Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT5G18310 Arabidopsis thaliana HOM05D002211 ORTHO05D002206 1.9e-64 249.2 141 100.0
AL6G29540 Arabidopsis lyrata HOM05D002211 ORTHO05D002206 1.4e-51 206.5 141 90.8
Thhalv10014852m.g Eutrema salsugineum HOM05D002211 ORTHO05D002206 1.5e-50 203.0 142 85.2
CARHR194750 Cardamine hirsuta HOM05D002211 ORTHO05D002206 1.3e-49 199.9 141 72.3
Sp6g26000 Schrenkiella parvula HOM05D002211 ORTHO05D002206 2.1e-47 192.6 141 82.3
BcaB08g36688 Brassica carinata HOM05D002211 ORTHO05D002206 3.9e-46 188.3 140 82.1
A10p21210 Brassica napus HOM05D002211 ORTHO05D002206 8.7e-46 187.2 140 82.1
C09p58640 Brassica napus HOM05D002211 ORTHO05D002206 8.7e-46 187.2 140 82.1
BolC9t58706H Brassica oleracea HOM05D002211 ORTHO05D002206 8.7e-46 187.2 140 82.1
A02p04820 Brassica napus HOM05D002211 ORTHO05D002206 1.9e-45 186.0 149 75.2
BraA10t44184Z Brassica rapa HOM05D002211 ORTHO05D002206 2.1e-44 182.6 141 81.6
C02p09800 Brassica napus HOM05D002211 ORTHO05D002206 3.7e-44 181.8 139 78.4
BolC2t06888H Brassica oleracea HOM05D002211 ORTHO05D002206 3.7e-44 181.8 139 78.4
BraA02t05441Z Brassica rapa HOM05D002211 ORTHO05D002206 1.1e-43 180.3 139 79.1
Carub.0006s1659 Capsella rubella HOM05D002211 ORTHO05D002206 4.0e-43 178.3 142 69.0
Aa31LG11G11290 Aethionema arabicum HOM05D002211 ORTHO05D002206 4.3e-37 158.3 145 71.7
THA.LOC104820745 Tarenaya hassleriana HOM05D002211 ORTHO05D002206 3.1e-27 125.6 152 55.3
THA.LOC104827277 Tarenaya hassleriana HOM05D002211 ORTHO05D002206 3.2e-24 115.5 141 46.8
COL.COLO4_20545 Corchorus olitorius HOM05D002211 ORTHO05D002206 1.1e-16 90.5 162 41.4
Cpa.g.sc51.66 Carica papaya HOM05D002211 ORTHO05D002206 3.0e-14 82.4 151 38.4
Gohir.A11G241500 Gossypium hirsutum HOM05D002211 ORTHO05D002206 5.2e-14 81.6 170 35.9
Duzib106G0223 Durio zibethinus HOM05D002211 ORTHO05D002206 6.7e-14 81.3 164 36.6
Thecc.05G260900 Theobroma cacao HOM05D002211 ORTHO05D002206 6.7e-14 81.3 160 37.5
Gohir.D11G250800 Gossypium hirsutum HOM05D002211 ORTHO05D002206 1.5e-13 80.1 164 36.6
A04p06090 Brassica napus HOM05D002211 ORTHO05D002206 6.3e-12 74.7 64 60.9
Duzib177G1183 Durio zibethinus HOM05D002211 ORTHO05D002206 6.3e-12 74.7 165 35.2
Potri.013G052600 Populus trichocarpa HOM05D002211 ORTHO05D002206 1.1e-11 73.9 143 34.3
Manes.09G144900 Manihot esculenta HOM05D002211 ORTHO05D002206 1.4e-11 73.6 165 36.4
Potri.019G029600 Populus trichocarpa HOM05D002211 ORTHO05D002206 1.8e-11 73.2 153 35.3
TWI60G0660 Tripterygium wilfordii HOM05D002211 ORTHO05D002206 4.1e-11 72.0 146 33.6
