Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT5G18130 Arabidopsis thaliana HOM05D003715 ORTHO05D003958 1.4e-159 566.2 281 100.0
AL6G29330 Arabidopsis lyrata HOM05D003715 ORTHO05D003958 8.6e-146 520.4 282 91.1
Carub.0006s1642 Capsella rubella HOM05D003715 ORTHO05D003958 2.9e-125 452.2 282 82.3
Thhalv10014292m.g Eutrema salsugineum HOM05D003715 ORTHO05D003958 2.7e-123 445.7 288 78.8
Sp6g26180 Schrenkiella parvula HOM05D003715 ORTHO05D003958 7.6e-118 427.6 287 78.7
CARHR194940 Cardamine hirsuta HOM05D003715 ORTHO05D003958 7.4e-105 384.4 302 71.5
A10p21370 Brassica napus HOM05D003715 ORTHO05D003958 1.2e-102 377.1 287 70.7
C02p09710 Brassica napus HOM05D003715 ORTHO05D003958 1.2e-102 377.1 283 71.0
BolC2t06880H Brassica oleracea HOM05D003715 ORTHO05D003958 1.5e-102 376.7 283 71.0
A02p04750 Brassica napus HOM05D003715 ORTHO05D003958 1.7e-101 373.2 284 70.1
BcaB05g23302 Brassica carinata HOM05D003715 ORTHO05D003958 6.5e-101 371.3 287 71.1
BcaC03g13579 Brassica carinata HOM05D003715 ORTHO05D003958 1.1e-100 370.5 283 69.6
C09p58840 Brassica napus HOM05D003715 ORTHO05D003958 1.9e-100 369.8 288 69.4
BraA02t05434Z Brassica rapa HOM05D003715 ORTHO05D003958 3.9e-98 362.1 284 70.4
A03p08670 Brassica napus HOM05D003715 ORTHO05D003958 2.6e-97 359.4 290 70.7
BolC9t58728H Brassica oleracea HOM05D003715 ORTHO05D003958 1.3e-96 357.1 283 68.9
BraA10t44200Z Brassica rapa HOM05D003715 ORTHO05D003958 6.3e-96 354.8 274 70.1
BcaB01g06399 Brassica carinata HOM05D003715 ORTHO05D003958 2.4e-95 352.8 287 67.6
BolC3t13497H Brassica oleracea HOM05D003715 ORTHO05D003958 4.1e-95 352.1 288 68.1
BcaB01g05177 Brassica carinata HOM05D003715 ORTHO05D003958 5.3e-95 351.7 288 68.1
C03p10110 Brassica napus HOM05D003715 ORTHO05D003958 5.3e-95 351.7 288 68.1
BraA03t10190Z Brassica rapa HOM05D003715 ORTHO05D003958 5.3e-95 351.7 288 68.1
BcaB08g36703 Brassica carinata HOM05D003715 ORTHO05D003958 1.4e-74 283.9 287 59.2
Carub.0003s0306 Capsella rubella HOM05D003715 ORTHO05D003958 5.9e-70 268.5 287 55.4
AL3G13760 Arabidopsis lyrata HOM05D003715 ORTHO05D003958 1.7e-69 266.9 292 57.2
AT3G03870 Arabidopsis thaliana HOM05D003715 ORTHO05D003958 3.8e-69 265.8 296 56.1
Sp3g02840 Schrenkiella parvula HOM05D003715 ORTHO05D003958 3.2e-68 262.7 293 55.3
BcaNung05741 Brassica carinata HOM05D003715 ORTHO05D003958 1.5e-65 253.8 284 54.2
Thhalv10021350m.g Eutrema salsugineum HOM05D003715 ORTHO05D003958 3.4e-65 252.7 284 52.8
A05p43520 Brassica napus HOM05D003715 ORTHO05D003958 2.2e-64 250.0 289 55.4
CARHR077990 Cardamine hirsuta HOM05D003715 ORTHO05D003958 1.4e-63 247.3 294 52.7
