Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT5G17120 Arabidopsis thaliana HOM05D004201 ORTHO05D009648 2.5e-110 402.1 208 100.0
AT5G17150 Arabidopsis thaliana HOM05D004201 ORTHO05D009648 9.7e-86 320.5 208 81.2
BcaB03g13238 Brassica carinata HOM05D004201 ORTHO05D009648 2.3e-55 219.5 186 62.4
BolC8t49120H Brassica oleracea HOM05D004201 ORTHO05D009648 2.6e-54 216.1 189 60.3
A08p33280 Brassica napus HOM05D004201 ORTHO05D009648 7.5e-54 214.5 205 56.6
BcaC07g38685 Brassica carinata HOM05D004201 ORTHO05D009648 9.8e-54 214.2 186 60.2
BraA08t35247Z Brassica rapa HOM05D004201 ORTHO05D009648 2.9e-53 212.6 185 60.5
BcaC06g31919 Brassica carinata HOM05D004201 ORTHO05D009648 3.7e-53 212.2 163 65.6
C08p14870 Brassica napus HOM05D004201 ORTHO05D009648 6.4e-53 211.5 186 59.7
Sp6g27080 Schrenkiella parvula HOM05D004201 ORTHO05D009648 7.8e-51 204.5 151 66.2
Carub.0006s1532 Capsella rubella HOM05D004201 ORTHO05D009648 2.3e-50 203.0 155 64.5
C09p60060 Brassica napus HOM05D004201 ORTHO05D009648 5.0e-50 201.8 175 56.6
BolC9t58841H Brassica oleracea HOM05D004201 ORTHO05D009648 5.0e-50 201.8 175 56.6
Carub.0006s1528 Capsella rubella HOM05D004201 ORTHO05D009648 4.3e-49 198.7 154 61.7
Carub.0006s1527 Capsella rubella HOM05D004201 ORTHO05D009648 1.6e-48 196.8 178 58.4
Carub.0006s1529 Capsella rubella HOM05D004201 ORTHO05D009648 2.8e-48 196.1 160 61.2
AL6G28190 Arabidopsis lyrata HOM05D004201 ORTHO05D009648 1.2e-46 190.7 127 81.9
CARHR196090 Cardamine hirsuta HOM05D004201 ORTHO05D009648 1.7e-45 186.8 159 58.5
A03p08190 Brassica napus HOM05D004201 ORTHO05D009648 7.0e-44 181.4 161 55.3
AT5G17090 Arabidopsis thaliana HOM05D004201 ORTHO05D009648 2.1e-43 179.9 157 58.0
BcaB01g05219 Brassica carinata HOM05D004201 ORTHO05D009648 2.1e-43 179.9 161 54.7
C03p09490 Brassica napus HOM05D004201 ORTHO05D009648 4.6e-43 178.7 161 54.0
BcaB01g04954 Brassica carinata HOM05D004201 ORTHO05D009648 6.0e-43 178.3 205 48.3
A03p08180 Brassica napus HOM05D004201 ORTHO05D009648 1.1e-41 174.1 161 52.2
A03p08140 Brassica napus HOM05D004201 ORTHO05D009648 1.9e-41 173.3 157 54.8
AL6G28160 Arabidopsis lyrata HOM05D004201 ORTHO05D009648 2.5e-41 172.9 202 54.0
BcaB01g05222 Brassica carinata HOM05D004201 ORTHO05D009648 3.3e-41 172.6 161 52.2
Carub.0006s1530 Capsella rubella HOM05D004201 ORTHO05D009648 3.3e-41 172.6 172 52.9
BcaB01g05226 Brassica carinata HOM05D004201 ORTHO05D009648 4.3e-41 172.2 161 52.2
BcaB01g05230 Brassica carinata HOM05D004201 ORTHO05D009648 1.2e-40 170.6 157 52.9
C03p09410 Brassica napus HOM05D004201 ORTHO05D009648 1.6e-40 170.2 157 52.2
BolC3t13435H Brassica oleracea HOM05D004201 ORTHO05D009648 1.6e-40 170.2 157 52.2
