Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT5G17110 Arabidopsis thaliana HOM05D004201 ORTHO05D009648 6.5e-114 414.1 209 100.0
AL6G28160 Arabidopsis lyrata HOM05D004201 ORTHO05D009648 4.4e-86 321.6 202 82.2
AL6G28110 Arabidopsis lyrata HOM05D004201 ORTHO05D009648 1.6e-80 303.1 187 80.2
AT5G17100 Arabidopsis thaliana HOM05D004201 ORTHO05D009648 5.2e-79 298.1 199 78.4
AL6G28150 Arabidopsis lyrata HOM05D004201 ORTHO05D009648 2.7e-75 285.8 211 70.6
Carub.0006s1530 Capsella rubella HOM05D004201 ORTHO05D009648 6.0e-59 231.5 167 66.5
Carub.0006s1531 Capsella rubella HOM05D004201 ORTHO05D009648 2.3e-58 229.6 167 65.3
Thhalv10015849m.g Eutrema salsugineum HOM05D004201 ORTHO05D009648 2.7e-51 206.1 204 52.5
AT5G17120 Arabidopsis thaliana HOM05D004201 ORTHO05D009648 3.1e-39 166.0 203 47.8
AT5G17150 Arabidopsis thaliana HOM05D004201 ORTHO05D009648 6.9e-39 164.9 203 45.3
Carub.0006s1532 Capsella rubella HOM05D004201 ORTHO05D009648 1.2e-38 164.1 193 46.1
CARHR196080 Cardamine hirsuta HOM05D004201 ORTHO05D009648 5.8e-38 161.8 127 63.8
Carub.0006s1528 Capsella rubella HOM05D004201 ORTHO05D009648 1.9e-36 156.8 194 43.3
AT5G17090 Arabidopsis thaliana HOM05D004201 ORTHO05D009648 1.6e-35 153.7 196 44.4
C03p09490 Brassica napus HOM05D004201 ORTHO05D009648 2.1e-35 153.3 168 44.0
BolC3t13435H Brassica oleracea HOM05D004201 ORTHO05D009648 6.0e-35 151.8 168 44.0
BcaB01g05219 Brassica carinata HOM05D004201 ORTHO05D009648 7.8e-35 151.4 168 43.5
A03p08190 Brassica napus HOM05D004201 ORTHO05D009648 7.8e-35 151.4 190 41.1
C03p09410 Brassica napus HOM05D004201 ORTHO05D009648 2.3e-34 149.8 164 43.9
C09p60060 Brassica napus HOM05D004201 ORTHO05D009648 2.3e-34 149.8 186 44.6
BolC9t58841H Brassica oleracea HOM05D004201 ORTHO05D009648 2.3e-34 149.8 186 44.6
A03p08180 Brassica napus HOM05D004201 ORTHO05D009648 3.9e-34 149.1 156 43.6
A03p08140 Brassica napus HOM05D004201 ORTHO05D009648 5.1e-34 148.7 156 44.9
BcaB01g05230 Brassica carinata HOM05D004201 ORTHO05D009648 1.5e-33 147.1 156 44.2
A08p33280 Brassica napus HOM05D004201 ORTHO05D009648 1.5e-33 147.1 156 47.4
BcaB03g13238 Brassica carinata HOM05D004201 ORTHO05D009648 2.5e-33 146.4 156 45.5
BcaC07g38685 Brassica carinata HOM05D004201 ORTHO05D009648 3.3e-33 146.0 156 47.4
BolC8t49120H Brassica oleracea HOM05D004201 ORTHO05D009648 3.3e-33 146.0 156 47.4
BraA08t35247Z Brassica rapa HOM05D004201 ORTHO05D009648 4.3e-33 145.6 155 48.4
Carub.0006s1529 Capsella rubella HOM05D004201 ORTHO05D009648 4.3e-33 145.6 155 46.5
BcaB01g04951 Brassica carinata HOM05D004201 ORTHO05D009648 5.6e-33 145.2 202 38.1
BcaB01g04954 Brassica carinata HOM05D004201 ORTHO05D009648 9.6e-33 144.4 210 40.5
