Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT5G17523 Arabidopsis thaliana HOM05D005356 ORTHO05D006596 4.0e-145 518.1 262 100.0
AT5G17520 Arabidopsis thaliana HOM05D005356 ORTHO05D006596 3.4e-120 435.3 227 98.2
AL6G28610 Arabidopsis lyrata HOM05D005356 ORTHO05D006596 4.6e-109 398.3 232 89.7
Sp6g26700 Schrenkiella parvula HOM05D005356 ORTHO05D006596 3.2e-86 322.4 238 73.5
CARHR195670 Cardamine hirsuta HOM05D005356 ORTHO05D006596 3.6e-85 318.9 235 75.3
BraA10t44246Z Brassica rapa HOM05D005356 ORTHO05D006596 1.5e-80 303.5 233 71.2
A10p21860 Brassica napus HOM05D005356 ORTHO05D006596 5.9e-80 301.6 233 71.2
BcaB08g36764 Brassica carinata HOM05D005356 ORTHO05D006596 1.7e-79 300.1 234 70.1
A10p21870 Brassica napus HOM05D005356 ORTHO05D006596 2.2e-79 299.7 233 70.8
BcaC04g18781 Brassica carinata HOM05D005356 ORTHO05D006596 3.2e-78 295.8 235 69.4
C09p59620 Brassica napus HOM05D005356 ORTHO05D006596 2.7e-77 292.7 233 69.1
BolC9t58801H Brassica oleracea HOM05D005356 ORTHO05D006596 2.7e-77 292.7 233 69.1
Aa31LG11G12150 Aethionema arabicum HOM05D005356 ORTHO05D006596 8.8e-76 287.7 220 72.3
BolC2t06824H Brassica oleracea HOM05D005356 ORTHO05D006596 1.7e-74 283.5 232 69.4
A02p04240 Brassica napus HOM05D005356 ORTHO05D006596 5.3e-73 278.5 218 70.6
BraA02t05387Z Brassica rapa HOM05D005356 ORTHO05D006596 5.3e-73 278.5 218 70.6
C02p09120 Brassica napus HOM05D005356 ORTHO05D006596 2.9e-71 272.7 223 69.5
THA.LOC104802905 Tarenaya hassleriana HOM05D005356 ORTHO05D006596 3.6e-69 265.8 236 62.7
THA.LOC104820830 Tarenaya hassleriana HOM05D005356 ORTHO05D006596 2.6e-67 259.6 237 62.9
BcaC03g13524 Brassica carinata HOM05D005356 ORTHO05D006596 4.4e-67 258.8 192 74.0
COL.COLO4_32921 Corchorus olitorius HOM05D005356 ORTHO05D006596 7.2e-54 214.9 229 55.0
Thecc.05G227000 Theobroma cacao HOM05D005356 ORTHO05D006596 8.9e-52 208.0 227 54.2
Cpa.g.sc43.152 Carica papaya HOM05D005356 ORTHO05D006596 1.5e-51 207.2 169 63.3
Manes.08G159200 Manihot esculenta HOM05D005356 ORTHO05D006596 9.8e-51 204.5 213 54.0
Gorai.007G246900 Gossypium raimondii HOM05D005356 ORTHO05D006596 6.3e-50 201.8 226 52.2
Potri.013G076100 Populus trichocarpa HOM05D005356 ORTHO05D006596 1.4e-49 200.7 162 64.2
Duzib177G1190 Durio zibethinus HOM05D005356 ORTHO05D006596 2.4e-49 199.9 207 56.0
Gorai.004G255200 Gossypium raimondii HOM05D005356 ORTHO05D006596 2.4e-49 199.9 205 56.1
Gohir.D11G234600 Gossypium hirsutum HOM05D005356 ORTHO05D006596 3.2e-49 199.5 226 51.8
FvH4_7g34281 Fragaria vesca HOM05D005356 ORTHO05D006596 4.1e-49 199.1 166 64.5
arahy.Tifrunner.gnm1.ann1.RW14FX Arachis hypogaea HOM05D005356 ORTHO05D006596 5.4e-49 198.7 165 65.5
Gohir.A08G221634 Gossypium hirsutum HOM05D005356 ORTHO05D006596 1.2e-48 197.6 154 66.9
arahy.Tifrunner.gnm1.ann1.509DQ1 Arachis hypogaea HOM05D005356 ORTHO05D006596 2.0e-48 196.8 144 70.8
