Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT5G17620 Arabidopsis thaliana HOM05D004483 ORTHO05D005609 5.7e-181 637.5 330 100.0
AL6G28710 Arabidopsis lyrata HOM05D004483 ORTHO05D005609 3.1e-179 631.7 330 99.1
CARHR195560 Cardamine hirsuta HOM05D004483 ORTHO05D005609 1.2e-178 629.8 330 98.8
Sp6g26600 Schrenkiella parvula HOM05D004483 ORTHO05D005609 1.6e-178 629.4 330 98.8
Carub.0006s1586 Capsella rubella HOM05D004483 ORTHO05D005609 2.0e-178 629.0 330 98.5
Thhalv10014088m.g Eutrema salsugineum HOM05D004483 ORTHO05D005609 4.5e-178 627.9 330 98.5
A02p04370 Brassica napus HOM05D004483 ORTHO05D005609 2.2e-177 625.5 330 97.9
C02p09220 Brassica napus HOM05D004483 ORTHO05D005609 2.2e-177 625.5 330 97.9
BolC2t06830H Brassica oleracea HOM05D004483 ORTHO05D005609 2.2e-177 625.5 330 97.9
BraA02t05401Z Brassica rapa HOM05D004483 ORTHO05D005609 2.2e-177 625.5 330 97.9
Aa31LG11G12020 Aethionema arabicum HOM05D004483 ORTHO05D005609 2.1e-175 619.0 329 96.7
BcaB08g36758 Brassica carinata HOM05D004483 ORTHO05D005609 3.5e-170 601.7 330 94.2
BcaC03g13531 Brassica carinata HOM05D004483 ORTHO05D005609 7.2e-168 594.0 331 94.9
THA.LOC104802894 Tarenaya hassleriana HOM05D004483 ORTHO05D005609 1.0e-161 573.5 325 91.1
THA.LOC104821152 Tarenaya hassleriana HOM05D004483 ORTHO05D005609 4.2e-160 568.2 314 93.0
Ciclev10032078m.g Citrus clementina HOM05D004483 ORTHO05D005609 5.5e-160 567.8 329 87.5
Atru.chr13.1412 Acer truncatum HOM05D004483 ORTHO05D005609 6.1e-159 564.3 329 86.9
COL.COLO4_28409 Corchorus olitorius HOM05D004483 ORTHO05D005609 6.1e-159 564.3 328 86.9
Duzib106G2041 Durio zibethinus HOM05D004483 ORTHO05D005609 6.1e-159 564.3 329 86.6
Thecc.05G233500 Theobroma cacao HOM05D004483 ORTHO05D005609 8.0e-159 563.9 329 86.9
Manes.08G157300 Manihot esculenta HOM05D004483 ORTHO05D005609 1.0e-158 563.5 325 87.4
ClCG05G002520 Citrullus lanatus HOM05D004483 ORTHO05D005609 3.0e-158 562.0 328 85.7
CsaV3_3G009970 Cucumis sativus L. HOM05D004483 ORTHO05D005609 2.0e-157 559.3 328 85.4
MELO3C006218.2 Cucumis melo HOM05D004483 ORTHO05D005609 5.7e-157 557.8 328 85.4
FAN10G0570 Fragaria x ananassa HOM05D004483 ORTHO05D005609 1.7e-156 556.2 329 86.3
TWI32G0950 Tripterygium wilfordii HOM05D004483 ORTHO05D005609 1.7e-156 556.2 329 84.8
TWI34G1657 Tripterygium wilfordii HOM05D004483 ORTHO05D005609 2.2e-156 555.8 329 84.8
FvH4_7g07660 Fragaria vesca HOM05D004483 ORTHO05D005609 3.7e-156 555.1 329 86.0
Gohir.A08G221606 Gossypium hirsutum HOM05D004483 ORTHO05D005609 3.7e-156 555.1 325 86.8
Gohir.D08G238633 Gossypium hirsutum HOM05D004483 ORTHO05D005609 3.7e-156 555.1 325 86.8
RcHm_v2.0_Chr1g0342701 Rosa chinensis HOM05D004483 ORTHO05D005609 4.9e-156 554.7 327 86.2
Prupe.2G104100 Prunus persica HOM05D004483 ORTHO05D005609 6.3e-156 554.3 326 86.2