TWI32G0781 Tripterygium wilfordii HOM05D002211 ORTHO05D002206 5.3e-11 71.6 157 36.3
CANSAT54G2545 Cannabis sativa HOM05D002211 ORTHO05D002206 9.1e-11 70.9 164 36.0
Duzib128G1915 Durio zibethinus HOM05D002211 ORTHO05D002206 1.2e-10 70.5 157 36.9
FvH4_6g01210 Fragaria vesca HOM05D002211 ORTHO05D002206 1.6e-10 70.1 159 33.3
Ciclev10022368m.g Citrus clementina HOM05D002211 ORTHO05D002206 2.6e-10 69.3 164 32.3
Psat0s3509g0040 Pisum sativum HOM05D002211 ORTHO05D002206 2.6e-10 69.3 153 34.6
Prupe.6G355600 Prunus persica HOM05D002211 ORTHO05D002206 2.6e-10 69.3 169 34.9
FAN05G1779 Fragaria x ananassa HOM05D002211 ORTHO05D002206 3.5e-10 68.9 159 33.3
FAN05G2499 Fragaria x ananassa HOM05D002211 ORTHO05D002206 3.5e-10 68.9 159 33.3
Manes.08G147100 Manihot esculenta HOM05D002211 ORTHO05D002206 5.9e-10 68.2 137 38.0
RcHm_v2.0_Chr3g0448791 Rosa chinensis HOM05D002211 ORTHO05D002206 7.7e-10 67.8 154 35.1
PGR142G0339 Punica granatum HOM05D002211 ORTHO05D002206 1.0e-09 67.4 154 33.8
GSVIVG01026373001 Vitis vinifera HOM05D002211 ORTHO05D002206 1.3e-09 67.0 147 36.1
Medtr7g116610 Medicago truncatula HOM05D002211 ORTHO05D002206 1.7e-09 66.6 148 36.5
Ca_09451_v3 Cicer arietinum L. HOM05D002211 ORTHO05D002206 2.9e-09 65.9 156 31.4
Lalb_Chr02g0149321 Lupinus albus HOM05D002211 ORTHO05D002206 3.8e-09 65.5 154 44.2
MD04G1235700 Malus domestica HOM05D002211 ORTHO05D002206 3.8e-09 65.5 168 32.1
TPR.G4687 Trifolium pratense HOM05D002211 ORTHO05D002206 5.0e-09 65.1 146 31.5
VMungo0540G2450 Vigna mungo HOM05D002211 ORTHO05D002206 6.5e-09 64.7 161 32.9
CiPaw.07G075600 Carya illinoinensis HOM05D002211 ORTHO05D002206 8.5e-09 64.3 138 34.8
Lj3g0001912 Lotus japonicus HOM05D002211 ORTHO05D002206 1.1e-08 63.9 140 34.3
ClCG11G010190 Citrullus lanatus HOM05D002211 ORTHO05D002206 1.5e-08 63.5 145 31.7
MELO3C008671.2 Cucumis melo HOM05D002211 ORTHO05D002206 1.5e-08 63.5 153 34.6
Gohir.A13G102400 Gossypium hirsutum HOM05D002211 ORTHO05D002206 1.5e-08 63.5 170 34.1
FAN02G1834 Fragaria x ananassa HOM05D002211 ORTHO05D002206 1.9e-08 63.2 185 30.8
CsaV3_2G010180 Cucumis sativus L. HOM05D002211 ORTHO05D002206 2.5e-08 62.8 156 35.3
Sed0010531 Sechium edule HOM05D002211 ORTHO05D002206 3.2e-08 62.4 140 36.4
Sabra13G0047200 Salix brachista HOM05D002211 ORTHO05D002206 4.2e-08 62.0 137 34.3
Duzib138G0235 Durio zibethinus HOM05D002211 ORTHO05D002206 5.5e-08 61.6 140 35.0
MD12G1253400 Malus domestica HOM05D002211 ORTHO05D002206 7.2e-08 61.2 170 32.9
Aqoxy5G00107 Aquilegia oxysepala HOM05D002211 ORTHO05D002206 9.4e-08 60.8 149 34.2