BolC3t13445H Brassica oleracea HOM05D004201 ORTHO05D009648 9.6e-33 144.4 164 42.7
Carub.0006s1527 Capsella rubella HOM05D004201 ORTHO05D009648 9.6e-33 144.4 195 40.5
BcaB01g05222 Brassica carinata HOM05D004201 ORTHO05D009648 1.3e-32 144.1 182 40.1
BcaB01g05226 Brassica carinata HOM05D004201 ORTHO05D009648 1.3e-32 144.1 182 40.1
CARHR196090 Cardamine hirsuta HOM05D004201 ORTHO05D009648 1.6e-32 143.7 185 43.2
C08p14870 Brassica napus HOM05D004201 ORTHO05D009648 2.1e-32 143.3 156 46.8
BcaC06g31919 Brassica carinata HOM05D004201 ORTHO05D009648 2.8e-32 142.9 156 46.8
BcaB01g05224 Brassica carinata HOM05D004201 ORTHO05D009648 1.1e-31 141.0 191 39.8
BraA03t10141Z Brassica rapa HOM05D004201 ORTHO05D009648 1.4e-31 140.6 159 44.0
BcaB01g05220 Brassica carinata HOM05D004201 ORTHO05D009648 2.4e-31 139.8 159 44.0
BcaB01g05223 Brassica carinata HOM05D004201 ORTHO05D009648 2.4e-31 139.8 159 44.0
BcaB01g05228 Brassica carinata HOM05D004201 ORTHO05D009648 2.4e-31 139.8 165 44.2
Sp6g27080 Schrenkiella parvula HOM05D004201 ORTHO05D009648 4.5e-30 135.6 170 44.7
BcaB01g04955 Brassica carinata HOM05D004201 ORTHO05D009648 9.9e-30 134.4 156 41.7
BraA03t10139Z Brassica rapa HOM05D004201 ORTHO05D009648 9.9e-30 134.4 209 38.3
BcaB01g05225 Brassica carinata HOM05D004201 ORTHO05D009648 1.7e-29 133.7 183 38.8
BcaB01g04953 Brassica carinata HOM05D004201 ORTHO05D009648 2.9e-29 132.9 159 43.4
A03p08170 Brassica napus HOM05D004201 ORTHO05D009648 1.1e-28 131.0 165 42.4
BcaB01g05218 Brassica carinata HOM05D004201 ORTHO05D009648 1.9e-28 130.2 155 42.6
BcaB01g04958 Brassica carinata HOM05D004201 ORTHO05D009648 4.2e-28 129.0 159 44.0
BcaB01g05229 Brassica carinata HOM05D004201 ORTHO05D009648 5.4e-28 128.6 164 40.9
A03p08160 Brassica napus HOM05D004201 ORTHO05D009648 2.7e-27 126.3 157 41.4
BcaB01g04956 Brassica carinata HOM05D004201 ORTHO05D009648 4.6e-27 125.6 157 42.7
C03p09420 Brassica napus HOM05D004201 ORTHO05D009648 1.0e-26 124.4 157 40.8
A03p08200 Brassica napus HOM05D004201 ORTHO05D009648 3.0e-26 122.9 147 44.2
Aa31LG11G12540 Aethionema arabicum HOM05D004201 ORTHO05D009648 1.1e-25 120.9 154 39.6
BcaB01g05221 Brassica carinata HOM05D004201 ORTHO05D009648 1.1e-25 120.9 146 41.1
Aa31LG11G12620 Aethionema arabicum HOM05D004201 ORTHO05D009648 3.3e-25 119.4 186 37.1
Aa31LG11G12510 Aethionema arabicum HOM05D004201 ORTHO05D009648 5.6e-25 118.6 156 39.7
Aa31LG11G12490 Aethionema arabicum HOM05D004201 ORTHO05D009648 9.6e-25 117.9 156 38.5
Aa31LG11G12560 Aethionema arabicum HOM05D004201 ORTHO05D009648 9.6e-25 117.9 171 35.1
C03p09500 Brassica napus HOM05D004201 ORTHO05D009648 9.6e-25 117.9 162 40.1
Aa31LG11G12800 Aethionema arabicum HOM05D004201 ORTHO05D009648 4.0e-23 112.5 155 38.7