THA.LOC104820776 Tarenaya hassleriana HOM05D003715 ORTHO05D003958 1.6e-62 243.8 314 51.3
BcaC05g29901 Brassica carinata HOM05D003715 ORTHO05D003958 4.5e-62 242.3 286 53.1
BolC5t34973H Brassica oleracea HOM05D003715 ORTHO05D003958 4.5e-62 242.3 286 53.1
BraA05t23092Z Brassica rapa HOM05D003715 ORTHO05D003958 7.8e-62 241.5 285 54.7
Aa31LG11G11470 Aethionema arabicum HOM05D003715 ORTHO05D003958 1.7e-61 240.4 289 53.3
BcaC05g30247 Brassica carinata HOM05D003715 ORTHO05D003958 1.1e-60 237.7 286 52.4
BolC1t05801H Brassica oleracea HOM05D003715 ORTHO05D003958 1.4e-58 230.7 287 51.9
Aa31LG5G14450 Aethionema arabicum HOM05D003715 ORTHO05D003958 1.0e-53 214.5 290 49.7
BcaC05g30288 Brassica carinata HOM05D003715 ORTHO05D003958 2.3e-45 186.8 219 51.6
THA.LOC104827275 Tarenaya hassleriana HOM05D003715 ORTHO05D003958 3.1e-42 176.4 274 46.4
Manes.09G140500 Manihot esculenta HOM05D003715 ORTHO05D003958 5.2e-42 175.6 296 38.9
THA.LOC104802870 Tarenaya hassleriana HOM05D003715 ORTHO05D003958 5.8e-41 172.2 294 44.6
Manes.08G145000 Manihot esculenta HOM05D003715 ORTHO05D003958 2.4e-39 166.8 297 37.4
Cfa001533 Carpinus fangiana HOM05D003715 ORTHO05D003958 6.6e-37 158.7 305 40.7
Potri.019G035600 Populus trichocarpa HOM05D003715 ORTHO05D003958 8.6e-37 158.3 313 38.3
Sabra19G0044200 Salix brachista HOM05D003715 ORTHO05D003958 8.6e-37 158.3 312 38.1
Sabra19G0047500 Salix brachista HOM05D003715 ORTHO05D003958 8.6e-37 158.3 312 38.1
QL07p018445 Quercus lobata HOM05D003715 ORTHO05D003958 5.6e-36 155.6 309 39.2
PGSC0003DMG400008354 Solanum tuberosum HOM05D003715 ORTHO05D003958 1.8e-34 150.6 293 37.2
Haze_19430 Corylus avellana HOM05D003715 ORTHO05D003958 3.1e-34 149.8 316 38.3
Solyc10g078590.2 Solanum lycopersicum HOM05D003715 ORTHO05D003958 3.1e-34 149.8 293 38.9
Sopen10g029220 Solanum pennellii HOM05D003715 ORTHO05D003958 1.2e-33 147.9 293 38.6
Potri.013G057200 Populus trichocarpa HOM05D003715 ORTHO05D003958 1.5e-33 147.5 320 37.2
Nitab4.5_0002769g0040 Nicotiana tabacum HOM05D003715 ORTHO05D003958 2.0e-33 147.1 291 38.1
Sabra13G0051000 Salix brachista HOM05D003715 ORTHO05D003958 2.6e-33 146.7 319 37.9
Hma1.2p1_0152F.1_g067600 Hydrangea macrophylla HOM05D003715 ORTHO05D003958 2.2e-32 143.7 305 37.0
Eucgr.A02102 Eucalyptus grandis HOM05D003715 ORTHO05D003958 6.4e-32 142.1 309 35.0
TAR623G0055 Trochodendron aralioides HOM05D003715 ORTHO05D003958 1.9e-31 140.6 306 36.9
Ciclev10021362m.g Citrus clementina HOM05D003715 ORTHO05D003958 5.4e-31 139.0 306 36.3