Lj3g0010653 Lotus japonicus HOM05D005356 ORTHO05D006596 2.0e-48 196.8 144 68.1
Sabra19G0053800 Salix brachista HOM05D005356 ORTHO05D006596 4.5e-48 195.7 160 64.4
RcHm_v2.0_Chr1g0384641 Rosa chinensis HOM05D005356 ORTHO05D006596 7.8e-48 194.9 144 68.8
Sabra13G0065300 Salix brachista HOM05D005356 ORTHO05D006596 7.8e-48 194.9 160 63.8
Ciclev10031697m.g Citrus clementina HOM05D005356 ORTHO05D006596 1.0e-47 194.5 194 57.2
CsaV3_2G035860 Cucumis sativus L. HOM05D005356 ORTHO05D006596 3.9e-47 192.6 191 55.5
Lalb_Chr01g0000721 Lupinus albus HOM05D005356 ORTHO05D006596 5.0e-47 192.2 161 63.4
Phvul.011G016500 Phaseolus vulgaris HOM05D005356 ORTHO05D006596 5.0e-47 192.2 135 70.4
Prupe.2G329800 Prunus persica HOM05D005356 ORTHO05D006596 6.6e-47 191.8 154 68.2
MELO3C024754.2 Cucumis melo HOM05D005356 ORTHO05D006596 8.6e-47 191.4 160 62.5
Gohir.A11G226000 Gossypium hirsutum HOM05D005356 ORTHO05D006596 1.1e-46 191.0 154 64.3
Sed0017544 Sechium edule HOM05D005356 ORTHO05D006596 1.1e-46 191.0 160 63.1
Sed0019262 Sechium edule HOM05D005356 ORTHO05D006596 1.5e-46 190.7 158 63.9
MD07G1311300 Malus domestica HOM05D005356 ORTHO05D006596 1.9e-46 190.3 157 62.4
Zm00001eb071770 Zea mays HOM05D005356 ORTHO05D006596 1.9e-46 190.3 142 69.7
VMungo0647G2360 Vigna mungo HOM05D005356 ORTHO05D006596 2.5e-46 189.9 149 65.1
TAR629G3426 Trochodendron aralioides HOM05D005356 ORTHO05D006596 3.3e-46 189.5 144 66.0
Os04g0602400 Oryza sativa ssp. japonica HOM05D005356 ORTHO05D006596 7.3e-46 188.3 134 72.4
CiPaw.06G037000 Carya illinoinensis HOM05D005356 ORTHO05D006596 1.2e-45 187.6 169 59.2
FAN03G1362 Fragaria x ananassa HOM05D005356 ORTHO05D006596 1.2e-45 187.6 137 70.1
Glyma.12G013400 Glycine max HOM05D005356 ORTHO05D006596 1.6e-45 187.2 130 73.1
CiPaw.05G210900 Carya illinoinensis HOM05D005356 ORTHO05D006596 2.1e-45 186.8 145 64.8
Lsat_1_v5_gn_9_47941 Lactuca sativa HOM05D005356 ORTHO05D006596 2.1e-45 186.8 210 52.9
Atru.chr12.1818 Acer truncatum HOM05D005356 ORTHO05D006596 3.6e-45 186.0 169 60.4
Nn1g09227 Nelumbo nucifera HOM05D005356 ORTHO05D006596 3.6e-45 186.0 156 62.8
GSVIVG01024263001 Vitis vinifera HOM05D005356 ORTHO05D006596 3.6e-45 186.0 168 59.5
Medtr0172s0020 Medicago truncatula HOM05D005356 ORTHO05D006596 4.7e-45 185.7 143 66.4
Haze_00348 Corylus avellana HOM05D005356 ORTHO05D006596 8.0e-45 184.9 169 58.6
PSO782G1515 Papaver somniferum HOM05D005356 ORTHO05D006596 1.0e-44 184.5 144 63.9
TAR375G1012 Trochodendron aralioides HOM05D005356 ORTHO05D006596 2.3e-44 183.3 144 64.6
PSO063G2098 Papaver somniferum HOM05D005356 ORTHO05D006596 4.0e-44 182.6 198 52.5
CSS0033101 Camellia sinensis var. sinensis HOM05D005356 ORTHO05D006596 5.2e-44 182.2 162 59.3
Peaxi162Scf00263g00323 Petunia axillaris HOM05D005356 ORTHO05D006596 8.9e-44 181.4 165 60.0
