 ORTHO05D005599 0.0e+00 2105.5 1285 81.6
arahy.Tifrunner.gnm1.ann1.T4Q4MP Arachis hypogaea HOM05D002281 ORTHO05D005599 0.0e+00 2102.0 1288 82.1
Nn1g03089 Nelumbo nucifera HOM05D002281 ORTHO05D005599 0.0e+00 2100.5 1284 81.0
Sopen11g008300 Solanum pennellii HOM05D002281 ORTHO05D005599 0.0e+00 2094.3 1286 81.3
Ca_09474_v3 Cicer arietinum L. HOM05D002281 ORTHO05D005599 0.0e+00 2093.2 1307 80.9
SalBow7G0462 Salvia bowleyana HOM05D002281 ORTHO05D005599 0.0e+00 2088.9 1285 80.2
Migut.C01166 Erythranthe guttata HOM05D002281 ORTHO05D005599 0.0e+00 2085.8 1285 79.9
MSTRG.1472 Avicennia marina HOM05D002281 ORTHO05D005599 0.0e+00 2085.1 1286 79.8
Lsat_1_v5_gn_8_2941 Lactuca sativa HOM05D002281 ORTHO05D005599 0.0e+00 2084.7 1285 80.9
PSO674G0074 Papaver somniferum HOM05D002281 ORTHO05D005599 0.0e+00 2083.1 1284 80.5
PSO170G6144 Papaver somniferum HOM05D002281 ORTHO05D005599 0.0e+00 2070.0 1284 80.1
SalBow7G2659 Salvia bowleyana HOM05D002281 ORTHO05D005599 0.0e+00 2067.0 1285 79.8
EL10Ac4g09788 Beta vulgaris HOM05D002281 ORTHO05D005599 0.0e+00 2052.7 1284 79.6
FAN05G1274 Fragaria x ananassa HOM05D002281 ORTHO05D005599 0.0e+00 2047.7 1285 80.1
Nitab4.5_0000494g0100 Nicotiana tabacum HOM05D002281 ORTHO05D005599 0.0e+00 2046.2 1286 79.9
Haze_04485 Corylus avellana HOM05D002281 ORTHO05D005599 0.0e+00 2044.6 1305 79.7
SGA_v2.0_scaffold52G18996 Striga asiatica HOM05D002281 ORTHO05D005599 0.0e+00 1978.8 1214 80.2
Nitab4.5_0000051g0330 Nicotiana tabacum HOM05D002281 ORTHO05D005599 0.0e+00 1963.0 1413 72.3
Sabra13G0046600 Salix brachista HOM05D002281 ORTHO05D005599 0.0e+00 1932.1 1549 67.0
Os03g0143800 Oryza sativa ssp. japonica HOM05D002281 ORTHO05D005599 0.0e+00 1927.9 1291 74.1
Hund07164 Selenicereus undatus HOM05D002281 ORTHO05D005599 0.0e+00 1926.0 1219 78.7
Cc10_g10590 Coffea canephora HOM05D002281 ORTHO05D005599 0.0e+00 1895.6 1174 80.3
Zm00001eb003550 Zea mays HOM05D002281 ORTHO05D005599 0.0e+00 1892.9 1288 72.5
AUR62000642 Chenopodium quinoa HOM05D002281 ORTHO05D005599 0.0e+00 1743.8 1312 69.7
Cpa.g.sc51.37 Carica papaya HOM05D002281 ORTHO05D005599 0.0e+00 1647.1 960 86.0
Psat0s3583g0040 Pisum sativum HOM05D002281 ORTHO05D005599 0.0e+00 1646.7 951 86.4
RcHm_v2.0_Chr3g0448901 Rosa chinensis HOM05D002281 ORTHO05D005599 0.0e+00 1582.0 937 82.3
Rhsim05G0168900 Rhododendron simsii HOM05D002281 ORTHO05D005599 0.0e+00 1561.2 1069 75.3
HPP92_013019 Vanilla planifolia HOM05D002281 ORTHO05D005599 0.0e+00 1514.2 1205 64.2
AagrBONN_evm.TU.Sc2ySwM_344.4016 Anthoceros agrestis HOM05D002281 ORTHO05D005599 0.0e+00 1512.7 1289 59.0
Pp3c21_8020 Physcomitrium patens HOM05D002281 ORTHO05D005599 0.0e+00 1511.9 1329 57.6
Mapoly0078s0045 Marchantia polymorpha HOM05D002281 ORTHO05D005599 0.0e+00 1500.3 1290 59.0
MELO3C015463.2 Cucumis melo HOM05D002281 ORTHO05D005599 0.0e+00 1496.9 939 78.3
Lalb_Chr18g0044201 Lupinus albus HOM05D002281 ORTHO05D005599 0.0e+00 1495.3 909 80.4
Actinidia03823 Actinidia chinensis HOM05D002281 ORTHO05D005599 0.0e+00 1493.4 907 80.4
