Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT5G17165 Arabidopsis thaliana HOM05D003592 ORTHO05D004208 3.6e-61 238.0 117 100.0
AL6G28210 Arabidopsis lyrata HOM05D003592 ORTHO05D004208 8.0e-53 210.3 121 85.1
CARHR196060 Cardamine hirsuta HOM05D003592 ORTHO05D004208 9.8e-43 176.8 123 73.2
BcaB08g36801 Brassica carinata HOM05D003592 ORTHO05D004208 3.7e-42 174.9 122 74.6
BolC9t58839H Brassica oleracea HOM05D003592 ORTHO05D004208 1.8e-41 172.6 129 73.6
Sp6g27060 Schrenkiella parvula HOM05D003592 ORTHO05D004208 2.4e-41 172.2 124 74.2
A10p22230 Brassica napus HOM05D003592 ORTHO05D004208 7.0e-41 170.6 129 72.9
BraA10t44282Z Brassica rapa HOM05D003592 ORTHO05D004208 7.0e-41 170.6 129 72.9
BcaC04g18828 Brassica carinata HOM05D003592 ORTHO05D004208 7.7e-40 167.2 129 72.1
Carub.0006s1535 Capsella rubella HOM05D003592 ORTHO05D004208 1.0e-39 166.8 118 72.9
Thhalv10017419m.g Eutrema salsugineum HOM05D003592 ORTHO05D004208 3.1e-33 145.2 125 64.0
C09p60040 Brassica napus HOM05D003592 ORTHO05D004208 5.4e-33 144.4 115 70.4
Aa31LG5G13630 Aethionema arabicum HOM05D003592 ORTHO05D004208 2.7e-32 142.1 124 60.5
Sp3g02190 Schrenkiella parvula HOM05D003592 ORTHO05D004208 1.5e-30 136.3 122 59.0
BcaB04g19374 Brassica carinata HOM05D003592 ORTHO05D004208 2.5e-30 135.6 118 59.3
Carub.0003s0230 Capsella rubella HOM05D003592 ORTHO05D004208 2.5e-30 135.6 116 59.5
BolC5t35035H Brassica oleracea HOM05D003592 ORTHO05D004208 5.6e-30 134.4 119 59.7
C03p40480 Brassica napus HOM05D003592 ORTHO05D004208 9.5e-30 133.7 118 56.8
BolC3t16311H Brassica oleracea HOM05D003592 ORTHO05D004208 9.5e-30 133.7 118 56.8
THA.LOC104827220 Tarenaya hassleriana HOM05D003592 ORTHO05D004208 9.5e-30 133.7 129 59.7
A03p33220 Brassica napus HOM05D003592 ORTHO05D004208 1.2e-29 133.3 118 56.8
AL3G12760 Arabidopsis lyrata HOM05D003592 ORTHO05D004208 1.6e-29 132.9 121 61.2
BraA03t12494Z Brassica rapa HOM05D003592 ORTHO05D004208 1.6e-29 132.9 118 55.9
A05p44040 Brassica napus HOM05D003592 ORTHO05D004208 2.1e-29 132.5 119 57.1
BraSC90t46707Z Brassica rapa HOM05D003592 ORTHO05D004208 2.1e-29 132.5 119 57.1
BcaC05g30524 Brassica carinata HOM05D003592 ORTHO05D004208 2.8e-29 132.1 121 57.9
BcaC01g04411 Brassica carinata HOM05D003592 ORTHO05D004208 6.1e-29 131.0 118 57.6
AT3G03150 Arabidopsis thaliana HOM05D003592 ORTHO05D004208 1.4e-28 129.8 117 59.8
C05p63660 Brassica napus HOM05D003592 ORTHO05D004208 1.4e-28 129.8 120 59.2
TWI32G0722 Tripterygium wilfordii HOM05D003592 ORTHO05D004208 4.0e-28 128.3 118 54.2
CARHR077170 Cardamine hirsuta HOM05D003592 ORTHO05D004208 1.2e-27 126.7 124 54.8