Dinv37021 Davidia involucrata HOM05D003715 ORTHO05D003958 7.1e-31 138.7 297 36.7
MSTRG.26069 Avicennia marina HOM05D003715 ORTHO05D003958 4.6e-30 136.0 292 34.6
VMungo0464G1653 Vigna mungo HOM05D003715 ORTHO05D003958 4.6e-30 136.0 299 36.5
Sc13g0002630 Simmondsia chinensis HOM05D003715 ORTHO05D003958 1.0e-29 134.8 305 35.7
Dinv14575 Davidia involucrata HOM05D003715 ORTHO05D003958 2.3e-29 133.7 300 35.3
TWI32G0411 Tripterygium wilfordii HOM05D003715 ORTHO05D003958 2.3e-29 133.7 320 36.6
ClCG04G005350 Citrullus lanatus HOM05D003715 ORTHO05D003958 5.1e-29 132.5 308 37.3
Actinidia22080 Actinidia chinensis HOM05D003715 ORTHO05D003958 8.7e-29 131.7 316 34.8
PGR142G1981 Punica granatum HOM05D003715 ORTHO05D003958 8.7e-29 131.7 298 36.9
Nitab4.5_0000658g0020 Nicotiana tabacum HOM05D003715 ORTHO05D003958 1.1e-28 131.3 315 34.9
BcaC03g13578 Brassica carinata HOM05D003715 ORTHO05D003958 2.5e-28 130.2 104 66.3
CiPaw.10G001300 Carya illinoinensis HOM05D003715 ORTHO05D003958 2.5e-28 130.2 312 34.6
Oeu035703.1 Olea europaea HOM05D003715 ORTHO05D003958 2.5e-28 130.2 300 35.3
Phvul.004G080700 Phaseolus vulgaris HOM05D003715 ORTHO05D003958 2.5e-28 130.2 298 36.9
Nn2g12054 Nelumbo nucifera HOM05D003715 ORTHO05D003958 3.3e-28 129.8 292 34.2
Atru.chr2.1400 Acer truncatum HOM05D003715 ORTHO05D003958 4.3e-28 129.4 313 35.5
CsaV3_4G013240 Cucumis sativus L. HOM05D003715 ORTHO05D003958 5.6e-28 129.0 313 36.1
Oeu024502.1 Olea europaea HOM05D003715 ORTHO05D003958 5.6e-28 129.0 302 34.1
MELO3C008806.2 Cucumis melo HOM05D003715 ORTHO05D003958 7.3e-28 128.6 309 35.6
Nitab4.5_0000358g0150 Nicotiana tabacum HOM05D003715 ORTHO05D003958 9.6e-28 128.3 291 36.8
PGR042G0616 Punica granatum HOM05D003715 ORTHO05D003958 9.6e-28 128.3 295 36.6
Ca_08274_v3 Cicer arietinum L. HOM05D003715 ORTHO05D003958 1.6e-27 127.5 292 35.6
Glyma.16G153700 Glycine max HOM05D003715 ORTHO05D003958 2.8e-27 126.7 295 35.3
DCAR_019875 Daucus carota HOM05D003715 ORTHO05D003958 6.2e-27 125.6 299 31.8
vmacro12564 Vaccinium macrocarpon HOM05D003715 ORTHO05D003958 6.2e-27 125.6 299 37.5
Glyma.02G072500 Glycine max HOM05D003715 ORTHO05D003958 1.1e-26 124.8 299 35.1
TWI34G1349 Tripterygium wilfordii HOM05D003715 ORTHO05D003958 1.4e-26 124.4 314 35.7
MD14G1003600 Malus domestica HOM05D003715 ORTHO05D003958 1.8e-26 124.0 324 34.0
PSO781G0019 Papaver somniferum HOM05D003715 ORTHO05D003958 1.8e-26 124.0 287 30.3
Peaxi162Scf00463g00019 Petunia axillaris HOM05D003715 ORTHO05D003958 3.1e-26 123.2 315 33.0
Prupe.7G006100 Prunus persica HOM05D003715 ORTHO05D003958 3.1e-26 123.2 328 32.9