BolC3t13445H Brassica oleracea HOM05D004201 ORTHO05D009648 3.6e-40 169.1 153 54.9
Carub.0006s1531 Capsella rubella HOM05D004201 ORTHO05D009648 1.4e-39 167.2 172 50.6
AL6G28110 Arabidopsis lyrata HOM05D004201 ORTHO05D009648 2.3e-39 166.4 194 47.9
BcaB01g05229 Brassica carinata HOM05D004201 ORTHO05D009648 2.3e-39 166.4 168 53.0
BcaB01g05228 Brassica carinata HOM05D004201 ORTHO05D009648 3.1e-39 166.0 163 50.9
BcaB01g05224 Brassica carinata HOM05D004201 ORTHO05D009648 1.5e-38 163.7 161 51.6
BcaB01g05218 Brassica carinata HOM05D004201 ORTHO05D009648 2.0e-38 163.3 157 54.8
AL6G28150 Arabidopsis lyrata HOM05D004201 ORTHO05D009648 2.6e-38 162.9 173 48.6
BcaB01g05225 Brassica carinata HOM05D004201 ORTHO05D009648 4.4e-38 162.2 162 50.6
A03p08170 Brassica napus HOM05D004201 ORTHO05D009648 7.5e-38 161.4 163 50.3
AT5G17110 Arabidopsis thaliana HOM05D004201 ORTHO05D009648 9.9e-38 161.0 203 47.8
BcaB01g04951 Brassica carinata HOM05D004201 ORTHO05D009648 1.3e-37 160.6 160 48.8
BcaB01g04955 Brassica carinata HOM05D004201 ORTHO05D009648 1.7e-37 160.2 161 52.8
AT5G17100 Arabidopsis thaliana HOM05D004201 ORTHO05D009648 2.2e-37 159.8 203 47.8
BcaB01g04956 Brassica carinata HOM05D004201 ORTHO05D009648 2.2e-37 159.8 163 55.2
BraA03t10139Z Brassica rapa HOM05D004201 ORTHO05D009648 2.2e-37 159.8 166 50.0
A10p22250 Brassica napus HOM05D004201 ORTHO05D009648 1.9e-36 156.8 145 53.8
BcaB01g04953 Brassica carinata HOM05D004201 ORTHO05D009648 2.4e-36 156.4 163 49.7
BraA03t10141Z Brassica rapa HOM05D004201 ORTHO05D009648 3.2e-36 156.0 162 48.1
BraA10t44284Z Brassica rapa HOM05D004201 ORTHO05D009648 3.2e-36 156.0 145 53.8
BcaB01g05220 Brassica carinata HOM05D004201 ORTHO05D009648 4.1e-36 155.6 162 49.4
BcaB01g05223 Brassica carinata HOM05D004201 ORTHO05D009648 4.1e-36 155.6 162 49.4
C03p09420 Brassica napus HOM05D004201 ORTHO05D009648 1.2e-35 154.1 161 52.2
C03p09500 Brassica napus HOM05D004201 ORTHO05D009648 1.2e-35 154.1 164 52.4
BcaB01g04958 Brassica carinata HOM05D004201 ORTHO05D009648 2.1e-35 153.3 162 47.5
A03p08160 Brassica napus HOM05D004201 ORTHO05D009648 3.0e-34 149.4 161 50.9
BcaB01g05221 Brassica carinata HOM05D004201 ORTHO05D009648 1.1e-33 147.5 151 50.3
Aa31LG11G12620 Aethionema arabicum HOM05D004201 ORTHO05D009648 4.3e-33 145.6 153 50.3
Aa31LG11G12500 Aethionema arabicum HOM05D004201 ORTHO05D009648 2.8e-32 142.9 181 42.5
Aa31LG11G12560 Aethionema arabicum HOM05D004201 ORTHO05D009648 2.8e-32 142.9 165 46.1
Thhalv10015849m.g Eutrema salsugineum HOM05D004201 ORTHO05D009648 4.7e-32 142.1 177 45.8
Aa31LG11G12790 Aethionema arabicum HOM05D004201 ORTHO05D009648 8.9e-31 137.9 187 44.4
Aa31LG11G12490 Aethionema arabicum HOM05D004201 ORTHO05D009648 3.8e-29 132.5 207 41.1
