Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT5G17150 Arabidopsis thaliana HOM05D004201 ORTHO05D009648 3.8e-111 404.8 203 100.0
AT5G17120 Arabidopsis thaliana HOM05D004201 ORTHO05D009648 8.6e-87 323.9 208 81.2
BcaB03g13238 Brassica carinata HOM05D004201 ORTHO05D009648 3.2e-57 225.7 185 65.4
BraA08t35247Z Brassica rapa HOM05D004201 ORTHO05D009648 2.7e-56 222.6 186 63.4
BolC8t49120H Brassica oleracea HOM05D004201 ORTHO05D009648 4.6e-56 221.9 207 60.4
A08p33280 Brassica napus HOM05D004201 ORTHO05D009648 1.7e-55 219.9 208 59.1
BcaC06g31919 Brassica carinata HOM05D004201 ORTHO05D009648 3.9e-55 218.8 158 69.6
BcaC07g38685 Brassica carinata HOM05D004201 ORTHO05D009648 5.1e-55 218.4 187 63.1
C08p14870 Brassica napus HOM05D004201 ORTHO05D009648 3.3e-54 215.7 187 62.6
Carub.0006s1527 Capsella rubella HOM05D004201 ORTHO05D009648 9.6e-54 214.2 175 64.6
C09p60060 Brassica napus HOM05D004201 ORTHO05D009648 1.6e-53 213.4 186 59.7
BolC9t58841H Brassica oleracea HOM05D004201 ORTHO05D009648 1.6e-53 213.4 186 59.7
Sp6g27080 Schrenkiella parvula HOM05D004201 ORTHO05D009648 4.8e-53 211.8 198 59.6
Carub.0006s1529 Capsella rubella HOM05D004201 ORTHO05D009648 3.1e-52 209.1 196 57.7
Carub.0006s1532 Capsella rubella HOM05D004201 ORTHO05D009648 1.7e-50 203.4 154 65.6
Carub.0006s1528 Capsella rubella HOM05D004201 ORTHO05D009648 1.4e-49 200.3 153 64.1
AL6G28190 Arabidopsis lyrata HOM05D004201 ORTHO05D009648 5.4e-49 198.4 122 82.8
CARHR196090 Cardamine hirsuta HOM05D004201 ORTHO05D009648 1.7e-47 193.4 159 61.0
AL6G28160 Arabidopsis lyrata HOM05D004201 ORTHO05D009648 1.6e-45 186.8 141 66.7
A03p08190 Brassica napus HOM05D004201 ORTHO05D009648 1.8e-44 183.3 161 55.3
BcaB01g05219 Brassica carinata HOM05D004201 ORTHO05D009648 5.3e-44 181.8 174 52.3
BcaB01g04954 Brassica carinata HOM05D004201 ORTHO05D009648 6.9e-44 181.4 212 48.1
C03p09490 Brassica napus HOM05D004201 ORTHO05D009648 1.2e-43 180.6 174 51.7
AT5G17090 Arabidopsis thaliana HOM05D004201 ORTHO05D009648 3.4e-43 179.1 157 58.0
AL6G28110 Arabidopsis lyrata HOM05D004201 ORTHO05D009648 2.2e-42 176.4 216 46.3
BcaB01g05222 Brassica carinata HOM05D004201 ORTHO05D009648 3.8e-42 175.6 161 52.8
BcaB01g05226 Brassica carinata HOM05D004201 ORTHO05D009648 4.9e-42 175.3 161 52.8
Carub.0006s1530 Capsella rubella HOM05D004201 ORTHO05D009648 4.9e-42 175.3 172 53.5
A03p08180 Brassica napus HOM05D004201 ORTHO05D009648 1.1e-41 174.1 161 51.6
BcaB01g05230 Brassica carinata HOM05D004201 ORTHO05D009648 3.2e-41 172.6 157 53.5
BolC3t13435H Brassica oleracea HOM05D004201 ORTHO05D009648 4.2e-41 172.2 170 50.0
A03p08140 Brassica napus HOM05D004201 ORTHO05D009648 5.5e-41 171.8 157 54.1
BolC3t13445H Brassica oleracea HOM05D004201 ORTHO05D009648 9.3e-41 171.0 166 52.4