Lalb_Chr07g0191411 Lupinus albus HOM05D004483 ORTHO05D005609 8.3e-156 553.9 329 85.1
Eucgr.E01755 Eucalyptus grandis HOM05D004483 ORTHO05D005609 1.1e-155 553.5 327 85.9
CiPaw.12G019400 Carya illinoinensis HOM05D004483 ORTHO05D005609 1.8e-155 552.7 328 85.1
FAN06G2294 Fragaria x ananassa HOM05D004483 ORTHO05D005609 1.8e-155 552.7 329 85.7
Potri.013G072300 Populus trichocarpa HOM05D004483 ORTHO05D005609 1.2e-154 550.1 326 85.0
arahy.Tifrunner.gnm1.ann1.WXIR9M Arachis hypogaea HOM05D004483 ORTHO05D005609 2.7e-154 548.9 329 84.8
Sabra13G0062300 Salix brachista HOM05D004483 ORTHO05D005609 2.7e-154 548.9 326 84.7
Sed0016930 Sechium edule HOM05D004483 ORTHO05D005609 2.7e-154 548.9 328 84.1
Glyma.01G118200 Glycine max HOM05D004483 ORTHO05D005609 3.5e-154 548.5 329 85.7
PGR042G2637 Punica granatum HOM05D004483 ORTHO05D005609 4.5e-154 548.1 329 84.2
Lj3g0001477 Lotus japonicus HOM05D004483 ORTHO05D005609 1.3e-153 546.6 328 84.8
CANSAT78G0548 Cannabis sativa HOM05D004483 ORTHO05D005609 2.3e-153 545.8 325 85.2
VMungo0331G1733 Vigna mungo HOM05D004483 ORTHO05D005609 2.3e-153 545.8 329 85.1
TPR.G40218 Trifolium pratense HOM05D004483 ORTHO05D005609 2.9e-153 545.4 329 84.2
Phvul.010G078100 Phaseolus vulgaris HOM05D004483 ORTHO05D005609 6.6e-153 544.3 329 84.8
Sopen01g032950 Solanum pennellii HOM05D004483 ORTHO05D005609 1.9e-152 542.7 327 84.1
MD07G1080100 Malus domestica HOM05D004483 ORTHO05D005609 3.3e-152 542.0 329 83.9
PGSC0003DMG400001780 Solanum tuberosum HOM05D004483 ORTHO05D005609 3.3e-152 542.0 327 83.8
arahy.Tifrunner.gnm1.ann1.V3P46G Arachis hypogaea HOM05D004483 ORTHO05D005609 4.3e-152 541.6 335 83.3
CAN.G992.14 Capsicum annuum HOM05D004483 ORTHO05D005609 4.3e-152 541.6 327 83.8
SGA_v2.0_scaffold95G28749 Striga asiatica HOM05D004483 ORTHO05D005609 4.3e-152 541.6 327 83.2
Ca_04019_v3 Cicer arietinum L. HOM05D004483 ORTHO05D005609 5.6e-152 541.2 328 84.1
Medtr5g046560 Medicago truncatula HOM05D004483 ORTHO05D005609 5.6e-152 541.2 329 83.3
Solyc01g081380.4 Solanum lycopersicum HOM05D004483 ORTHO05D005609 5.6e-152 541.2 327 84.1
Dinv43526 Davidia involucrata HOM05D004483 ORTHO05D005609 9.5e-152 540.4 327 82.6
Peaxi162Scf00907g00220 Petunia axillaris HOM05D004483 ORTHO05D005609 9.5e-152 540.4 328 83.8
TAR636G1741 Trochodendron aralioides HOM05D004483 ORTHO05D005609 1.6e-151 539.7 327 82.9
Cc00_g12630 Coffea canephora HOM05D004483 ORTHO05D005609 2.1e-151 539.3 327 82.6
Glyma.03G055200 Glycine max HOM05D004483 ORTHO05D005609 2.8e-151 538.9 329 84.2
Glyma.U006202 Glycine max HOM05D004483 ORTHO05D005609 2.8e-151 538.9 329 84.2
Medtr6g049240 Medicago truncatula HOM05D004483 ORTHO05D005609 2.8e-151 538.9 329 82.7