Thhalv10021768m.g Eutrema salsugineum HOM05D003592 ORTHO05D004208 2.0e-27 125.9 125 55.2
Potri.013G081700 Populus trichocarpa HOM05D003592 ORTHO05D004208 1.7e-26 122.9 125 51.2
COL.COLO4_08909 Corchorus olitorius HOM05D003592 ORTHO05D004208 1.2e-24 116.7 129 48.1
Ciclev10013115m.g Citrus clementina HOM05D003592 ORTHO05D004208 2.0e-24 115.9 126 50.0
TWI34G2026 Tripterygium wilfordii HOM05D003592 ORTHO05D004208 3.5e-24 115.2 125 48.8
Sabra13G0071400 Salix brachista HOM05D003592 ORTHO05D004208 7.8e-24 114.0 124 49.2
Atru.chr12.2033 Acer truncatum HOM05D003592 ORTHO05D004208 1.3e-23 113.2 119 47.1
Thecc.05G207700 Theobroma cacao HOM05D003592 ORTHO05D004208 1.7e-23 112.8 87 59.8
MD07G1305300 Malus domestica HOM05D003592 ORTHO05D004208 3.0e-23 112.1 120 45.8
GSVIVG01024455001 Vitis vinifera HOM05D003592 ORTHO05D004208 1.9e-22 109.4 119 49.6
Gohir.A02G139000 Gossypium hirsutum HOM05D003592 ORTHO05D004208 2.5e-22 109.0 128 45.3
Gohir.D03G049600 Gossypium hirsutum HOM05D003592 ORTHO05D004208 2.5e-22 109.0 128 45.3
Gorai.003G051000 Gossypium raimondii HOM05D003592 ORTHO05D004208 2.5e-22 109.0 128 45.3
Prupe.2G323400 Prunus persica HOM05D003592 ORTHO05D004208 7.3e-22 107.5 120 46.7
Duzib177G0010 Durio zibethinus HOM05D003592 ORTHO05D004208 9.5e-22 107.1 93 54.8
Duzib106G0206 Durio zibethinus HOM05D003592 ORTHO05D004208 1.1e-20 103.6 94 51.1
MD01G1233000 Malus domestica HOM05D003592 ORTHO05D004208 1.4e-20 103.2 89 55.1
Cpa.g.sc39.41 Carica papaya HOM05D003592 ORTHO05D004208 1.8e-20 102.8 95 51.6
PGR042G3489 Punica granatum HOM05D003592 ORTHO05D004208 1.8e-20 102.8 93 53.8
Manes.09G123900 Manihot esculenta HOM05D003592 ORTHO05D004208 2.3e-20 102.4 128 46.9
Duzib128G1398 Durio zibethinus HOM05D003592 ORTHO05D004208 3.1e-20 102.1 109 47.7
RcHm_v2.0_Chr1g0383761 Rosa chinensis HOM05D003592 ORTHO05D004208 6.8e-20 100.9 128 45.3
Manes.08G164900 Manihot esculenta HOM05D003592 ORTHO05D004208 1.2e-19 100.1 87 55.2
FAN10G0119 Fragaria x ananassa HOM05D003592 ORTHO05D004208 1.5e-19 99.8 127 44.9
FAN10G2200 Fragaria x ananassa HOM05D003592 ORTHO05D004208 1.5e-19 99.8 127 44.9
FAN01G2998 Fragaria x ananassa HOM05D003592 ORTHO05D004208 2.6e-19 99.0 128 45.3
FAN03G1827 Fragaria x ananassa HOM05D003592 ORTHO05D004208 2.6e-19 99.0 86 54.7
FvH4_7g33540 Fragaria vesca HOM05D003592 ORTHO05D004208 4.4e-19 98.2 127 44.9
MBI04_g21153_MAGBIO Magnolia biondii HOM05D003592 ORTHO05D004208 4.4e-19 98.2 91 52.7
CSS0031198 Camellia sinensis var. sinensis HOM05D003592 ORTHO05D004208 5.8e-19 97.8 119 45.4
ClCG07G017260 Citrullus lanatus HOM05D003592 ORTHO05D004208 7.5e-19 97.4 87 56.3