C03p09410 Brassica napus HOM05D004201 ORTHO05D009648 1.2e-40 170.6 157 52.2
Carub.0006s1531 Capsella rubella HOM05D004201 ORTHO05D009648 3.5e-40 169.1 172 51.7
BcaB01g05228 Brassica carinata HOM05D004201 ORTHO05D009648 4.6e-40 168.7 163 51.5
BcaB01g05224 Brassica carinata HOM05D004201 ORTHO05D009648 1.0e-39 167.5 213 42.7
BcaB01g04951 Brassica carinata HOM05D004201 ORTHO05D009648 2.3e-39 166.4 160 49.4
BcaB01g05229 Brassica carinata HOM05D004201 ORTHO05D009648 2.3e-39 166.4 168 52.4
BcaB01g05218 Brassica carinata HOM05D004201 ORTHO05D009648 3.9e-39 165.6 156 55.1
BcaB01g05225 Brassica carinata HOM05D004201 ORTHO05D009648 5.1e-39 165.2 162 51.2
A10p22250 Brassica napus HOM05D004201 ORTHO05D009648 6.7e-39 164.9 156 57.1
AT5G17110 Arabidopsis thaliana HOM05D004201 ORTHO05D009648 1.1e-38 164.1 203 45.3
BraA10t44284Z Brassica rapa HOM05D004201 ORTHO05D009648 1.1e-38 164.1 156 57.1
A03p08170 Brassica napus HOM05D004201 ORTHO05D009648 1.5e-38 163.7 163 50.9
BraA03t10141Z Brassica rapa HOM05D004201 ORTHO05D009648 1.9e-38 163.3 162 50.0
AL6G28150 Arabidopsis lyrata HOM05D004201 ORTHO05D009648 2.5e-38 162.9 202 44.1
BcaB01g04956 Brassica carinata HOM05D004201 ORTHO05D009648 4.3e-38 162.2 163 54.6
BraA03t10139Z Brassica rapa HOM05D004201 ORTHO05D009648 4.3e-38 162.2 166 50.6
Aa31LG11G12620 Aethionema arabicum HOM05D004201 ORTHO05D009648 7.4e-38 161.4 212 46.2
BcaB01g04958 Brassica carinata HOM05D004201 ORTHO05D009648 1.6e-37 160.2 162 50.0
C03p09500 Brassica napus HOM05D004201 ORTHO05D009648 1.6e-37 160.2 163 53.4
BcaB01g04953 Brassica carinata HOM05D004201 ORTHO05D009648 2.1e-37 159.8 163 50.3
BcaB01g05220 Brassica carinata HOM05D004201 ORTHO05D009648 4.8e-37 158.7 162 49.4
BcaB01g05223 Brassica carinata HOM05D004201 ORTHO05D009648 4.8e-37 158.7 162 49.4
AT5G17100 Arabidopsis thaliana HOM05D004201 ORTHO05D009648 1.1e-36 157.5 199 44.7
C03p09420 Brassica napus HOM05D004201 ORTHO05D009648 2.4e-36 156.4 161 52.2
BcaB01g04955 Brassica carinata HOM05D004201 ORTHO05D009648 3.1e-36 156.0 161 50.9
Aa31LG11G12560 Aethionema arabicum HOM05D004201 ORTHO05D009648 1.5e-35 153.7 201 42.8
A03p08160 Brassica napus HOM05D004201 ORTHO05D009648 5.8e-35 151.8 161 50.9
Thhalv10015849m.g Eutrema salsugineum HOM05D004201 ORTHO05D009648 5.8e-35 151.8 177 47.5
BcaB01g05221 Brassica carinata HOM05D004201 ORTHO05D009648 1.0e-34 151.0 151 51.0
Aa31LG11G12490 Aethionema arabicum HOM05D004201 ORTHO05D009648 1.9e-33 146.7 220 43.6
Aa31LG11G12500 Aethionema arabicum HOM05D004201 ORTHO05D009648 1.9e-33 146.7 181 44.8
Aa31LG11G12790 Aethionema arabicum HOM05D004201 ORTHO05D009648 4.6e-32 142.1 217 42.9
Aa31LG11G12540 Aethionema arabicum HOM05D004201 ORTHO05D009648 2.3e-31 139.8 152 47.4