ATR0369G003 Amborella trichopoda HOM05D005356 ORTHO05D006596 1.2e-43 181.0 157 63.7
CDE11G1065 Ceratophyllum demersum HOM05D005356 ORTHO05D006596 1.5e-43 180.6 170 57.6
Hund11857 Selenicereus undatus HOM05D005356 ORTHO05D006596 1.5e-43 180.6 167 59.9
Dinv17238 Davidia involucrata HOM05D005356 ORTHO05D006596 2.0e-43 180.3 162 61.1
Oeu030531.2 Olea europaea HOM05D005356 ORTHO05D006596 2.0e-43 180.3 209 51.2
Solyc04g064720.3 Solanum lycopersicum HOM05D005356 ORTHO05D006596 2.0e-43 180.3 163 57.7
Sopen04g026680 Solanum pennellii HOM05D005356 ORTHO05D006596 2.0e-43 180.3 163 57.7
Aqoxy3G04210 Aquilegia oxysepala HOM05D005356 ORTHO05D006596 2.6e-43 179.9 146 65.8
Hma1.2p1_0419F.1_g149580 Hydrangea macrophylla HOM05D005356 ORTHO05D006596 3.4e-43 179.5 144 65.3
MBI04_g30781_MAGBIO Magnolia biondii HOM05D005356 ORTHO05D006596 7.5e-43 178.3 153 64.1
Sopen04g026690 Solanum pennellii HOM05D005356 ORTHO05D006596 7.5e-43 178.3 163 58.3
DCAR_009031 Daucus carota HOM05D005356 ORTHO05D006596 9.8e-43 177.9 165 58.2
Oeu015013.2 Olea europaea HOM05D005356 ORTHO05D006596 9.8e-43 177.9 158 60.1
ECA232G1465 Erigeron canadensis HOM05D005356 ORTHO05D006596 1.3e-42 177.6 147 64.6
PGR008G0003 Punica granatum HOM05D005356 ORTHO05D006596 1.3e-42 177.6 150 64.0
PGR119G0933 Punica granatum HOM05D005356 ORTHO05D006596 1.3e-42 177.6 150 64.0
PGR131G0008 Punica granatum HOM05D005356 ORTHO05D006596 1.3e-42 177.6 150 64.0
CAN.G2009.1 Capsicum annuum HOM05D005356 ORTHO05D006596 1.7e-42 177.2 204 50.0
Nitab4.5_0000299g0040 Nicotiana tabacum HOM05D005356 ORTHO05D006596 1.7e-42 177.2 208 49.5
Nitab4.5_0002990g0020 Nicotiana tabacum HOM05D005356 ORTHO05D006596 1.7e-42 177.2 208 49.5
vmacro22188 Vaccinium macrocarpon HOM05D005356 ORTHO05D006596 1.7e-42 177.2 159 57.9
Aqoxy1G01762 Aquilegia oxysepala HOM05D005356 ORTHO05D006596 2.2e-42 176.8 145 64.1
MSTRG.24194 Avicennia marina HOM05D005356 ORTHO05D006596 2.2e-42 176.8 160 62.5
Sc03g0005650 Simmondsia chinensis HOM05D005356 ORTHO05D006596 2.2e-42 176.8 164 59.1
Nn3g19190 Nelumbo nucifera HOM05D005356 ORTHO05D006596 2.9e-42 176.4 168 56.5
Migut.N03237 Erythranthe guttata HOM05D005356 ORTHO05D006596 4.9e-42 175.6 159 59.7
Rhsim09G0214300 Rhododendron simsii HOM05D005356 ORTHO05D006596 6.4e-42 175.3 162 57.4
TPR.G9827 Trifolium pratense HOM05D005356 ORTHO05D006596 6.4e-42 175.3 161 58.4
Hma1.2p1_0564F.1_g179310 Hydrangea macrophylla HOM05D005356 ORTHO05D006596 8.3e-42 174.9 156 60.3
PGSC0003DMG400024812 Solanum tuberosum HOM05D005356 ORTHO05D006596 8.3e-42 174.9 163 57.7
Cc10_g12920 Coffea canephora HOM05D005356 ORTHO05D006596 1.1e-41 174.5 144 63.9
Lj3A883T53 Lonicera japonica HOM05D005356 ORTHO05D006596 1.1e-41 174.5 168 54.8
Actinidia33804 Actinidia chinensis HOM05D005356 ORTHO05D006596 1.4e-41 174.1 157 59.2