Aa31LG11G12790 Aethionema arabicum HOM05D004201 ORTHO05D009648 9.0e-23 111.3 153 36.6
A10p22250 Brassica napus HOM05D004201 ORTHO05D009648 1.5e-22 110.5 156 40.4
Aa31LG11G12500 Aethionema arabicum HOM05D004201 ORTHO05D009648 3.4e-22 109.4 192 34.4
BraA10t44284Z Brassica rapa HOM05D004201 ORTHO05D009648 3.4e-22 109.4 155 40.0
Aa31LG11G12530 Aethionema arabicum HOM05D004201 ORTHO05D009648 7.6e-22 108.2 185 36.2
BcaB08g36118 Brassica carinata HOM05D004201 ORTHO05D009648 3.8e-21 105.9 153 39.9
A03p20510 Brassica napus HOM05D004201 ORTHO05D009648 3.8e-21 105.9 160 41.2
Aa31LG11G12550 Aethionema arabicum HOM05D004201 ORTHO05D009648 6.5e-21 105.1 153 35.9
BcaC01g06645 Brassica carinata HOM05D004201 ORTHO05D009648 6.5e-21 105.1 198 38.9
Aa31LG11G12830 Aethionema arabicum HOM05D004201 ORTHO05D009648 8.4e-21 104.8 150 36.7
C09p02940 Brassica napus HOM05D004201 ORTHO05D009648 9.3e-20 101.3 166 38.0
Carub.0006s3347 Capsella rubella HOM05D004201 ORTHO05D009648 2.7e-19 99.8 227 34.4
Carub.0006s3349 Capsella rubella HOM05D004201 ORTHO05D009648 2.7e-19 99.8 165 38.2
Aa31LG11G12840 Aethionema arabicum HOM05D004201 ORTHO05D009648 6.0e-19 98.6 192 31.2
Carub.0006s3348 Capsella rubella HOM05D004201 ORTHO05D009648 1.3e-18 97.4 161 39.1
AL3G16370 Arabidopsis lyrata HOM05D004201 ORTHO05D011677 3.9e-18 95.9 198 34.3
Aa31LG11G12820 Aethionema arabicum HOM05D004201 ORTHO05D009648 5.1e-18 95.5 136 34.6
AL3G16360 Arabidopsis lyrata HOM05D004201 ORTHO05D031360 6.7e-18 95.1 206 33.5
AL6G49230 Arabidopsis lyrata HOM05D004201 ORTHO05D009648 3.3e-17 92.8 148 39.9
Carub.0006s3346 Capsella rubella HOM05D004201 ORTHO05D009648 3.3e-17 92.8 165 38.8
THA.LOC104809406 Tarenaya hassleriana HOM05D004201 ORTHO05D012052 4.3e-17 92.4 219 35.2
Aa31LG1G23790 Aethionema arabicum HOM05D004201 ORTHO05D011677 9.6e-17 91.3 168 33.9
AL6G49220 Arabidopsis lyrata HOM05D004201 ORTHO05D009648 1.6e-16 90.5 211 34.1
BcaC05g30121 Brassica carinata HOM05D004201 ORTHO05D011677 6.2e-16 88.6 212 32.5
AL3G16040 Arabidopsis lyrata HOM05D004201 ORTHO05D011677 1.8e-15 87.0 194 35.1
C05p61800 Brassica napus HOM05D004201 ORTHO05D011677 3.1e-15 86.3 203 33.5
CARHR080810 Cardamine hirsuta HOM05D004201 ORTHO05D014863 3.1e-15 86.3 213 31.9
BcaC05g30167 Brassica carinata HOM05D004201 ORTHO05D011677 4.0e-15 85.9 162 38.9
THA.LOC104809407 Tarenaya hassleriana HOM05D004201 ORTHO05D012052 6.9e-15 85.1 214 31.8
Carub.0003s0573 Capsella rubella HOM05D004201 ORTHO05D014863 1.5e-14 84.0 208 34.1
A10p02260 Brassica napus HOM05D004201 ORTHO05D012052 2.6e-14 83.2 156 35.9
BraA10t42492Z Brassica rapa HOM05D004201 ORTHO05D012052 2.6e-14 83.2 156 35.9