Aa31LG11G12840 Aethionema arabicum HOM05D004201 ORTHO05D009648 3.0e-31 139.4 194 37.1
Aa31LG11G12510 Aethionema arabicum HOM05D004201 ORTHO05D009648 6.7e-31 138.3 152 46.1
A03p08200 Brassica napus HOM05D004201 ORTHO05D009648 1.9e-30 136.7 161 46.0
Aa31LG11G12550 Aethionema arabicum HOM05D004201 ORTHO05D009648 1.8e-28 130.2 192 39.6
Aa31LG11G12800 Aethionema arabicum HOM05D004201 ORTHO05D009648 6.5e-26 121.7 153 42.5
BcaC01g06645 Brassica carinata HOM05D004201 ORTHO05D009648 1.9e-25 120.2 159 47.2
Aa31LG11G12820 Aethionema arabicum HOM05D004201 ORTHO05D009648 4.2e-25 119.0 184 38.6
Aa31LG11G12830 Aethionema arabicum HOM05D004201 ORTHO05D009648 5.5e-25 118.6 202 37.1
A03p20510 Brassica napus HOM05D004201 ORTHO05D009648 2.7e-24 116.3 162 46.3
AL6G49220 Arabidopsis lyrata HOM05D004201 ORTHO05D009648 1.3e-23 114.0 212 40.1
Carub.0006s3347 Capsella rubella HOM05D004201 ORTHO05D009648 1.8e-23 113.6 218 40.4
BcaB08g36118 Brassica carinata HOM05D004201 ORTHO05D009648 2.3e-23 113.2 153 46.4
AL3G16360 Arabidopsis lyrata HOM05D004201 ORTHO05D031360 3.9e-23 112.5 158 45.6
AL3G16370 Arabidopsis lyrata HOM05D004201 ORTHO05D011677 8.7e-23 111.3 159 42.8
Carub.0006s3349 Capsella rubella HOM05D004201 ORTHO05D009648 8.7e-23 111.3 163 44.8
AL6G49230 Arabidopsis lyrata HOM05D004201 ORTHO05D009648 1.3e-21 107.5 146 47.3
Carub.0006s3348 Capsella rubella HOM05D004201 ORTHO05D009648 1.3e-21 107.5 216 40.3
Aa31LG11G12530 Aethionema arabicum HOM05D004201 ORTHO05D009648 3.7e-21 105.9 190 34.7
AL3G16040 Arabidopsis lyrata HOM05D004201 ORTHO05D011677 3.7e-21 105.9 213 35.2
Carub.0006s3346 Capsella rubella HOM05D004201 ORTHO05D009648 3.1e-20 102.8 161 44.7
C09p02940 Brassica napus HOM05D004201 ORTHO05D009648 3.4e-19 99.4 210 38.1
BcaB01g05217 Brassica carinata HOM05D004201 ORTHO05D009648 5.0e-18 95.5 210 38.6
Thhalv10021511m.g Eutrema salsugineum HOM05D004201 ORTHO05D011677 5.0e-18 95.5 160 39.4
THA.LOC104809406 Tarenaya hassleriana HOM05D004201 ORTHO05D012052 6.5e-18 95.1 154 40.3
Thhalv10008370m.g Eutrema salsugineum HOM05D004201 ORTHO05D012052 2.5e-17 93.2 187 37.4
BraA09t35929Z Brassica rapa HOM05D004201 ORTHO05D009648 3.2e-17 92.8 157 42.0
THA.LOC104809407 Tarenaya hassleriana HOM05D004201 ORTHO05D012052 3.2e-17 92.8 154 39.6
AL304U10030 Arabidopsis lyrata HOM05D004201 ORTHO05D011677 5.5e-17 92.0 160 37.5
AL8G28550 Arabidopsis lyrata HOM05D004201 ORTHO05D011677 2.1e-16 90.1 197 36.5
BcaB08g36116 Brassica carinata HOM05D004201 ORTHO05D009648 2.1e-16 90.1 163 39.9
THA.LOC104801148 Tarenaya hassleriana HOM05D004201 ORTHO05D012594 2.1e-16 90.1 159 37.1
BolC3t13436H Brassica oleracea HOM05D004201 ORTHO05D009648 2.7e-16 89.7 158 34.8
CARHR080560 Cardamine hirsuta HOM05D004201 ORTHO05D011677 2.7e-16 89.7 195 36.4