HanXRQChr05g0139001 Helianthus annuus HOM05D005356 ORTHO05D006596 2.4e-41 173.3 157 59.9
unitig_744.g24563 Utricularia gibba HOM05D005356 ORTHO05D006596 3.2e-41 172.9 124 69.4
SalBow6G3313 Salvia bowleyana HOM05D005356 ORTHO05D006596 4.1e-41 172.6 157 58.6
SGA_v2.0_scaffold19G08642 Striga asiatica HOM05D005356 ORTHO05D006596 7.0e-41 171.8 155 56.1
CANSAT21G1742 Cannabis sativa HOM05D005356 ORTHO05D006596 2.0e-40 170.2 149 62.4
Psat0s2502g0200 Pisum sativum HOM05D005356 ORTHO05D006596 3.5e-40 169.5 155 58.7
SalBow7G2700 Salvia bowleyana HOM05D005356 ORTHO05D006596 7.8e-40 168.3 172 52.3
AUR62015463 Chenopodium quinoa HOM05D005356 ORTHO05D006596 1.7e-39 167.2 145 62.1
Migut.C01041 Erythranthe guttata HOM05D005356 ORTHO05D006596 8.6e-39 164.9 168 52.4
EL10Ac3g05893 Beta vulgaris HOM05D005356 ORTHO05D006596 1.1e-38 164.5 209 47.4
AUR62002252 Chenopodium quinoa HOM05D005356 ORTHO05D006596 1.1e-38 164.5 146 61.0
Eucgr.A02993 Eucalyptus grandis HOM05D005356 ORTHO05D006596 1.1e-38 164.5 144 61.8
MSTRG.22381 Avicennia marina HOM05D005356 ORTHO05D006596 1.2e-37 161.0 168 51.8
Pp3c6_18710 Physcomitrium patens HOM05D005356 ORTHO05D006596 2.0e-35 153.7 150 52.7
Manes.09G130400 Manihot esculenta HOM05D005356 ORTHO05D006596 2.4e-33 146.7 153 53.6
Mapoly0051s0014 Marchantia polymorpha HOM05D005356 ORTHO05D006596 1.6e-32 144.1 146 56.2
SEGI_37553 Sequoiadendron giganteum HOM05D005356 ORTHO05D006596 2.1e-32 143.7 191 46.6
MD01G1240200 Malus domestica HOM05D005356 ORTHO05D006596 2.7e-32 143.3 155 52.3
AagrBONN_evm.TU.Sc2ySwM_228.477 Anthoceros agrestis HOM05D005356 ORTHO05D006596 2.3e-31 140.2 124 60.5
SMO012G0030 Selaginella moellendorffii HOM05D005356 ORTHO05D006596 9.5e-30 134.8 125 53.6
Pp3c24_890 Physcomitrium patens HOM05D005356 ORTHO05D006596 6.8e-28 128.6 137 52.6
Carub.0006s1575 Capsella rubella HOM05D005356 ORTHO05D006596 1.4e-25 120.9 79 79.7
SMO118G0252 Selaginella moellendorffii HOM05D005356 ORTHO05D006596 4.1e-25 119.4 116 56.0
Gohir.D08G239900 Gossypium hirsutum HOM05D005356 ORTHO05D006596 5.6e-22 109.0 86 68.6
ClCG02G007870 Citrullus lanatus HOM05D005356 ORTHO05D006596 1.5e-19 100.9 75 70.7
Ca_19620_v3 Cicer arietinum L. HOM05D005356 ORTHO05D006596 2.6e-19 100.1 76 68.4
CBR_g17688 Chara braunii HOM05D005356 ORTHO05D006596 4.2e-17 92.8 145 36.6
Zm00001eb003380 Zea mays HOM05D001522 ORTHO05D001547 4.2e-17 92.8 80 63.8
MCO10G093 Micromonas commoda HOM05D005356 ORTHO05D006596 1.3e-15 87.8 116 39.7
Cre12.g486600 Chlamydomonas reinhardtii HOM05D005356 ORTHO05D006596 2.5e-14 83.6 111 36.0
PRCOL_00004977 Prasinoderma coloniale HOM05D005356 ORTHO05D006596 4.8e-13 79.3 149 30.9
HPP92_022763 Vanilla planifolia HOM05D005356 ORTHO05D006596 1.4e-12 77.8 137 42.3


User provided reference genes

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