BraA09t35929Z Brassica rapa HOM05D004201 ORTHO05D009648 3.4e-14 82.8 159 37.1
BcaB02g06909 Brassica carinata HOM05D004201 ORTHO05D012052 5.8e-14 82.0 157 38.2
BcaB08g36116 Brassica carinata HOM05D004201 ORTHO05D009648 5.8e-14 82.0 161 37.3
AT1G03710 Arabidopsis thaliana HOM05D004201 ORTHO05D012052 7.6e-14 81.6 177 33.9
CARHR080560 Cardamine hirsuta HOM05D004201 ORTHO05D011677 7.6e-14 81.6 167 37.1
Thhalv10021511m.g Eutrema salsugineum HOM05D004201 ORTHO05D011677 7.6e-14 81.6 169 33.7
AL6G37010 Arabidopsis lyrata HOM05D004201 ORTHO05D011677 1.0e-13 81.3 155 33.5
AL8G28550 Arabidopsis lyrata HOM05D004201 ORTHO05D011677 1.0e-13 81.3 155 33.5
AL3G16010 Arabidopsis lyrata HOM05D004201 ORTHO05D011677 2.9e-13 79.7 159 35.8
BolC5t34836H Brassica oleracea HOM05D004201 ORTHO05D011677 8.4e-13 78.2 219 29.7
Aa31LG1G23650 Aethionema arabicum HOM05D004201 ORTHO05D011677 1.1e-12 77.8 152 33.6
Aa31LG1G23660 Aethionema arabicum HOM05D004201 ORTHO05D011677 1.1e-12 77.8 204 29.9
BraA09t35931Z Brassica rapa HOM05D004201 ORTHO05D009648 1.1e-12 77.8 74 52.7
AL304U10030 Arabidopsis lyrata HOM05D004201 ORTHO05D011677 1.4e-12 77.4 161 32.9
BNapus_Darmor_BZH_scaffold_118p00220 Brassica napus HOM05D014826 ORTHO05D014863 1.4e-12 77.4 170 37.1
AL3G17200 Arabidopsis lyrata HOM05D004201 ORTHO05D014863 2.5e-12 76.6 159 34.0
BraA01t04445Z Brassica rapa HOM05D014826 ORTHO05D014863 5.5e-12 75.5 201 30.3
BcaC05g29805 Brassica carinata HOM05D014826 ORTHO05D014863 7.1e-12 75.1 159 34.0
C05p60930 Brassica napus HOM05D014826 ORTHO05D014863 7.1e-12 75.1 159 34.0
BolC5t34749H Brassica oleracea HOM05D014826 ORTHO05D014863 7.1e-12 75.1 159 34.0
BraA10t42489Z Brassica rapa HOM05D004201 ORTHO05D012052 7.1e-12 75.1 158 35.4
A10p02210 Brassica napus HOM05D004201 ORTHO05D012052 1.6e-11 73.9 156 35.3
BraA05t19067Z Brassica rapa HOM05D004201 ORTHO05D011677 1.6e-11 73.9 218 29.4
C05p02080 Brassica napus HOM05D004201 ORTHO05D012052 2.1e-11 73.6 157 35.0
BolC5t28985H Brassica oleracea HOM05D004201 ORTHO05D012052 2.1e-11 73.6 157 35.0
AL1G13250 Arabidopsis lyrata HOM05D004201 ORTHO05D012052 2.7e-11 73.2 150 32.7
BcaB01g05217 Brassica carinata HOM05D004201 ORTHO05D009648 3.5e-11 72.8 201 30.3
AL1G13240 Arabidopsis lyrata HOM05D004201 ORTHO05D012052 4.6e-11 72.4 150 32.0
AT4G03565 Arabidopsis thaliana HOM05D012310 ORTHO05D012594 7.9e-11 71.6 161 32.9
A05p41720 Brassica napus HOM05D014826 ORTHO05D014863 7.9e-11 71.6 197 31.5
Carub.0001s0281 Capsella rubella HOM05D004201 ORTHO05D012052 7.9e-11 71.6 160 30.6
BraA05t22891Z Brassica rapa HOM05D014826 ORTHO05D014863 1.0e-10 71.2 197 31.5
AT4G03590 Arabidopsis thaliana HOM05D004201 ORTHO05D009648 1.3e-10 70.9 213 31.0