Hund19231 Selenicereus undatus HOM05D003715 ORTHO05D003958 3.1e-26 123.2 288 36.1
Thecc.05G249800 Theobroma cacao HOM05D003715 ORTHO05D003958 6.9e-26 122.1 308 35.1
Peaxi162Scf00003g04827 Petunia axillaris HOM05D003715 ORTHO05D003958 9.0e-26 121.7 285 35.1
Psat3g088760 Pisum sativum HOM05D003715 ORTHO05D003958 9.0e-26 121.7 285 33.7
Sed0021221 Sechium edule HOM05D003715 ORTHO05D003958 1.2e-25 121.3 288 35.4
MBI01_g25640_MAGBIO Magnolia biondii HOM05D003715 ORTHO05D003958 1.5e-25 120.9 329 34.3
RcHm_v2.0_Chr3g0497011 Rosa chinensis HOM05D003715 ORTHO05D003958 1.5e-25 120.9 325 33.8
COL.COLO4_36085 Corchorus olitorius HOM05D003715 ORTHO05D003958 2.6e-25 120.2 195 43.6
MD12G1005100 Malus domestica HOM05D003715 ORTHO05D003958 2.6e-25 120.2 312 32.4
Medtr7g085790 Medicago truncatula HOM05D003715 ORTHO05D003958 3.4e-25 119.8 290 33.1
PSO339G5928 Papaver somniferum HOM05D003715 ORTHO05D003958 4.4e-25 119.4 297 34.3
Lalb_Chr02g0157161 Lupinus albus HOM05D003715 ORTHO05D003958 5.8e-25 119.0 289 33.6
Actinidia30549 Actinidia chinensis HOM05D003715 ORTHO05D003958 9.9e-25 118.2 257 38.9
Lalb_Chr22g0359081 Lupinus albus HOM05D003715 ORTHO05D003958 9.9e-25 118.2 295 34.2
PSO384G3755 Papaver somniferum HOM05D003715 ORTHO05D003958 9.9e-25 118.2 295 33.9
EL10Ac3g06828 Beta vulgaris HOM05D003715 ORTHO05D003958 1.7e-24 117.5 289 33.6
Lj1g0012553 Lotus japonicus HOM05D003715 ORTHO05D003958 1.7e-24 117.5 298 33.6
MBI04_g28023_MAGBIO Magnolia biondii HOM05D003715 ORTHO05D003958 2.2e-24 117.1 298 35.6
arahy.Tifrunner.gnm1.ann1.V3MY1S Arachis hypogaea HOM05D003715 ORTHO05D003958 2.9e-24 116.7 287 33.8
Gohir.A11G235300 Gossypium hirsutum HOM05D003715 ORTHO05D003958 6.4e-24 115.5 311 34.4
Phvul.001G111500 Phaseolus vulgaris HOM05D003715 ORTHO05D003958 6.4e-24 115.5 302 34.8
FvH4_1g28230 Fragaria vesca HOM05D003715 ORTHO05D003958 1.9e-23 114.0 301 34.2
FAN23G0877 Fragaria x ananassa HOM05D003715 ORTHO05D003958 2.4e-23 113.6 299 33.8
Lj1g0002462 Lotus japonicus HOM05D003715 ORTHO05D003958 2.4e-23 113.6 292 33.2
Ca_04486_v3 Cicer arietinum L. HOM05D003715 ORTHO05D003958 3.2e-23 113.2 171 44.4
Ah.13g075440 Amaranthus hybridus HOM05D006363 ORTHO05D007920 4.2e-23 112.8 238 35.3
Lalb_Chr14g0364551 Lupinus albus HOM05D003715 ORTHO05D003958 5.4e-23 112.5 283 33.2
TPR.G5870 Trifolium pratense HOM05D003715 ORTHO05D003958 7.1e-23 112.1 299 34.4
Gorai.007G262000 Gossypium raimondii HOM05D003715 ORTHO05D003958 9.3e-23 111.7 308 34.1
Sed0002226 Sechium edule HOM05D003715 ORTHO05D003958 1.2e-22 111.3 326 31.6