Migut.N01676 Erythranthe guttata HOM05D004483 ORTHO05D005609 4.7e-151 538.1 327 82.9
Nitab4.5_0000792g0040 Nicotiana tabacum HOM05D004483 ORTHO05D005609 6.1e-151 537.7 325 84.0
Cpa.g.sc73.74 Carica papaya HOM05D004483 ORTHO05D005609 8.0e-151 537.3 327 85.0
TAR636G0699 Trochodendron aralioides HOM05D004483 ORTHO05D005609 1.0e-150 537.0 327 82.3
Psat0s3493g0040 Pisum sativum HOM05D004483 ORTHO05D005609 4.0e-150 535.0 328 83.2
MSTRG.4986 Avicennia marina HOM05D004483 ORTHO05D005609 6.8e-150 534.3 327 82.0
Nitab4.5_0012495g0010 Nicotiana tabacum HOM05D004483 ORTHO05D005609 6.8e-150 534.3 328 83.2
Gorai.004G254100 Gossypium raimondii HOM05D004483 ORTHO05D005609 2.0e-149 532.7 363 77.4
Rhsim07G0047000 Rhododendron simsii HOM05D004483 ORTHO05D005609 2.0e-149 532.7 329 80.5
AUR62033324 Chenopodium quinoa HOM05D004483 ORTHO05D005609 2.6e-149 532.3 327 81.7
AUR62033335 Chenopodium quinoa HOM05D004483 ORTHO05D005609 2.6e-149 532.3 327 81.7
Rhsim07G0125200 Rhododendron simsii HOM05D004483 ORTHO05D005609 2.6e-149 532.3 329 80.2
AUR62004320 Chenopodium quinoa HOM05D004483 ORTHO05D005609 3.4e-149 531.9 327 81.7
HanXRQChr01g0019801 Helianthus annuus HOM05D004483 ORTHO05D005609 7.5e-149 530.8 328 80.5
GSVIVG01019237001 Vitis vinifera HOM05D004483 ORTHO05D005609 7.5e-149 530.8 381 74.0
Sc26g0000980 Simmondsia chinensis HOM05D004483 ORTHO05D005609 1.7e-148 529.6 327 82.0
CSS0005411 Camellia sinensis var. sinensis HOM05D004483 ORTHO05D005609 2.9e-148 528.9 329 79.9
CSS0029990 Camellia sinensis var. sinensis HOM05D004483 ORTHO05D005609 3.7e-148 528.5 329 80.5
ECA248G0203 Erigeron canadensis HOM05D004483 ORTHO05D005609 1.1e-147 526.9 327 80.1
Lsat_1_v5_gn_1_89980 Lactuca sativa HOM05D004483 ORTHO05D005609 1.9e-147 526.2 328 79.3
Hund27300 Selenicereus undatus HOM05D004483 ORTHO05D005609 3.2e-147 525.4 327 81.3
EL10Ac1g00530 Beta vulgaris HOM05D004483 ORTHO05D005609 9.2e-147 523.9 326 80.7
FvH4_3g28610 Fragaria vesca HOM05D004483 ORTHO05D005609 9.2e-147 523.9 327 81.0
HanXRQChr11g0343751 Helianthus annuus HOM05D004483 ORTHO05D005609 9.2e-147 523.9 329 79.9
vmacro13592 Vaccinium macrocarpon HOM05D004483 ORTHO05D005609 1.2e-146 523.5 356 75.6
Potri.019G044100 Populus trichocarpa HOM05D004483 ORTHO05D005609 2.7e-146 522.3 329 81.5
Nn7g36866 Nelumbo nucifera HOM05D004483 ORTHO05D005609 6.0e-146 521.2 327 81.7
FAN21G3783 Fragaria x ananassa HOM05D004483 ORTHO05D005609 5.6e-144 514.6 327 79.8
FAN25G2123 Fragaria x ananassa HOM05D004483 ORTHO05D005609 9.5e-144 513.8 327 79.8
PSO170G6334 Papaver somniferum HOM05D004483 ORTHO05D005609 1.5e-141 506.5 331 77.0
PSO782G4616 Papaver somniferum HOM05D004483 ORTHO05D005609 4.4e-141 505.0 331 76.7
QL04p053109 Quercus lobata HOM05D004483 ORTHO05D005609 2.9e-140 502.3 451 61.9