CsaV3_4G004470 Cucumis sativus L. HOM05D003592 ORTHO05D004208 7.5e-19 97.4 90 55.6
Eucgr.L03660 Eucalyptus grandis HOM05D003592 ORTHO05D004208 9.8e-19 97.1 124 47.6
MBI04_g29825_MAGBIO Magnolia biondii HOM05D000463 ORTHO05D013433 1.3e-18 96.7 84 56.0
Actinidia34296 Actinidia chinensis HOM05D003592 ORTHO05D004208 3.7e-18 95.1 121 47.9
MELO3C017620.2 Cucumis melo HOM05D003592 ORTHO05D004208 3.7e-18 95.1 88 55.7
Sc19g0000280 Simmondsia chinensis HOM05D003592 ORTHO05D004208 3.7e-18 95.1 123 45.5
vmacro10180 Vaccinium macrocarpon HOM05D003592 ORTHO05D004208 3.7e-18 95.1 86 54.7
Actinidia08730 Actinidia chinensis HOM05D003592 ORTHO05D004208 4.9e-18 94.7 118 47.5
Eucgr.A02956 Eucalyptus grandis HOM05D003592 ORTHO05D004208 4.9e-18 94.7 89 55.1
Eucgr.A02954 Eucalyptus grandis HOM05D003592 ORTHO05D004208 6.4e-18 94.4 125 44.0
Rhsim09G0211800 Rhododendron simsii HOM05D003592 ORTHO05D004208 6.4e-18 94.4 81 56.8
CiPaw.05G236400 Carya illinoinensis HOM05D003592 ORTHO05D004208 8.3e-18 94.0 129 45.0
Sed0022386 Sechium edule HOM05D003592 ORTHO05D004208 8.3e-18 94.0 126 45.2
CANSAT21G0974 Cannabis sativa HOM05D003592 ORTHO05D004208 1.1e-17 93.6 86 54.7
Dinv29178 Davidia involucrata HOM05D003592 ORTHO05D004208 1.1e-17 93.6 116 43.1
QL09p026459 Quercus lobata HOM05D003592 ORTHO05D004208 1.1e-17 93.6 123 47.2
Haze_00584 Corylus avellana HOM05D003592 ORTHO05D004208 1.9e-17 92.8 121 43.8
Hma1.2p1_1235F.1_g269160 Hydrangea macrophylla HOM05D003592 ORTHO05D004208 1.9e-17 92.8 121 43.8
Nitab4.5_0000021g0300 Nicotiana tabacum HOM05D003592 ORTHO05D004208 1.9e-17 92.8 124 45.2
vmacro06490 Vaccinium macrocarpon HOM05D003592 ORTHO05D004208 1.9e-17 92.8 126 44.4
Cfa015910 Carpinus fangiana HOM05D003592 ORTHO05D004208 2.4e-17 92.4 87 52.9
Migut.F00955 Erythranthe guttata HOM05D003592 ORTHO05D004208 2.4e-17 92.4 120 45.8
PGSC0003DMG400026933 Solanum tuberosum HOM05D003592 ORTHO05D004208 2.4e-17 92.4 85 55.3
CiPaw.06G020500 Carya illinoinensis HOM05D003592 ORTHO05D004208 3.2e-17 92.0 92 52.2
CSS0018534 Camellia sinensis var. sinensis HOM05D003592 ORTHO05D004208 4.1e-17 91.7 120 44.2
TAR629G1675 Trochodendron aralioides HOM05D003592 ORTHO05D004208 4.1e-17 91.7 93 49.5
Sed0007086 Sechium edule HOM05D003592 ORTHO05D004208 5.4e-17 91.3 125 43.2
Aqoxy161s001 Aquilegia oxysepala HOM05D003592 ORTHO05D004208 7.0e-17 90.9 126 40.5
Aqoxy161s002 Aquilegia oxysepala HOM05D003592 ORTHO05D004208 7.0e-17 90.9 126 40.5
Aqoxy3G02065 Aquilegia oxysepala HOM05D003592 ORTHO05D004208 7.0e-17 90.9 126 40.5
Aqoxy3G02066 Aquilegia oxysepala HOM05D003592 ORTHO05D004208 7.0e-17 90.9 126 40.5
