Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT5G17670 Arabidopsis thaliana HOM05D006927 ORTHO05D009065 1.1e-181 639.8 310 100.0
AL6G28760 Arabidopsis lyrata HOM05D006927 ORTHO05D009065 2.0e-172 609.0 314 94.6
Carub.0006s1591 Capsella rubella HOM05D006927 ORTHO05D009065 9.2e-165 583.6 317 89.3
Sp6g26550 Schrenkiella parvula HOM05D006927 ORTHO05D009065 1.1e-162 576.6 317 88.6
BcaC03g13532 Brassica carinata HOM05D006927 ORTHO05D009065 6.8e-160 567.4 315 87.9
Thhalv10014137m.g Eutrema salsugineum HOM05D006927 ORTHO05D009065 3.7e-158 561.6 318 87.1
A02p04400 Brassica napus HOM05D006927 ORTHO05D009065 6.4e-158 560.8 319 86.5
C02p09230 Brassica napus HOM05D006927 ORTHO05D009065 1.4e-157 559.7 319 86.5
Aa31LG11G11960 Aethionema arabicum HOM05D006927 ORTHO05D009065 1.1e-141 506.9 350 74.3
THA.LOC104820815 Tarenaya hassleriana HOM05D006927 ORTHO05D009065 7.8e-140 500.7 316 77.2
Duzib177G0162 Durio zibethinus HOM05D006927 ORTHO05D009065 1.9e-130 469.5 312 73.4
Gorai.007G250200 Gossypium raimondii HOM05D006927 ORTHO05D009065 3.3e-130 468.8 302 73.2
Thecc.05G234500 Theobroma cacao HOM05D006927 ORTHO05D009065 1.4e-128 463.4 309 73.1
Gohir.A11G224222 Gossypium hirsutum HOM05D006927 ORTHO05D009065 2.6e-127 459.1 297 73.1
QL04p053394 Quercus lobata HOM05D006927 ORTHO05D009065 4.9e-126 454.9 315 71.4
Potri.013G070700 Populus trichocarpa HOM05D006927 ORTHO05D009065 8.4e-126 454.1 313 70.0
Manes.09G133500 Manihot esculenta HOM05D006927 ORTHO05D009065 1.9e-125 453.0 304 72.4
RcHm_v2.0_Chr1g0340711 Rosa chinensis HOM05D006927 ORTHO05D009065 1.9e-125 453.0 311 70.7
Cpa.g.sc73.27 Carica papaya HOM05D006927 ORTHO05D009065 2.4e-125 452.6 302 72.2
Atru.chr2.1634 Acer truncatum HOM05D006927 ORTHO05D009065 3.2e-125 452.2 340 66.2
FAN03G0521 Fragaria x ananassa HOM05D006927 ORTHO05D009065 1.6e-124 449.9 312 70.5
Ciclev10032190m.g Citrus clementina HOM05D006927 ORTHO05D009065 4.6e-124 448.4 295 72.2
GSVIVG01019324001 Vitis vinifera HOM05D006927 ORTHO05D009065 1.0e-123 447.2 303 70.3
Dinv43961 Davidia involucrata HOM05D006927 ORTHO05D009065 1.3e-123 446.8 309 70.6
Eucgr.D01080 Eucalyptus grandis HOM05D006927 ORTHO05D009065 3.0e-123 445.7 281 75.1
FvH4_7g08340 Fragaria vesca HOM05D006927 ORTHO05D009065 3.0e-123 445.7 312 69.9
CSS0031880 Camellia sinensis var. sinensis HOM05D006927 ORTHO05D009065 6.7e-123 444.5 284 72.5
CSS0044270 Camellia sinensis var. sinensis HOM05D006927 ORTHO05D009065 1.5e-122 443.4 284 73.9
Prupe.2G106800 Prunus persica HOM05D006927 ORTHO05D009065 1.5e-122 443.4 316 70.3