THA.LOC104801147 Tarenaya hassleriana HOM05D004201 ORTHO05D012594 2.7e-16 89.7 182 34.6
BcaC05g30121 Brassica carinata HOM05D004201 ORTHO05D011677 3.6e-16 89.4 198 35.4
AL3G16060 Arabidopsis lyrata HOM05D004201 ORTHO05D011677 4.6e-16 89.0 135 39.3
AL6G37010 Arabidopsis lyrata HOM05D004201 ORTHO05D011677 4.6e-16 89.0 192 35.9
C03p09480 Brassica napus HOM05D004201 ORTHO05D009648 7.9e-16 88.2 98 43.9
AL3G16010 Arabidopsis lyrata HOM05D004201 ORTHO05D011677 1.0e-15 87.8 159 38.4
BcaB01g04950 Brassica carinata HOM05D004201 ORTHO05D009648 1.4e-15 87.4 149 38.9
BolC5t34836H Brassica oleracea HOM05D004201 ORTHO05D011677 1.8e-15 87.0 201 35.8
CARHR196080 Cardamine hirsuta HOM05D004201 ORTHO05D009648 1.8e-15 87.0 112 44.6
AT4G03565 Arabidopsis thaliana HOM05D012310 ORTHO05D012594 2.3e-15 86.7 181 34.3
BcaC01g06667 Brassica carinata HOM05D012310 ORTHO05D012594 2.3e-15 86.7 164 37.2
C03p36650 Brassica napus HOM05D012310 ORTHO05D012594 2.3e-15 86.7 164 37.2
BolC3t15979H Brassica oleracea HOM05D012310 ORTHO05D012594 2.3e-15 86.7 164 37.2
AL1G13250 Arabidopsis lyrata HOM05D004201 ORTHO05D012052 3.0e-15 86.3 190 35.8
AT1G03710 Arabidopsis thaliana HOM05D004201 ORTHO05D012052 3.9e-15 85.9 203 32.0
C05p61800 Brassica napus HOM05D004201 ORTHO05D011677 5.1e-15 85.5 201 33.3
BraA03t12217Z Brassica rapa HOM05D012310 ORTHO05D012594 5.1e-15 85.5 164 37.2
AL1G13240 Arabidopsis lyrata HOM05D004201 ORTHO05D012052 8.8e-15 84.7 202 34.7
Thhalv10029282m.g Eutrema salsugineum HOM05D012310 ORTHO05D012594 8.8e-15 84.7 163 38.7
BcaB02g06909 Brassica carinata HOM05D004201 ORTHO05D012052 1.5e-14 84.0 154 40.9
A10p02260 Brassica napus HOM05D004201 ORTHO05D012052 2.0e-14 83.6 199 34.7
BraA10t42492Z Brassica rapa HOM05D004201 ORTHO05D012052 2.0e-14 83.6 199 34.7
BcaC05g30167 Brassica carinata HOM05D004201 ORTHO05D011677 3.3e-14 82.8 202 34.2
CARHR080810 Cardamine hirsuta HOM05D004201 ORTHO05D014863 3.3e-14 82.8 204 32.8
AT4G03570 Arabidopsis thaliana HOM05D004201 ORTHO05D009648 1.3e-13 80.9 130 43.1
BcaB01g02543 Brassica carinata HOM05D012310 ORTHO05D012594 1.7e-13 80.5 172 34.3
A03p30350 Brassica napus HOM05D012310 ORTHO05D012594 1.7e-13 80.5 164 37.2
AL3G17220 Arabidopsis lyrata HOM05D004201 ORTHO05D014863 2.8e-13 79.7 177 36.7
AL3G17200 Arabidopsis lyrata HOM05D004201 ORTHO05D014863 3.7e-13 79.3 158 36.1
C05p02080 Brassica napus HOM05D004201 ORTHO05D012052 6.3e-13 78.6 154 37.7
BolC5t28985H Brassica oleracea HOM05D004201 ORTHO05D012052 6.3e-13 78.6 154 37.7
Aa31LG1G23790 Aethionema arabicum HOM05D004201 ORTHO05D011677 8.2e-13 78.2 152 32.9
AL1G13200 Arabidopsis lyrata HOM05D004201 ORTHO05D012052 8.2e-13 78.2 199 33.7
A10p02210 Brassica napus HOM05D004201 ORTHO05D012052 8.2e-13 78.2 203 33.5