Nitab4.5_0002302g0040 Nicotiana tabacum HOM05D003592 ORTHO05D004208 7.0e-17 90.9 125 40.8
Sc13g0010720 Simmondsia chinensis HOM05D003592 ORTHO05D004208 7.0e-17 90.9 83 56.6
ATR0829G020 Amborella trichopoda HOM05D003592 ORTHO05D004208 9.2e-17 90.5 90 52.2
Peaxi162Scf01650g00057 Petunia axillaris HOM05D003592 ORTHO05D004208 1.2e-16 90.1 117 45.3
SalBow2G2852 Salvia bowleyana HOM05D003592 ORTHO05D004208 1.2e-16 90.1 104 47.1
Rhsim03G0219900 Rhododendron simsii HOM05D003592 ORTHO05D004208 1.6e-16 89.7 127 42.5
Ca_24466_v3 Cicer arietinum L. HOM05D003592 ORTHO05D004208 2.1e-16 89.4 89 52.8
Actinidia18695 Actinidia chinensis HOM05D003592 ORTHO05D004208 2.7e-16 89.0 121 43.8
AUR62005925 Chenopodium quinoa HOM05D003592 ORTHO05D004208 2.7e-16 89.0 126 42.1
ClCG01G004940 Citrullus lanatus HOM05D003592 ORTHO05D004208 3.5e-16 88.6 90 47.8
AUR62018884 Chenopodium quinoa HOM05D003592 ORTHO05D004208 4.6e-16 88.2 89 50.6
CsaV3_5G005170 Cucumis sativus L. HOM05D003592 ORTHO05D004208 6.0e-16 87.8 88 51.1
Migut.F00107 Erythranthe guttata HOM05D003592 ORTHO05D004208 6.0e-16 87.8 111 42.3
Glyma.11G013200 Glycine max HOM05D003592 ORTHO05D004208 6.0e-16 87.8 116 42.2
Oeu038117.1 Olea europaea HOM05D003592 ORTHO05D004208 6.0e-16 87.8 88 52.3
Oeu063742.2 Olea europaea HOM05D003592 ORTHO05D004208 6.0e-16 87.8 83 55.4
TPR.G37953 Trifolium pratense HOM05D003592 ORTHO05D004208 6.0e-16 87.8 121 43.0
MSTRG.8553 Avicennia marina HOM05D003592 ORTHO05D004208 7.8e-16 87.4 111 45.9
CDE01G0008 Ceratophyllum demersum HOM05D003592 ORTHO05D004208 7.8e-16 87.4 86 51.2
Lsat_1_v5_gn_0_9420 Lactuca sativa HOM05D003592 ORTHO05D004208 7.8e-16 87.4 117 42.7
Oeu055446.1 Olea europaea HOM05D003592 ORTHO05D004208 7.8e-16 87.4 83 51.8
Sed0014997 Sechium edule HOM05D003592 ORTHO05D004208 1.0e-15 87.0 86 47.7
Solyc03g096840.4 Solanum lycopersicum HOM05D003592 ORTHO05D004208 1.0e-15 87.0 119 42.9
MELO3C005442.2 Cucumis melo HOM05D003592 ORTHO05D004208 1.3e-15 86.7 88 52.3
LjContig00222g0008170 Lotus japonicus HOM05D003592 ORTHO05D004208 1.7e-15 86.3 126 42.9
PGSC0003DMG400000541 Solanum tuberosum HOM05D003592 ORTHO05D004208 1.7e-15 86.3 120 41.7
Actinidia28268 Actinidia chinensis HOM05D003592 ORTHO05D004208 3.0e-15 85.5 121 43.8
Hma1.2p1_0758F.1_g213540 Hydrangea macrophylla HOM05D003592 ORTHO05D004208 3.0e-15 85.5 116 43.1
Medtr5g008210 Medicago truncatula HOM05D003592 ORTHO05D004208 3.9e-15 85.1 133 39.8
Sopen03g027580 Solanum pennellii HOM05D003592 ORTHO05D004208 3.9e-15 85.1 119 42.0
Hund21085 Selenicereus undatus HOM05D003592 ORTHO05D004208 5.1e-15 84.7 97 48.5
MSTRG.14 Avicennia marina HOM05D003592 ORTHO05D004208 6.6e-15 84.3 82 52.4