SGA_v2.0_scaffold94G28404 Striga asiatica HOM05D003715 ORTHO05D003958 1.2e-22 111.3 291 32.0
FAN26G1768 Fragaria x ananassa HOM05D003715 ORTHO05D003958 3.5e-22 109.8 298 33.6
HanXRQChr14g0438161 Helianthus annuus HOM05D003715 ORTHO05D003958 3.5e-22 109.8 296 34.1
TPR.G9142 Trifolium pratense HOM05D003715 ORTHO05D003958 3.5e-22 109.8 288 33.0
Cc06_g23060 Coffea canephora HOM05D003715 ORTHO05D003958 7.8e-22 108.6 168 43.5
Duzib106G1922 Durio zibethinus HOM05D003715 ORTHO05D003958 1.0e-21 108.2 310 32.9
Eucgr.K01502 Eucalyptus grandis HOM05D003715 ORTHO05D003958 1.3e-21 107.8 180 45.6
Aqoxy2G00514 Aquilegia oxysepala HOM05D003715 ORTHO05D003958 3.0e-21 106.7 285 34.4
Medtr6g029250 Medicago truncatula HOM05D003715 ORTHO05D003958 3.0e-21 106.7 169 43.8
MBI04_g47731_MAGBIO Magnolia biondii HOM05D003715 ORTHO05D003958 5.1e-21 105.9 187 40.6
FAN28G3019 Fragaria x ananassa HOM05D003715 ORTHO05D003958 8.7e-21 105.1 301 32.9
Gohir.D11G246200 Gossypium hirsutum HOM05D003715 ORTHO05D003958 8.7e-21 105.1 310 32.9
Lsat_1_v5_gn_6_37461 Lactuca sativa HOM05D003715 ORTHO05D003958 1.5e-20 104.4 283 32.9
Glyma.19G112800 Glycine max HOM05D003715 ORTHO05D003958 2.5e-20 103.6 304 34.2
Nitab4.5_0000394g0140 Nicotiana tabacum HOM05D003715 ORTHO05D003958 2.5e-20 103.6 306 33.0
Psat1g091040 Pisum sativum HOM05D003715 ORTHO05D003958 4.3e-20 102.8 168 41.1
Glyma.16G040300 Glycine max HOM05D003715 ORTHO05D003958 5.6e-20 102.4 306 34.6
ECA233G0839 Erigeron canadensis HOM05D003715 ORTHO05D003958 9.6e-20 101.7 294 33.7
VMungo1383G2890 Vigna mungo HOM05D003715 ORTHO05D003958 1.6e-19 100.9 107 53.3
Cpa.g.sc51.130 Carica papaya HOM05D003715 ORTHO05D003958 2.8e-19 100.1 311 32.2
arahy.Tifrunner.gnm1.ann1.KTU7AY Arachis hypogaea HOM05D003715 ORTHO05D003958 6.2e-19 99.0 179 39.7
ECA238G2879 Erigeron canadensis HOM05D003715 ORTHO05D003958 1.1e-18 98.2 296 31.1
SalBow1G3164 Salvia bowleyana HOM05D003715 ORTHO05D003958 2.4e-18 97.1 280 31.1
CANSAT78G1806 Cannabis sativa HOM05D003715 ORTHO05D003958 3.1e-18 96.7 316 31.0
CSS0027479 Camellia sinensis var. sinensis HOM05D003715 ORTHO05D003958 1.5e-17 94.4 96 54.2
ATR0737G080 Amborella trichopoda HOM05D003715 ORTHO05D003958 3.4e-17 93.2 308 29.9
CiPaw.09G002400 Carya illinoinensis HOM05D003715 ORTHO05D003958 4.5e-17 92.8 265 32.8
HanXRQChr13g0397871 Helianthus annuus HOM05D003715 ORTHO05D003958 5.8e-17 92.4 297 29.6
TAR633G2492 Trochodendron aralioides HOM05D003715 ORTHO05D003958 5.8e-17 92.4 307 28.3
HanXRQChr02g0054571 Helianthus annuus HOM05D003715 ORTHO05D003958 1.3e-16 91.3 293 32.1