Psat0s3038g0080 Pisum sativum HOM05D002211 ORTHO05D002206 1.2e-07 60.5 146 32.9
Sabra19G0036300 Salix brachista HOM05D002211 ORTHO05D002206 1.2e-07 60.5 143 30.1
Sabra19G0039400 Salix brachista HOM05D002211 ORTHO05D002206 1.2e-07 60.5 143 30.1
FvH4_6g01200 Fragaria vesca HOM05D001040 ORTHO05D002795 2.1e-07 59.7 145 31.0
Gorai.007G268900 Gossypium raimondii HOM05D002211 ORTHO05D002206 2.1e-07 59.7 155 33.5
Nitab4.5_0004201g0020 Nicotiana tabacum HOM05D002211 ORTHO05D002206 2.1e-07 59.7 145 36.6
Phvul.006G108100 Phaseolus vulgaris HOM05D002211 ORTHO05D002206 2.7e-07 59.3 160 31.2
Aqoxy5G00111 Aquilegia oxysepala HOM05D002211 ORTHO05D002206 3.6e-07 58.9 151 30.5
Gohir.A11G142300 Gossypium hirsutum HOM05D002211 ORTHO05D002206 3.6e-07 58.9 140 30.7
Eucgr.B02173 Eucalyptus grandis HOM05D002211 ORTHO05D002206 4.7e-07 58.5 165 29.7
Phvul.010G031300 Phaseolus vulgaris HOM05D002211 ORTHO05D002206 4.7e-07 58.5 141 30.5
Glyma.19G250900 Glycine max HOM05D002211 ORTHO05D002206 6.1e-07 58.2 158 30.4
Potri.002G250800 Populus trichocarpa HOM05D002211 ORTHO05D002206 6.1e-07 58.2 144 30.6
EL10Ac4g09798 Beta vulgaris HOM05D002211 ORTHO05D002206 8.0e-07 57.8 158 32.9
FAN05G1484 Fragaria x ananassa HOM05D002211 ORTHO05D002206 1.0e-06 57.4 144 31.9
Gohir.D11G148600 Gossypium hirsutum HOM05D002211 ORTHO05D002206 1.0e-06 57.4 140 30.7
Gorai.007G159300 Gossypium raimondii HOM05D002211 ORTHO05D002206 1.0e-06 57.4 140 30.7
VMungo0331G1849 Vigna mungo HOM05D002211 ORTHO05D002206 1.4e-06 57.0 141 31.2
Glyma.03G089800 Glycine max HOM05D002211 ORTHO05D002206 1.8e-06 56.6 141 30.5
Glyma.13G008000 Glycine max HOM05D002211 ORTHO05D002206 1.8e-06 56.6 141 30.5
TAR362G0774 Trochodendron aralioides HOM05D002211 ORTHO05D002206 1.8e-06 56.6 142 34.5
MSTRG.8176 Avicennia marina HOM05D002211 ORTHO05D002206 2.3e-06 56.2 155 33.5
Lj1g0002409 Lotus japonicus HOM05D002211 ORTHO05D002206 2.3e-06 56.2 130 30.8
Glyma.03G253400 Glycine max HOM05D002211 ORTHO05D002206 3.0e-06 55.8 137 32.1
Psat3g005600 Pisum sativum HOM05D002211 ORTHO05D002206 3.0e-06 55.8 137 31.4
Atru.chr2.1234 Acer truncatum HOM05D002211 ORTHO05D002206 4.0e-06 55.5 170 31.2
arahy.Tifrunner.gnm1.ann1.ML5U0X Arachis hypogaea HOM05D002211 ORTHO05D002206 4.0e-06 55.5 151 29.8
Hund09466 Selenicereus undatus HOM05D002211 ORTHO05D002206 4.0e-06 55.5 140 30.7
Thecc.01G211400 Theobroma cacao HOM05D002211 ORTHO05D002206 4.0e-06 55.5 143 32.9
Oeu001241.1 Olea europaea HOM05D002211 ORTHO05D002206 5.2e-06 55.1 146 31.5


User provided reference genes

Program Settings