Aa31LG1G23650 Aethionema arabicum HOM05D004201 ORTHO05D011677 1.1e-12 77.8 154 33.8
AL6G49270 Arabidopsis lyrata HOM05D012310 ORTHO05D012594 1.4e-12 77.4 163 34.4
BraA10t42489Z Brassica rapa HOM05D004201 ORTHO05D012052 2.4e-12 76.6 199 33.2
Aa31LG1G23660 Aethionema arabicum HOM05D004201 ORTHO05D011677 3.1e-12 76.3 217 30.0
BraA09t35931Z Brassica rapa HOM05D004201 ORTHO05D009648 3.1e-12 76.3 75 54.7
Carub.0006s3350 Capsella rubella HOM05D012310 ORTHO05D012594 3.1e-12 76.3 182 33.5
Carub.0003s0573 Capsella rubella HOM05D004201 ORTHO05D014863 5.3e-12 75.5 193 34.2
A05p30050 Brassica napus HOM05D004201 ORTHO05D042104 2.0e-11 73.6 107 38.3
BraA05t19763Z Brassica rapa HOM05D004201 ORTHO05D042104 2.0e-11 73.6 107 38.3
BNapus_Darmor_BZH_scaffold_118p00220 Brassica napus HOM05D014826 ORTHO05D014863 2.6e-11 73.2 144 36.1
BraA05t19067Z Brassica rapa HOM05D004201 ORTHO05D011677 3.4e-11 72.8 164 36.0
BcaC05g24515 Brassica carinata HOM05D004201 ORTHO05D012052 7.7e-11 71.6 135 37.8
AL1G13220 Arabidopsis lyrata HOM05D004201 ORTHO05D012052 1.7e-10 70.5 154 31.8
AL1G13230 Arabidopsis lyrata HOM05D004201 ORTHO05D012052 2.2e-10 70.1 148 31.1
BraA01t04445Z Brassica rapa HOM05D014826 ORTHO05D014863 2.2e-10 70.1 162 37.0
THA.LOC104801562 Tarenaya hassleriana HOM05D004201 ORTHO05D012594 2.2e-10 70.1 162 33.3
CARHR079840 Cardamine hirsuta HOM05D004201 ORTHO05D011677 5.0e-10 68.9 204 32.4
BcaC05g29805 Brassica carinata HOM05D014826 ORTHO05D014863 6.5e-10 68.6 162 35.2
C05p60930 Brassica napus HOM05D014826 ORTHO05D014863 6.5e-10 68.6 162 35.2
BolC5t34749H Brassica oleracea HOM05D014826 ORTHO05D014863 6.5e-10 68.6 162 35.2
Aa31LG11G12520 Aethionema arabicum HOM05D004201 ORTHO05D009648 1.1e-09 67.8 76 44.7
BcaC05g30039 Brassica carinata HOM05D014826 ORTHO05D014863 1.1e-09 67.8 160 36.2
BraA05t22891Z Brassica rapa HOM05D014826 ORTHO05D014863 1.1e-09 67.8 162 32.7
Carub.0001s0281 Capsella rubella HOM05D004201 ORTHO05D012052 1.1e-09 67.8 157 35.7
A05p41720 Brassica napus HOM05D014826 ORTHO05D014863 1.4e-09 67.4 162 33.3
AT4G03590 Arabidopsis thaliana HOM05D004201 ORTHO05D009648 4.2e-09 65.9 159 35.2
CARHR079820 Cardamine hirsuta HOM05D004201 ORTHO05D011677 4.2e-09 65.9 90 42.2
CARHR079790 Cardamine hirsuta HOM05D004201 ORTHO05D011677 1.2e-08 64.3 87 41.4
AL6G49300 Arabidopsis lyrata HOM05D012310 ORTHO05D012594 1.6e-08 63.9 149 35.6
AT3G05450 Arabidopsis thaliana HOM05D004201 ORTHO05D011677 1.0e-07 61.2 151 36.4
THA.LOC104809658 Tarenaya hassleriana HOM05D004201 ORTHO05D012052 6.7e-07 58.5 97 36.1
AL1G56010 Arabidopsis lyrata HOM05D004201 ORTHO05D011677 8.8e-07 58.2 199 33.2
THA.LOC109116327 Tarenaya hassleriana HOM05D004201 ORTHO05D012052 7.4e-06 55.1 155 30.3


User provided reference genes

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