SGA_v2.0_scaffold18G08501 Striga asiatica HOM05D003592 ORTHO05D004208 6.6e-15 84.3 112 42.0
Oeu061060.1 Olea europaea HOM05D003592 ORTHO05D004208 8.6e-15 84.0 93 50.5
MSTRG.26939 Avicennia marina HOM05D003592 ORTHO05D004208 1.1e-14 83.6 108 44.4
DCAR_010550 Daucus carota HOM05D003592 ORTHO05D004208 1.1e-14 83.6 114 39.5
Psat2g187520 Pisum sativum HOM05D003592 ORTHO05D004208 1.1e-14 83.6 126 40.5
AUR62028136 Chenopodium quinoa HOM05D003592 ORTHO05D004208 1.5e-14 83.2 82 51.2
Dinv17270 Davidia involucrata HOM05D003592 ORTHO05D004208 1.5e-14 83.2 126 39.7
arahy.Tifrunner.gnm1.ann1.F45BIC Arachis hypogaea HOM05D003592 ORTHO05D004208 1.9e-14 82.8 119 38.7
arahy.Tifrunner.gnm1.ann1.I6057L Arachis hypogaea HOM05D003592 ORTHO05D004208 1.9e-14 82.8 118 39.0
EL10Ac3g05109 Beta vulgaris HOM05D003592 ORTHO05D004208 1.9e-14 82.8 91 48.4
VMungo1215G0435 Vigna mungo HOM05D003592 ORTHO05D004208 1.9e-14 82.8 85 50.6
Ah.13g071180 Amaranthus hybridus HOM05D003592 ORTHO05D004208 2.5e-14 82.4 89 49.4
Cc02_g00450 Coffea canephora HOM05D003592 ORTHO05D004208 3.3e-14 82.0 85 50.6
Cc05_g00720 Coffea canephora HOM05D003592 ORTHO05D004208 3.3e-14 82.0 85 50.6
CAN.G303.68 Capsicum annuum HOM05D003592 ORTHO05D004208 4.3e-14 81.6 117 41.0
Peaxi162Scf00815g00250 Petunia axillaris HOM05D003592 ORTHO05D004208 4.3e-14 81.6 91 48.4
Glyma.01G230200 Glycine max HOM05D003592 ORTHO05D004208 7.3e-14 80.9 134 36.6
Phvul.002G036900 Phaseolus vulgaris HOM05D003592 ORTHO05D004208 7.3e-14 80.9 126 39.7
Ah.04g157330 Amaranthus hybridus HOM05D003592 ORTHO05D004208 9.5e-14 80.5 94 45.7
PGR142G3032 Punica granatum HOM05D003592 ORTHO05D004208 9.5e-14 80.5 98 45.9
Peaxi162Scf00133g00111 Petunia axillaris HOM05D003592 ORTHO05D004208 1.6e-13 79.7 128 39.8
unitig_62.g23842 Utricularia gibba HOM05D003592 ORTHO05D004208 2.1e-13 79.3 82 53.7
Eucgr.K00100 Eucalyptus grandis HOM05D003592 ORTHO05D004208 3.6e-13 78.6 92 42.4
CDE12G0763 Ceratophyllum demersum HOM05D003592 ORTHO05D004208 6.2e-13 77.8 110 40.9
Nitab4.5_0006270g0010 Nicotiana tabacum HOM05D003592 ORTHO05D004208 6.2e-13 77.8 79 55.7
Zm00001eb430170 Zea mays HOM05D003592 ORTHO05D004208 6.2e-13 77.8 123 39.8
Os04g0598000 Oryza sativa ssp. japonica HOM05D003592 ORTHO05D004208 8.1e-13 77.4 119 41.2
Sopen06g029220 Solanum pennellii HOM05D003592 ORTHO05D004208 8.1e-13 77.4 94 47.9
Solyc06g072840.3 Solanum lycopersicum HOM05D003592 ORTHO05D004208 1.1e-12 77.0 93 50.5
HPP92_020881 Vanilla planifolia HOM05D003592 ORTHO05D004208 1.1e-12 77.0 109 43.1
HPP92_020885 Vanilla planifolia HOM05D003592 ORTHO05D004208 1.4e-12 76.6 109 40.4