BolC3t13436H Brassica oleracea HOM05D004201 ORTHO05D009648 1.8e-10 70.5 102 37.3
AL3G17220 Arabidopsis lyrata HOM05D004201 ORTHO05D014863 3.0e-10 69.7 193 29.0
BcaC05g24515 Brassica carinata HOM05D004201 ORTHO05D012052 3.9e-10 69.3 141 36.2
AT4G03570 Arabidopsis thaliana HOM05D004201 ORTHO05D009648 5.1e-10 68.9 121 37.2
BcaB01g02543 Brassica carinata HOM05D012310 ORTHO05D012594 5.1e-10 68.9 80 42.5
Thhalv10029282m.g Eutrema salsugineum HOM05D012310 ORTHO05D012594 5.1e-10 68.9 166 33.1
THA.LOC104801128 Tarenaya hassleriana HOM05D004201 ORTHO05D012594 6.7e-10 68.6 163 33.1
C03p09480 Brassica napus HOM05D004201 ORTHO05D009648 8.7e-10 68.2 98 37.8
Aa31LG11G12520 Aethionema arabicum HOM05D004201 ORTHO05D009648 1.5e-09 67.4 82 40.2
AL3G16060 Arabidopsis lyrata HOM05D004201 ORTHO05D011677 1.5e-09 67.4 86 38.4
THA.LOC104801127 Tarenaya hassleriana HOM05D004201 ORTHO05D012594 1.5e-09 67.4 163 32.5
BcaC05g30039 Brassica carinata HOM05D014826 ORTHO05D014863 3.3e-09 66.2 198 29.8
AL6G49270 Arabidopsis lyrata HOM05D012310 ORTHO05D012594 5.7e-09 65.5 163 33.1
CARHR079820 Cardamine hirsuta HOM05D004201 ORTHO05D011677 7.4e-09 65.1 81 43.2
CARHR079840 Cardamine hirsuta HOM05D004201 ORTHO05D011677 9.7e-09 64.7 193 30.6
THA.LOC104801147 Tarenaya hassleriana HOM05D004201 ORTHO05D012594 9.7e-09 64.7 159 30.2
THA.LOC104801148 Tarenaya hassleriana HOM05D004201 ORTHO05D012594 9.7e-09 64.7 159 30.2
AL1G13220 Arabidopsis lyrata HOM05D004201 ORTHO05D012052 1.3e-08 64.3 158 29.1
Thhalv10008370m.g Eutrema salsugineum HOM05D004201 ORTHO05D012052 1.3e-08 64.3 160 27.5
THA.LOC104801126 Tarenaya hassleriana HOM05D004201 ORTHO05D012594 2.2e-08 63.5 163 31.9
Aa31LG1G23540 Aethionema arabicum HOM05D004201 ORTHO05D011677 2.8e-08 63.2 155 27.1
AL1G13200 Arabidopsis lyrata HOM05D004201 ORTHO05D012052 3.7e-08 62.8 203 30.0
BraA03t12217Z Brassica rapa HOM05D012310 ORTHO05D012594 3.7e-08 62.8 165 30.3
CARHR079790 Cardamine hirsuta HOM05D004201 ORTHO05D011677 4.8e-08 62.4 79 43.0
AL1G13230 Arabidopsis lyrata HOM05D004201 ORTHO05D012052 1.4e-07 60.8 158 27.8
BcaB01g04950 Brassica carinata HOM05D004201 ORTHO05D009648 1.4e-07 60.8 142 31.7
AL6G28190 Arabidopsis lyrata HOM05D004201 ORTHO05D009648 1.8e-07 60.5 114 32.5
THA.LOC104801560 Tarenaya hassleriana HOM05D004201 ORTHO05D012594 2.4e-07 60.1 140 31.4
A03p30350 Brassica napus HOM05D012310 ORTHO05D012594 6.9e-07 58.5 165 29.7
CARHR252000 Cardamine hirsuta HOM05D012310 ORTHO05D012594 6.9e-07 58.5 156 30.1
Aa31LG1G23530 Aethionema arabicum HOM05D004201 ORTHO05D011677 1.2e-06 57.8 156 25.6
C03p09430 Brassica napus HOM05D004201 ORTHO05D009648 7.7e-06 55.1 63 39.7


User provided reference genes

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