SMO348G0052 Selaginella moellendorffii HOM05D002281 ORTHO05D005599 0.0e+00 1466.1 1291 57.9
unitig_736.g22260 Utricularia gibba HOM05D002281 ORTHO05D005599 0.0e+00 1454.1 1181 64.9
CsaV3_1G040360 Cucumis sativus L. HOM05D002281 ORTHO05D005599 0.0e+00 1444.5 913 77.9
ClCG03G011410 Citrullus lanatus HOM05D002281 ORTHO05D005599 0.0e+00 1443.7 912 77.5
MD12G1252900 Malus domestica HOM05D002281 ORTHO05D005599 0.0e+00 1411.7 847 81.9
Peaxi162Scf00285g00226 Petunia axillaris HOM05D002281 ORTHO05D005599 0.0e+00 1386.7 909 75.2
DCAR_005524 Daucus carota HOM05D002281 ORTHO05D005599 0.0e+00 1334.3 952 70.8
Pp3c2_6040 Physcomitrium patens HOM05D002281 ORTHO05D005599 0.0e+00 1327.0 1308 52.4
ATR0787G096 Amborella trichopoda HOM05D002281 ORTHO05D005599 0.0e+00 1289.6 919 68.9
Hma1.2p1_0153F.1_g067920 Hydrangea macrophylla HOM05D002281 ORTHO05D005599 0.0e+00 1124.0 687 81.7
Ah.06g188740 Amaranthus hybridus HOM05D002281 ORTHO05D005599 9.4e-248 861.3 824 56.2
CAN.G61.7 Capsicum annuum HOM05D002281 ORTHO05D005599 1.7e-244 850.5 803 57.5
Lj2A49T37 Lonicera japonica HOM05D002281 ORTHO05D005599 6.8e-238 828.6 476 88.0
AUR62006997 Chenopodium quinoa HOM05D002281 ORTHO05D005599 2.2e-212 743.8 499 78.0
MD12G1252700 Malus domestica HOM05D002281 ORTHO05D005599 8.4e-204 715.3 451 81.8
SHI14430 Sapria himalayana HOM05D002281 ORTHO05D005599 7.3e-200 702.2 549 66.5
Actinidia03824 Actinidia chinensis HOM05D002281 ORTHO05D005599 2.1e-175 620.9 347 91.6
SEGI_41506 Sequoiadendron giganteum HOM05D002281 ORTHO05D005599 1.7e-172 611.3 420 71.9
RcHm_v2.0_Chr3g0448911 Rosa chinensis HOM05D002281 ORTHO05D005599 1.6e-170 604.7 347 89.3
CAN.G61.6 Capsicum annuum HOM05D002281 ORTHO05D005599 1.9e-168 597.8 347 89.0
Lalb_Chr18g0044191 Lupinus albus HOM05D002281 ORTHO05D005599 1.9e-168 597.8 347 88.5
ATR0787G220 Amborella trichopoda HOM05D002281 ORTHO05D005599 7.7e-165 585.9 347 86.5
CDE01G0796 Ceratophyllum demersum HOM05D002281 ORTHO05D005599 8.5e-164 582.4 451 65.2
ClCG03G011400 Citrullus lanatus HOM05D002281 ORTHO05D005599 5.3e-158 563.1 347 84.1
CsaV3_1G040370 Cucumis sativus L. HOM05D002281 ORTHO05D005599 6.1e-154 549.7 347 82.7
CBR_g23328 Chara braunii HOM05D002281 ORTHO05D005599 7.9e-154 549.3 635 45.7
CDE01G0576 Ceratophyllum demersum HOM05D002281 ORTHO05D005599 5.7e-152 543.1 381 70.6
Psat0s2603g0080 Pisum sativum HOM05D002281 ORTHO05D005599 3.3e-144 517.3 333 75.7
vmacro19963 Vaccinium macrocarpon HOM05D002281 ORTHO05D005599 1.3e-140 505.4 393 70.5
Cpa.g.sc51.41 Carica papaya HOM05D002281 ORTHO05D005599 9.4e-139 499.2 299 79.3
Peaxi162Scf00285g00225 Petunia axillaris HOM05D002281 ORTHO05D005599 1.8e-137 495.0 274 91.6
DCAR_005525 Daucus carota HOM05D002281 ORTHO05D005599 5.7e-128 463.4 259 90.3
HPP92_013016 Vanilla planifolia HOM05D002281 ORTHO05D005599 8.0e-122 443.0 302 70.5
Haze_04492 Corylus avellana HOM05D002281 ORTHO05D005599 6.6e-116 423.3 274 81.8
CAN.G61.8 Capsicum annuum HOM05D002281 ORTHO05D005599 2.5e-115 421.4 408 56.1