Nitab4.5_0000115g0310 Nicotiana tabacum HOM05D003592 ORTHO05D004208 1.8e-12 76.3 83 53.0
HanXRQChr02g0041191 Helianthus annuus HOM05D003592 ORTHO05D004208 5.2e-12 74.7 113 38.1
Peaxi162Scf00815g00235 Petunia axillaris HOM05D003592 ORTHO05D004208 6.8e-12 74.3 125 44.0
SGA_v2.0_scaffold165G38224 Striga asiatica HOM05D003592 ORTHO05D004208 6.8e-12 74.3 108 42.6
Hund09766 Selenicereus undatus HOM05D003592 ORTHO05D004208 1.5e-11 73.2 87 46.0
Sopen06g029230 Solanum pennellii HOM05D003592 ORTHO05D004208 2.6e-11 72.4 83 53.0
PGSC0003DMG400027031 Solanum tuberosum HOM05D003592 ORTHO05D004208 2.6e-11 72.4 83 54.2
TAR375G0874 Trochodendron aralioides HOM05D003592 ORTHO05D004208 2.6e-11 72.4 82 45.1
Nitab4.5_0003012g0010 Nicotiana tabacum HOM05D003592 ORTHO05D004208 5.8e-11 71.2 83 50.6
SEGI_37277 Sequoiadendron giganteum HOM05D003592 ORTHO05D004208 5.8e-11 71.2 86 40.7
Solyc06g072845.1 Solanum lycopersicum HOM05D003592 ORTHO05D004208 5.8e-11 71.2 80 52.5
HanXRQChr09g0257211 Helianthus annuus HOM05D003592 ORTHO05D004208 7.5e-11 70.9 84 44.0
Nn1g02028 Nelumbo nucifera HOM05D003592 ORTHO05D004208 7.5e-11 70.9 47 61.7
unitig_0.g1634 Utricularia gibba HOM05D003592 ORTHO05D004208 9.9e-11 70.5 111 41.4
PSO063G2386 Papaver somniferum HOM05D003592 ORTHO05D004208 1.3e-10 70.1 82 45.1
Nn3g19269 Nelumbo nucifera HOM05D003592 ORTHO05D004208 1.7e-10 69.7 90 41.1
SEGI_20020 Sequoiadendron giganteum HOM05D003592 ORTHO05D004208 1.7e-10 69.7 93 41.9
Sed0022343 Sechium edule HOM05D003592 ORTHO05D004208 2.9e-10 68.9 74 50.0
CDE11G0498 Ceratophyllum demersum HOM05D003592 ORTHO05D004208 8.3e-10 67.4 91 39.6
Nitab4.5_0000115g0330 Nicotiana tabacum HOM05D003592 ORTHO05D004208 1.1e-09 67.0 80 51.2
PSO170G2965 Papaver somniferum HOM05D003592 ORTHO05D004208 3.2e-09 65.5 82 42.7
ECA232G0247 Erigeron canadensis HOM05D003592 ORTHO05D004208 4.1e-09 65.1 92 41.3
SEGI_00089 Sequoiadendron giganteum HOM05D003592 ORTHO05D004208 7.1e-09 64.3 79 44.3
Actinidia08732 Actinidia chinensis HOM05D003592 ORTHO05D004208 1.2e-08 63.5 41 61.0
HPP92_014744 Vanilla planifolia HOM05D003592 ORTHO05D004208 2.1e-08 62.8 107 37.4
Ah.13g071140 Amaranthus hybridus HOM05D003592 ORTHO05D004208 4.6e-08 61.6 101 40.6
HanXRQChr05g0137871 Helianthus annuus HOM05D003592 ORTHO05D029303 4.6e-08 61.6 113 38.1
HPP92_014706 Vanilla planifolia HOM05D003592 ORTHO05D004208 4.6e-08 61.6 90 40.0
CDE02G0247 Ceratophyllum demersum HOM05D003592 ORTHO05D004208 6.0e-08 61.2 89 37.1
SEGI_16015 Sequoiadendron giganteum HOM05D003592 ORTHO05D004208 3.9e-07 58.5 81 35.8


User provided reference genes

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