Cc02_g26470 Coffea canephora HOM05D006927 ORTHO05D009065 3.3e-122 442.2 310 70.3
Rhsim07G0047700 Rhododendron simsii HOM05D006927 ORTHO05D009065 4.3e-122 441.8 315 68.9
FAN10G1940 Fragaria x ananassa HOM05D006927 ORTHO05D009065 9.6e-122 440.7 320 68.1
Lsat_1_v5_gn_1_89341 Lactuca sativa HOM05D006927 ORTHO05D009065 4.8e-121 438.3 309 68.9
Peaxi162Scf00907g00025 Petunia axillaris HOM05D006927 ORTHO05D009065 6.2e-121 438.0 296 70.3
Migut.B01420 Erythranthe guttata HOM05D006927 ORTHO05D009065 8.1e-121 437.6 288 71.2
SalBow5G1207 Salvia bowleyana HOM05D006927 ORTHO05D009065 1.4e-120 436.8 295 69.5
TWI34G1327 Tripterygium wilfordii HOM05D006927 ORTHO05D009065 4.0e-120 435.3 292 70.2
Sed0018978 Sechium edule HOM05D006927 ORTHO05D009065 6.9e-120 434.5 302 69.5
FAN06G3009 Fragaria x ananassa HOM05D006927 ORTHO05D009065 2.0e-119 433.0 330 65.8
Lj1g0006598 Lotus japonicus HOM05D006927 ORTHO05D009065 4.5e-119 431.8 312 67.6
CsaV3_6G006390 Cucumis sativus L. HOM05D006927 ORTHO05D009065 1.7e-118 429.9 318 67.3
DCAR_001906 Daucus carota HOM05D006927 ORTHO05D009065 1.7e-118 429.9 292 69.9
Os02g0129900 Oryza sativa ssp. japonica HOM05D006927 ORTHO05D009065 1.7e-118 429.9 301 71.1
Nitab4.5_0006785g0060 Nicotiana tabacum HOM05D006927 ORTHO05D009065 2.2e-118 429.5 298 69.1
Solyc01g081480.3 Solanum lycopersicum HOM05D006927 ORTHO05D009065 2.2e-118 429.5 294 69.7
Ah.16g104050 Amaranthus hybridus HOM05D006927 ORTHO05D009065 4.9e-118 428.3 302 67.9
HanXRQChr01g0018481 Helianthus annuus HOM05D006927 ORTHO05D009065 1.4e-117 426.8 298 68.8
Sopen01g033040 Solanum pennellii HOM05D006927 ORTHO05D009065 1.4e-117 426.8 294 69.7
Nitab4.5_0000792g0130 Nicotiana tabacum HOM05D006927 ORTHO05D009065 1.9e-117 426.4 292 69.2
PGSC0003DMG400031110 Solanum tuberosum HOM05D006927 ORTHO05D009065 1.9e-117 426.4 299 68.2
MELO3C022480.2 Cucumis melo HOM05D006927 ORTHO05D009065 4.2e-117 425.2 318 66.4
Aqoxy1G00986 Aquilegia oxysepala HOM05D006927 ORTHO05D009065 1.2e-116 423.7 317 64.7
VMungo0251G3349 Vigna mungo HOM05D006927 ORTHO05D009065 1.2e-116 423.7 296 68.2
Sc11g0005590 Simmondsia chinensis HOM05D006927 ORTHO05D009065 1.6e-116 423.3 302 68.2
PGR083G0610 Punica granatum HOM05D006927 ORTHO05D009065 2.1e-116 422.9 290 70.3
COL.COLO4_21417 Corchorus olitorius HOM05D006927 ORTHO05D009065 2.7e-116 422.5 271 73.4
Zm00001eb208940 Zea mays HOM05D006927 ORTHO05D009065 1.3e-115 420.2 308 68.2
Lj9A617T58 Lonicera japonica HOM05D006927 ORTHO05D009065 8.7e-115 417.5 276 72.8