A03p08200 Brassica napus HOM05D004201 ORTHO05D009648 8.4e-29 131.3 160 45.0
Aa31LG11G12510 Aethionema arabicum HOM05D004201 ORTHO05D009648 1.4e-28 130.6 152 42.1
Aa31LG11G12550 Aethionema arabicum HOM05D004201 ORTHO05D009648 4.2e-28 129.0 161 45.3
Aa31LG11G12540 Aethionema arabicum HOM05D004201 ORTHO05D009648 5.4e-28 128.6 167 41.9
Aa31LG11G12840 Aethionema arabicum HOM05D004201 ORTHO05D009648 7.8e-27 124.8 182 35.7
Aa31LG11G12800 Aethionema arabicum HOM05D004201 ORTHO05D009648 1.7e-26 123.6 153 41.8
Aa31LG11G12830 Aethionema arabicum HOM05D004201 ORTHO05D009648 2.4e-23 113.2 152 41.4
AL3G16370 Arabidopsis lyrata HOM05D004201 ORTHO05D011677 3.1e-23 112.8 196 39.3
AL3G16360 Arabidopsis lyrata HOM05D004201 ORTHO05D031360 4.0e-23 112.5 158 44.9
Aa31LG11G12820 Aethionema arabicum HOM05D004201 ORTHO05D009648 5.3e-23 112.1 150 42.0
BcaB08g36118 Brassica carinata HOM05D004201 ORTHO05D009648 6.9e-23 111.7 153 45.1
BcaC01g06645 Brassica carinata HOM05D004201 ORTHO05D009648 6.9e-23 111.7 159 41.5
Carub.0006s3347 Capsella rubella HOM05D004201 ORTHO05D009648 1.5e-22 110.5 210 40.5
Aa31LG11G12530 Aethionema arabicum HOM05D004201 ORTHO05D009648 2.0e-22 110.2 170 38.2
Carub.0006s3348 Capsella rubella HOM05D004201 ORTHO05D009648 9.9e-22 107.8 161 44.1
A03p20510 Brassica napus HOM05D004201 ORTHO05D009648 1.3e-21 107.5 162 40.7
AL6G49220 Arabidopsis lyrata HOM05D004201 ORTHO05D009648 2.2e-21 106.7 217 39.6
Carub.0006s3349 Capsella rubella HOM05D004201 ORTHO05D009648 6.4e-21 105.1 163 43.6
AL6G49230 Arabidopsis lyrata HOM05D004201 ORTHO05D009648 2.4e-20 103.2 145 46.9
Carub.0006s3346 Capsella rubella HOM05D004201 ORTHO05D009648 1.7e-18 97.1 161 41.0
AL3G16040 Arabidopsis lyrata HOM05D004201 ORTHO05D011677 3.9e-18 95.9 216 32.9
AL304U10030 Arabidopsis lyrata HOM05D004201 ORTHO05D011677 8.7e-18 94.7 160 38.1
C09p02940 Brassica napus HOM05D004201 ORTHO05D009648 1.9e-17 93.6 168 36.9
BcaB01g05217 Brassica carinata HOM05D004201 ORTHO05D009648 7.3e-17 91.7 211 37.4
AL3G16060 Arabidopsis lyrata HOM05D004201 ORTHO05D011677 1.3e-16 90.9 135 40.0
BcaB01g04950 Brassica carinata HOM05D004201 ORTHO05D009648 2.8e-16 89.7 97 51.5
THA.LOC104809407 Tarenaya hassleriana HOM05D004201 ORTHO05D012052 2.8e-16 89.7 157 38.9
BolC3t13436H Brassica oleracea HOM05D004201 ORTHO05D009648 3.6e-16 89.4 97 46.4
BcaC05g30121 Brassica carinata HOM05D004201 ORTHO05D011677 8.1e-16 88.2 216 35.2
THA.LOC104809406 Tarenaya hassleriana HOM05D004201 ORTHO05D012052 1.1e-15 87.8 157 37.6
Thhalv10029282m.g Eutrema salsugineum HOM05D012310 ORTHO05D012594 1.4e-15 87.4 165 39.4
Thhalv10008370m.g Eutrema salsugineum HOM05D004201 ORTHO05D012052 2.4e-15 86.7 162 38.3