MBI04_g37012_MAGBIO Magnolia biondii HOM05D003715 ORTHO05D003958 6.4e-16 89.0 178 38.8
Nn7g35866 Nelumbo nucifera HOM05D003715 ORTHO05D003958 6.4e-16 89.0 293 30.0
CDE02G4343 Ceratophyllum demersum HOM05D003715 ORTHO05D003958 1.1e-15 88.2 191 36.1
Rhsim04G0091400 Rhododendron simsii HOM05D006013 ORTHO05D007383 1.4e-15 87.8 246 32.1
Sopen10g031210 Solanum pennellii HOM05D003715 ORTHO05D003958 1.4e-15 87.8 274 29.2
TAR369G0375 Trochodendron aralioides HOM05D003715 ORTHO05D003958 1.9e-15 87.4 272 29.8
Ah.04g153150 Amaranthus hybridus HOM05D003715 ORTHO05D003958 2.4e-15 87.0 292 28.4
Aqoxy1G00472 Aquilegia oxysepala HOM05D003715 ORTHO05D003958 5.4e-15 85.9 295 30.5
CDE05G3048 Ceratophyllum demersum HOM05D003715 ORTHO05D003958 1.2e-14 84.7 293 28.3
Solyc10g080670.2 Solanum lycopersicum HOM05D003715 ORTHO05D003958 4.6e-14 82.8 163 39.3
AUR62032043 Chenopodium quinoa HOM05D003715 ORTHO05D003958 1.3e-13 81.3 290 27.2
AUR62032710 Chenopodium quinoa HOM05D003715 ORTHO05D003958 2.3e-13 80.5 290 27.9
vmacro09135 Vaccinium macrocarpon HOM05D003715 ORTHO05D003958 2.3e-13 80.5 252 34.5
Os03g0806600 Oryza sativa ssp. japonica HOM05D003715 ORTHO05D003958 5.1e-13 79.3 207 33.8
Os07g0204100 Oryza sativa ssp. japonica HOM05D003715 ORTHO05D003958 6.7e-13 79.0 93 49.5
FAN19G0160 Fragaria x ananassa HOM05D003715 ORTHO05D003958 1.9e-12 77.4 276 31.5
Nitab4.5_0009367g0020 Nicotiana tabacum HOM05D003715 ORTHO05D003958 1.9e-12 77.4 164 35.4
Zm00001eb302900 Zea mays HOM05D003715 ORTHO05D003958 2.5e-12 77.0 95 45.3
Duzib128G0041 Durio zibethinus HOM05D003715 ORTHO05D003958 3.3e-12 76.6 181 35.9
arahy.Tifrunner.gnm1.ann1.FCYU2S Arachis hypogaea HOM05D003715 ORTHO05D003958 9.6e-12 75.1 181 33.1
Nitab4.5_0001079g0120 Nicotiana tabacum HOM05D003715 ORTHO05D003958 9.6e-12 75.1 160 36.9
PSO384G3057 Papaver somniferum HOM05D003715 ORTHO05D003958 1.3e-11 74.7 151 34.4
Lsat_1_v5_gn_2_58261 Lactuca sativa HOM05D003715 ORTHO05D003958 4.8e-11 72.8 257 31.1
Actinidia38611 Actinidia chinensis HOM05D003715 ORTHO05D003958 6.2e-11 72.4 122 41.8
VMungo1383G0996 Vigna mungo HOM05D002467 ORTHO05D013374 1.4e-10 71.2 69 53.6
SEGI_20586 Sequoiadendron giganteum HOM05D003715 ORTHO05D003958 5.3e-10 69.3 103 41.7
HPP92_014229 Vanilla planifolia HOM05D035551 ORTHO05D003958 3.4e-09 66.6 192 29.7
PGSC0003DMG400023700 Solanum tuberosum HOM05D003715 ORTHO05D003958 7.6e-09 65.5 212 31.6
PSO782G0808 Papaver somniferum HOM05D003715 ORTHO05D003958 9.3e-07 58.5 140 32.1


User provided reference genes

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