Haze_15787 Corylus avellana HOM05D006927 ORTHO05D009065 1.1e-114 417.2 307 68.7
TAR629G3441 Trochodendron aralioides HOM05D006927 ORTHO05D009065 1.1e-114 417.2 279 71.0
MD07G1081500 Malus domestica HOM05D006927 ORTHO05D009065 2.5e-114 416.0 276 71.4
ECA248G1152 Erigeron canadensis HOM05D006927 ORTHO05D009065 4.3e-114 415.2 291 66.7
CAN.G992.25 Capsicum annuum HOM05D006927 ORTHO05D009065 3.7e-113 412.1 303 66.3
Glyma.06G001500 Glycine max HOM05D006927 ORTHO05D009065 1.1e-112 410.6 304 67.4
CANSAT25G2771 Cannabis sativa HOM05D006927 ORTHO05D009065 6.9e-112 407.9 308 64.6
Medtr3g118320 Medicago truncatula HOM05D006927 ORTHO05D009065 6.9e-112 407.9 301 66.4
arahy.Tifrunner.gnm1.ann1.DTN3WJ Arachis hypogaea HOM05D006927 ORTHO05D009065 4.5e-111 405.2 295 67.5
vmacro13598 Vaccinium macrocarpon HOM05D006927 ORTHO05D009065 1.0e-110 404.1 397 54.4
Phvul.002G317100 Phaseolus vulgaris HOM05D006927 ORTHO05D009065 1.3e-110 403.7 298 64.8
arahy.Tifrunner.gnm1.ann1.A7PVHI Arachis hypogaea HOM05D006927 ORTHO05D009065 4.9e-110 401.7 295 67.1
ClCG06G000620 Citrullus lanatus HOM05D006927 ORTHO05D009065 8.4e-110 401.0 340 60.6
ATR0568G108 Amborella trichopoda HOM05D006927 ORTHO05D009065 3.2e-109 399.1 290 64.5
PSO675G5316 Papaver somniferum HOM05D006927 ORTHO05D009065 4.2e-109 398.7 317 63.1
MBI04_g06278_MAGBIO Magnolia biondii HOM05D006927 ORTHO05D009065 1.8e-107 393.3 277 67.5
TPR.G38566 Trifolium pratense HOM05D006927 ORTHO05D009065 5.1e-107 391.7 302 64.9
Ca_15418_v3 Cicer arietinum L. HOM05D006927 ORTHO05D009065 5.7e-106 388.3 299 65.9
SGA_v2.0_scaffold98G29375 Striga asiatica HOM05D006927 ORTHO05D009065 1.2e-103 380.6 293 64.5
BolC2t06832H Brassica oleracea HOM05D006927 ORTHO05D009065 1.1e-98 364.0 194 90.2
FAN01G0804 Fragaria x ananassa HOM05D006927 ORTHO05D009065 2.5e-98 362.8 306 62.1
BraA02t05404Z Brassica rapa HOM05D006927 ORTHO05D009065 6.3e-97 358.2 194 89.7
Lalb_Chr08g0246751 Lupinus albus HOM05D006927 ORTHO05D009065 8.2e-97 357.8 293 59.0
Pp3c20_10810 Physcomitrium patens HOM05D006927 ORTHO05D009065 8.2e-97 357.8 325 54.5
Mapoly0110s0034 Marchantia polymorpha HOM05D006927 ORTHO05D009065 5.9e-95 351.7 291 59.5
CDE02G0279 Ceratophyllum demersum HOM05D006927 ORTHO05D009065 2.9e-94 349.4 298 56.4
AagrBONN_evm.TU.Sc2ySwM_228.4179 Anthoceros agrestis HOM05D006927 ORTHO05D009065 4.2e-93 345.5 299 54.2
Sabra13G0061600 Salix brachista HOM05D006927 ORTHO05D009065 7.9e-92 341.3 351 53.3
MD02G1231900 Malus domestica HOM05D006927 ORTHO05D009065 5.7e-90 335.1 249 65.9