TAR636G1618 Trochodendron aralioides HOM05D004483 ORTHO05D005609 1.9e-139 499.6 304 82.6
ATR0736G160 Amborella trichopoda HOM05D004483 ORTHO05D005609 3.2e-139 498.8 328 76.8
TPR.G9231 Trifolium pratense HOM05D004483 ORTHO05D005609 3.5e-138 495.4 329 77.5
CDE08G1003 Ceratophyllum demersum HOM05D004483 ORTHO05D005609 6.0e-138 494.6 328 76.8
SalBow4G2429 Salvia bowleyana HOM05D004483 ORTHO05D005609 7.3e-136 487.6 300 81.7
MD02G1233500 Malus domestica HOM05D004483 ORTHO05D005609 2.8e-135 485.7 329 77.8
Cfa001833 Carpinus fangiana HOM05D004483 ORTHO05D005609 4.7e-135 485.0 330 77.0
Medtr4g017150 Medicago truncatula HOM05D004483 ORTHO05D005609 4.9e-132 474.9 329 76.3
Os01g0869500 Oryza sativa ssp. japonica HOM05D004483 ORTHO05D005609 1.4e-131 473.4 329 71.7
SEGI_12813 Sequoiadendron giganteum HOM05D004483 ORTHO05D005609 7.1e-131 471.1 330 72.1
Zm00001eb172120 Zea mays HOM05D004483 ORTHO05D005609 1.1e-128 463.8 330 70.6
FAN25G2538 Fragaria x ananassa HOM05D004483 ORTHO05D005609 1.9e-128 463.0 368 67.4
CSS0030130 Camellia sinensis var. sinensis HOM05D004483 ORTHO05D005609 8.9e-126 454.1 299 76.9
Actinidia05827 Actinidia chinensis HOM05D004483 ORTHO05D005609 7.1e-123 444.5 326 71.2
A10p21790 Brassica napus HOM05D004483 ORTHO05D005609 1.7e-121 439.9 275 85.1
DCAR_025006 Daucus carota HOM05D004483 ORTHO05D005609 3.9e-121 438.7 328 70.7
MBI07_g00286_MAGBIO Magnolia biondii HOM05D004483 ORTHO05D005609 3.6e-119 432.2 279 77.1
Lj7A559T94 Lonicera japonica HOM05D004483 ORTHO05D005609 5.3e-118 428.3 332 69.6
BraA10t44239Z Brassica rapa HOM05D004483 ORTHO05D005609 7.6e-117 424.5 316 75.0
unitig_61.g26200 Utricularia gibba HOM05D004483 ORTHO05D005609 7.1e-115 417.9 323 69.7
SMO266G0007 Selaginella moellendorffii HOM05D004483 ORTHO05D005609 4.5e-109 398.7 318 62.6
Mapoly0042s0051 Marchantia polymorpha HOM05D004483 ORTHO05D005609 5.8e-109 398.3 330 62.1
Pp3c21_22490 Physcomitrium patens HOM05D004483 ORTHO05D005609 9.9e-109 397.5 324 60.2
TPR.G14295 Trifolium pratense HOM05D004483 ORTHO05D005609 1.2e-106 390.6 234 84.6
BcaC04g18774 Brassica carinata HOM05D004483 ORTHO05D005609 2.7e-106 389.4 336 68.8
CSS0038619 Camellia sinensis var. sinensis HOM05D004483 ORTHO05D005609 1.4e-99 367.1 233 78.1
Cfa003690 Carpinus fangiana HOM05D004483 ORTHO05D005609 3.3e-88 329.3 329 59.0
Peaxi162Scf00040g00103 Petunia axillaris HOM05D004483 ORTHO05D005609 2.2e-87 326.6 225 73.8
MD02G1233800 Malus domestica HOM05D004483 ORTHO05D005609 1.8e-86 323.6 197 83.8
HPP92_018030 Vanilla planifolia HOM05D004483 ORTHO05D005609 5.3e-86 322.0 235 66.8
C09p59550 Brassica napus HOM05D004483 ORTHO05D005609 3.8e-84 315.8 330 60.6
Haze_16727 Corylus avellana HOM05D004483 ORTHO05D005609 8.8e-81 304.7 220 74.5