Lj2A49G34 Lonicera japonica HOM05D002281 ORTHO05D005599 2.9e-111 407.9 243 82.3
HPP92_013015 Vanilla planifolia HOM05D002281 ORTHO05D005599 4.1e-110 404.1 347 62.8
arahy.Tifrunner.gnm1.ann1.I7KFZB Arachis hypogaea HOM05D002281 ORTHO05D005599 1.6e-101 375.6 264 76.5
FAN14G3852 Fragaria x ananassa HOM05D002281 ORTHO05D006774 2.8e-98 364.8 260 74.6
SEGI_00068 Sequoiadendron giganteum HOM05D002281 ORTHO05D005599 1.2e-85 322.8 264 60.6
vmacro19965 Vaccinium macrocarpon HOM05D002281 ORTHO05D005599 3.8e-71 274.6 166 78.9
CBR_g23326 Chara braunii HOM05D002281 ORTHO05D005599 5.4e-70 270.8 464 34.9
Hma1.2p1_0153F.1_g067900 Hydrangea macrophylla HOM05D002281 ORTHO05D005599 1.2e-69 269.6 154 89.0
Ah.06g188770 Amaranthus hybridus HOM05D002281 ORTHO05D005599 9.3e-62 243.4 134 91.0
vmacro19966 Vaccinium macrocarpon HOM05D002281 ORTHO05D005599 5.8e-56 224.2 425 36.2
Cc10_g10600 Coffea canephora HOM05D002281 ORTHO05D005599 1.9e-54 219.2 130 86.9
SHI14432 Sapria himalayana HOM05D002281 ORTHO05D005599 2.7e-53 215.3 142 72.5
Lj2A50T26 Lonicera japonica HOM05D002281 ORTHO05D005599 3.9e-52 211.5 131 78.6
Lj2A49T38 Lonicera japonica HOM05D002281 ORTHO05D005599 1.5e-48 199.5 119 78.2
Lj2A49G35 Lonicera japonica HOM05D002281 ORTHO05D005599 6.5e-47 194.1 127 73.2
BraA03t10210Z Brassica rapa HOM05D002281 ORTHO05D005599 7.4e-43 180.6 123 78.9
CDE02G3044 Ceratophyllum demersum HOM05D002281 ORTHO05D005599 5.9e-40 171.0 127 66.1
CBR_g74560 Chara braunii HOM05D002281 ORTHO05D005599 1.0e-39 170.2 164 57.9
A03p08860 Brassica napus HOM05D002281 ORTHO05D005599 1.0e-36 160.2 123 70.7
Gorai.007G272700 Gossypium raimondii HOM05D002281 ORTHO05D005599 1.8e-36 159.5 98 77.6
Gohir.D11G253675 Gossypium hirsutum HOM05D002281 ORTHO05D005599 1.1e-35 156.8 98 76.5
SEGI_02952 Sequoiadendron giganteum HOM05D002281 ORTHO05D005599 2.0e-35 156.0 113 67.3
FAN14G5351 Fragaria x ananassa HOM05D002281 ORTHO05D006774 3.1e-33 148.7 128 64.1
SEGI_33538 Sequoiadendron giganteum HOM05D002281 ORTHO05D005599 3.0e-28 132.1 95 64.2
Gohir.D11G253550 Gossypium hirsutum HOM05D002281 ORTHO05D005599 1.3e-26 126.7 73 78.1
Gorai.007G272500 Gossypium raimondii HOM05D002281 ORTHO05D005599 1.3e-26 126.7 73 76.7
SEGI_28731 Sequoiadendron giganteum HOM05D002281 ORTHO05D005599 8.2e-26 124.0 85 68.2
Gohir.A11G244201 Gossypium hirsutum HOM05D002281 ORTHO05D005599 1.7e-23 116.3 72 70.8
SHI14427 Sapria himalayana HOM05D000030 ORTHO05D000009 8.5e-23 114.0 112 56.2
Nn6g32299 Nelumbo nucifera HOM05D002281 ORTHO05D005599 1.2e-21 110.2 73 71.2
arahy.Tifrunner.gnm1.ann1.57298L Arachis hypogaea HOM05D002281 ORTHO05D005599 1.0e-15 90.5 104 51.0
HPP92_013017 Vanilla planifolia HOM05D002281 ORTHO05D005599 6.1e-13 81.3 54 72.2
QL06p040095 Quercus lobata HOM05D002281 ORTHO05D005599 1.4e-09 70.1 77 51.9
Ah.06g188760 Amaranthus hybridus HOM05D002281 ORTHO05D006774 2.0e-08 66.2 142 34.5
vmacro19964 Vaccinium macrocarpon HOM05D002281 ORTHO05D005599 2.7e-08 65.9 34 82.4


User provided reference genes

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