THA.LOC104801148 Tarenaya hassleriana HOM05D004201 ORTHO05D012594 3.1e-15 86.3 159 35.8
C03p09480 Brassica napus HOM05D004201 ORTHO05D009648 4.0e-15 85.9 98 44.9
THA.LOC104801147 Tarenaya hassleriana HOM05D004201 ORTHO05D012594 4.0e-15 85.9 159 35.8
BraA09t35929Z Brassica rapa HOM05D004201 ORTHO05D009648 9.0e-15 84.7 157 38.9
C05p61800 Brassica napus HOM05D004201 ORTHO05D011677 1.5e-14 84.0 213 35.7
BcaB08g36116 Brassica carinata HOM05D004201 ORTHO05D009648 2.6e-14 83.2 156 37.8
BcaC01g06667 Brassica carinata HOM05D012310 ORTHO05D012594 3.4e-14 82.8 168 36.9
C03p36650 Brassica napus HOM05D012310 ORTHO05D012594 3.4e-14 82.8 168 36.9
BolC3t15979H Brassica oleracea HOM05D012310 ORTHO05D012594 3.4e-14 82.8 168 36.9
BraA03t12217Z Brassica rapa HOM05D012310 ORTHO05D012594 7.6e-14 81.6 168 36.9
AT4G03565 Arabidopsis thaliana HOM05D012310 ORTHO05D012594 1.7e-13 80.5 170 34.1
A10p02260 Brassica napus HOM05D004201 ORTHO05D012052 1.7e-13 80.5 216 34.3
BraA10t42492Z Brassica rapa HOM05D004201 ORTHO05D012052 1.7e-13 80.5 216 34.3
BcaB01g02543 Brassica carinata HOM05D012310 ORTHO05D012594 3.8e-13 79.3 176 34.7
CARHR080810 Cardamine hirsuta HOM05D004201 ORTHO05D014863 3.8e-13 79.3 214 34.1
Aa31LG1G23790 Aethionema arabicum HOM05D004201 ORTHO05D011677 4.9e-13 79.0 154 33.8
CARHR196080 Cardamine hirsuta HOM05D004201 ORTHO05D009648 4.9e-13 79.0 110 41.8
AL1G13240 Arabidopsis lyrata HOM05D004201 ORTHO05D012052 6.4e-13 78.6 158 36.7
AT4G03570 Arabidopsis thaliana HOM05D004201 ORTHO05D009648 1.4e-12 77.4 138 39.1
BcaC05g30167 Brassica carinata HOM05D004201 ORTHO05D011677 1.4e-12 77.4 218 33.9
BraA05t19067Z Brassica rapa HOM05D004201 ORTHO05D011677 1.4e-12 77.4 161 36.6
THA.LOC104801128 Tarenaya hassleriana HOM05D004201 ORTHO05D012594 1.9e-12 77.0 164 36.0
AT1G03710 Arabidopsis thaliana HOM05D004201 ORTHO05D012052 2.4e-12 76.6 198 30.8
BcaB02g06909 Brassica carinata HOM05D004201 ORTHO05D012052 3.2e-12 76.3 206 36.4
A03p30350 Brassica napus HOM05D012310 ORTHO05D012594 3.2e-12 76.3 168 36.9
AL3G16010 Arabidopsis lyrata HOM05D004201 ORTHO05D011677 4.2e-12 75.9 210 32.4
CARHR079840 Cardamine hirsuta HOM05D004201 ORTHO05D011677 4.2e-12 75.9 184 37.5
AL1G13250 Arabidopsis lyrata HOM05D004201 ORTHO05D012052 5.4e-12 75.5 205 32.7
AL6G49270 Arabidopsis lyrata HOM05D012310 ORTHO05D012594 7.1e-12 75.1 163 35.0
BraA09t35931Z Brassica rapa HOM05D004201 ORTHO05D009648 1.2e-11 74.3 75 50.7
AL3G17220 Arabidopsis lyrata HOM05D004201 ORTHO05D014863 1.6e-11 73.9 159 39.0
THA.LOC104801127 Tarenaya hassleriana HOM05D004201 ORTHO05D012594 1.6e-11 73.9 164 34.8