Haze_25407 Corylus avellana HOM05D004483 ORTHO05D005609 3.7e-79 299.3 220 73.2
Haze_15797 Corylus avellana HOM05D004483 ORTHO05D005609 4.5e-77 292.4 220 72.7
CBR_g5742 Chara braunii HOM05D004483 ORTHO05D005609 4.7e-74 282.3 339 44.2
Oeu041518.1 Olea europaea HOM05D004483 ORTHO05D005609 6.1e-74 282.0 167 83.8
Duzib106G1834 Durio zibethinus HOM05D004483 ORTHO05D005609 7.4e-72 275.0 162 85.2
Migut.O00822 Erythranthe guttata HOM05D004483 ORTHO05D005609 9.4e-67 258.1 160 79.4
Actinidia31738 Actinidia chinensis HOM05D004483 ORTHO05D005609 1.2e-61 241.1 268 54.5
Haze_16728 Corylus avellana HOM05D004483 ORTHO05D005609 1.5e-59 234.2 133 86.5
Haze_15798 Corylus avellana HOM05D004483 ORTHO05D005609 2.8e-55 219.9 130 84.6
BolC9t58793H Brassica oleracea HOM05D004483 ORTHO05D005609 1.3e-52 211.1 163 74.2
FAN16G0129 Fragaria x ananassa HOM05D004483 ORTHO05D005609 6.1e-42 175.6 98 85.7
SHI14405 Sapria himalayana HOM05D004483 ORTHO05D005609 1.0e-41 174.9 150 61.3
SHI14408 Sapria himalayana HOM05D004483 ORTHO05D005609 2.0e-37 160.6 195 51.3
MD02G1235300 Malus domestica HOM05D004483 ORTHO05D005609 2.5e-35 153.7 89 85.4
MD09G1234100 Malus domestica HOM05D004483 ORTHO05D005609 2.1e-34 150.6 103 72.8
RcHm_v2.0_Chr2g0157591 Rosa chinensis HOM05D004483 ORTHO05D005609 3.1e-33 146.7 89 80.9
arahy.Tifrunner.gnm1.ann1.H3K4HU Arachis hypogaea HOM05D004483 ORTHO05D005609 1.9e-30 137.5 88 80.7
MD02G1233900 Malus domestica HOM05D004483 ORTHO05D005609 2.0e-29 134.0 69 89.9
TWI32G0329 Tripterygium wilfordii HOM05D004483 ORTHO05D005609 2.0e-29 134.0 77 85.7
Peaxi162Scf00040g00102 Petunia axillaris HOM05D004483 ORTHO05D005609 1.0e-28 131.7 88 77.3
Medtr5g046460 Medicago truncatula HOM05D004483 ORTHO05D005609 2.1e-26 124.0 74 83.8
RcHm_v2.0_Chr3g0469881 Rosa chinensis HOM05D004483 ORTHO05D005609 3.1e-25 120.2 72 80.6
arahy.Tifrunner.gnm1.ann1.RIX38N Arachis hypogaea HOM05D004483 ORTHO05D005609 5.2e-25 119.4 82 70.7
arahy.Tifrunner.gnm1.ann1.AX0BTM Arachis hypogaea HOM05D004483 ORTHO05D005609 8.3e-23 112.1 151 43.7
CSS0040869 Camellia sinensis var. sinensis HOM05D004483 ORTHO05D005609 2.4e-22 110.5 65 80.0
MD02G1234000 Malus domestica HOM05D004483 ORTHO05D005609 1.0e-20 105.1 64 81.2
RcHm_v2.0_Chr1g0342751 Rosa chinensis HOM05D004483 ORTHO05D005609 1.0e-20 105.1 69 76.8
Haze_25412 Corylus avellana HOM05D004483 ORTHO05D005609 3.1e-17 93.6 63 74.6
BcaC03g13840 Brassica carinata HOM05D007309 ORTHO05D040036 1.5e-08 64.7 77 48.1
arahy.Tifrunner.gnm1.ann1.LP3G76 Arachis hypogaea HOM05D004483 ORTHO05D083770 4.4e-08 63.2 85 48.2
CSS0035749 Camellia sinensis var. sinensis HOM05D004483 ORTHO05D111617 2.2e-07 60.8 33 84.8
A10p19460 Brassica napus HOM05D004483 ORTHO05D101033 3.8e-07 60.1 37 81.1


User provided reference genes

Program Settings