SMO141G0137 Selaginella moellendorffii HOM05D006927 ORTHO05D009065 1.0e-83 314.3 294 53.4
Psat5g000960 Pisum sativum HOM05D006927 ORTHO05D009065 3.7e-81 305.8 230 66.1
Dinv43521 Davidia involucrata HOM05D006927 ORTHO05D009065 2.6e-79 299.7 202 70.8
Nn1g09344 Nelumbo nucifera HOM05D006927 ORTHO05D009065 4.7e-76 288.9 181 74.0
CARHR195510 Cardamine hirsuta HOM05D006927 ORTHO05D009065 4.0e-75 285.8 162 85.8
Oeu034881.1 Olea europaea HOM05D006927 ORTHO05D009065 6.7e-75 285.0 184 71.7
CiPaw.02G047300 Carya illinoinensis HOM05D006927 ORTHO05D009065 3.5e-71 272.7 163 79.8
Actinidia31733 Actinidia chinensis HOM05D006927 ORTHO05D009065 4.2e-69 265.8 178 71.3
MCO09G674 Micromonas commoda HOM05D006927 ORTHO05D009065 8.0e-68 261.5 276 46.4
HPP92_025548 Vanilla planifolia HOM05D006927 ORTHO05D009065 3.4e-66 256.1 177 68.4
Cre07.g313550 Chlamydomonas reinhardtii HOM05D006927 ORTHO05D009065 2.7e-63 246.5 293 42.3
Aqoxy116s007 Aquilegia oxysepala HOM05D006927 ORTHO05D009065 1.3e-62 244.2 265 49.4
PRCOL_00002784 Prasinoderma coloniale HOM05D006927 ORTHO05D009065 8.9e-59 231.5 305 42.6
Gohir.D11G237100 Gossypium hirsutum HOM05D006927 ORTHO05D009065 2.3e-54 216.9 136 75.7
unitig_26.g8847 Utricularia gibba HOM05D006927 ORTHO05D009065 4.1e-48 196.1 147 63.9
unitig_26.g8846 Utricularia gibba HOM05D006927 ORTHO05D009065 1.3e-33 147.9 99 66.7
PRCOL_00000683 Prasinoderma coloniale HOM05D006927 ORTHO05D009065 4.1e-32 142.9 283 35.7
MCO02G275 Micromonas commoda HOM05D006927 ORTHO05D044296 4.6e-31 139.4 320 32.5
BcaB08g36753 Brassica carinata HOM05D006927 ORTHO05D009065 5.6e-29 132.5 109 67.0
Cre01.g025150 Chlamydomonas reinhardtii HOM05D006927 ORTHO05D044296 3.1e-27 126.7 330 28.5
Actinidia34774 Actinidia chinensis HOM05D006927 ORTHO05D009065 5.2e-27 125.9 108 57.4
Thecc.05G234900 Theobroma cacao HOM05D006927 ORTHO05D009065 1.7e-25 120.9 60 83.3
SEGI_38351 Sequoiadendron giganteum HOM05D006927 ORTHO05D009065 4.6e-23 112.8 100 55.0
HPP92_025520 Vanilla planifolia HOM05D006927 ORTHO05D009065 4.0e-19 99.8 154 43.5
C09p59490 Brassica napus HOM05D000005 ORTHO05D040849 1.5e-13 81.3 157 36.9
PRCOL_00002844 Prasinoderma coloniale HOM05D006927 ORTHO05D049054 2.8e-12 77.0 151 36.4
AagrBONN_evm.TU.Sc2ySwM_368.1936 Anthoceros agrestis HOM05D006927 ORTHO05D071668 6.2e-12 75.9 233 25.8
MCO12G090 Micromonas commoda HOM05D006927 ORTHO05D049054 4.0e-11 73.2 357 24.9
CBR_g4745 Chara braunii HOM05D000019 ORTHO05D000002 2.2e-09 67.4 68 44.1


User provided reference genes

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