AL3G17200 Arabidopsis lyrata HOM05D004201 ORTHO05D014863 3.5e-11 72.8 182 34.6
AL6G49300 Arabidopsis lyrata HOM05D012310 ORTHO05D012594 3.5e-11 72.8 172 34.9
A10p02210 Brassica napus HOM05D004201 ORTHO05D012052 4.6e-11 72.4 176 36.4
THA.LOC104801126 Tarenaya hassleriana HOM05D004201 ORTHO05D012594 6.0e-11 72.0 164 34.8
Aa31LG1G23660 Aethionema arabicum HOM05D004201 ORTHO05D011677 7.9e-11 71.6 226 30.1
C05p02080 Brassica napus HOM05D004201 ORTHO05D012052 1.3e-10 70.9 159 37.1
BolC5t28985H Brassica oleracea HOM05D004201 ORTHO05D012052 1.3e-10 70.9 159 37.1
Carub.0003s0573 Capsella rubella HOM05D004201 ORTHO05D014863 1.3e-10 70.9 195 34.9
BraA10t42489Z Brassica rapa HOM05D004201 ORTHO05D012052 1.8e-10 70.5 172 36.0
A05p30050 Brassica napus HOM05D004201 ORTHO05D042104 3.0e-10 69.7 107 38.3
BraA05t19763Z Brassica rapa HOM05D004201 ORTHO05D042104 3.0e-10 69.7 107 38.3
AL1G13200 Arabidopsis lyrata HOM05D004201 ORTHO05D012052 5.1e-10 68.9 162 34.0
Carub.0006s3350 Capsella rubella HOM05D012310 ORTHO05D012594 5.1e-10 68.9 165 34.5
THA.LOC104801562 Tarenaya hassleriana HOM05D004201 ORTHO05D012594 5.1e-10 68.9 162 32.1
Aa31LG11G12520 Aethionema arabicum HOM05D004201 ORTHO05D009648 6.7e-10 68.6 76 46.1
BcaC05g29805 Brassica carinata HOM05D014826 ORTHO05D014863 8.7e-10 68.2 157 38.2
C05p60930 Brassica napus HOM05D014826 ORTHO05D014863 8.7e-10 68.2 157 38.2
BolC5t34749H Brassica oleracea HOM05D014826 ORTHO05D014863 8.7e-10 68.2 157 38.2
A05p41720 Brassica napus HOM05D014826 ORTHO05D014863 2.5e-09 66.6 157 37.6
BraA05t22891Z Brassica rapa HOM05D014826 ORTHO05D014863 5.6e-09 65.5 157 36.3
AL1G13220 Arabidopsis lyrata HOM05D004201 ORTHO05D012052 7.4e-09 65.1 159 30.2
AT4G03590 Arabidopsis thaliana HOM05D004201 ORTHO05D009648 9.6e-09 64.7 214 32.2
BcaC05g30039 Brassica carinata HOM05D014826 ORTHO05D014863 2.1e-08 63.5 157 36.3
BraA01t04445Z Brassica rapa HOM05D014826 ORTHO05D014863 2.1e-08 63.5 185 34.6
AL1G13230 Arabidopsis lyrata HOM05D004201 ORTHO05D012052 6.2e-08 62.0 159 31.4
Carub.0001s0281 Capsella rubella HOM05D004201 ORTHO05D012052 6.2e-08 62.0 156 33.3
Sp6g03580 Schrenkiella parvula HOM05D012310 ORTHO05D012594 1.4e-07 60.8 163 32.5
BcaC05g24515 Brassica carinata HOM05D004201 ORTHO05D012052 2.4e-07 60.1 140 35.7
THA.LOC104809658 Tarenaya hassleriana HOM05D004201 ORTHO05D012052 6.9e-07 58.5 97 34.0
C03p09430 Brassica napus HOM05D004201 ORTHO05D009648 3.4e-06 56.2 54 50.0
BNapus_Darmor_BZH_scaffold_118p00220 Brassica napus HOM05D014826 ORTHO05D014863 5.8e-06 55.5 102 39.2
THA.LOC109116327 Tarenaya hassleriana HOM05D004201 ORTHO05D012052 7.6e-06 55.1 157 31.2


User provided reference genes

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