Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT5G17090 Arabidopsis thaliana HOM05D004201 ORTHO05D009648 4.6e-121 438.0 231 100.0
Carub.0006s1532 Capsella rubella HOM05D004201 ORTHO05D009648 4.0e-72 275.4 176 75.6
Carub.0006s1528 Capsella rubella HOM05D004201 ORTHO05D009648 3.5e-68 262.3 234 61.1
CARHR196090 Cardamine hirsuta HOM05D004201 ORTHO05D009648 4.4e-47 192.2 159 61.6
AT5G17120 Arabidopsis thaliana HOM05D004201 ORTHO05D009648 3.2e-45 186.0 157 58.0
AT5G17150 Arabidopsis thaliana HOM05D004201 ORTHO05D009648 3.5e-44 182.6 157 58.0
A03p08190 Brassica napus HOM05D004201 ORTHO05D009648 3.5e-44 182.6 156 59.6
BcaB01g05219 Brassica carinata HOM05D004201 ORTHO05D009648 3.3e-42 176.0 156 57.1
C03p09490 Brassica napus HOM05D004201 ORTHO05D009648 1.6e-41 173.7 156 55.8
Carub.0006s1529 Capsella rubella HOM05D004201 ORTHO05D009648 2.1e-41 173.3 172 54.1
BcaB01g04954 Brassica carinata HOM05D004201 ORTHO05D009648 3.6e-41 172.6 225 48.4
A03p08140 Brassica napus HOM05D004201 ORTHO05D009648 3.6e-41 172.6 152 57.9
A03p08180 Brassica napus HOM05D004201 ORTHO05D009648 4.7e-41 172.2 169 52.1
Carub.0006s1527 Capsella rubella HOM05D004201 ORTHO05D009648 4.7e-41 172.2 172 54.7
BraA03t10139Z Brassica rapa HOM05D004201 ORTHO05D009648 1.1e-40 171.0 161 55.3
BcaB01g05230 Brassica carinata HOM05D004201 ORTHO05D009648 1.4e-40 170.6 156 55.8
BcaB01g05222 Brassica carinata HOM05D004201 ORTHO05D009648 1.8e-40 170.2 156 55.1
BcaB01g05226 Brassica carinata HOM05D004201 ORTHO05D009648 1.8e-40 170.2 156 55.1
A03p08170 Brassica napus HOM05D004201 ORTHO05D009648 1.8e-40 170.2 158 55.1
BcaB01g04951 Brassica carinata HOM05D004201 ORTHO05D009648 2.4e-40 169.9 156 55.8
BcaB01g05228 Brassica carinata HOM05D004201 ORTHO05D009648 3.1e-40 169.5 158 55.7
C03p09410 Brassica napus HOM05D004201 ORTHO05D009648 3.1e-40 169.5 156 54.5
BolC3t13435H Brassica oleracea HOM05D004201 ORTHO05D009648 3.1e-40 169.5 156 54.5
BolC3t13445H Brassica oleracea HOM05D004201 ORTHO05D009648 9.0e-40 167.9 158 56.3
BcaB01g05218 Brassica carinata HOM05D004201 ORTHO05D009648 2.6e-39 166.4 158 55.7
BcaB01g04956 Brassica carinata HOM05D004201 ORTHO05D009648 3.4e-39 166.0 157 58.0
BcaB01g04953 Brassica carinata HOM05D004201 ORTHO05D009648 9.9e-39 164.5 158 55.1
BcaB01g05224 Brassica carinata HOM05D004201 ORTHO05D009648 2.2e-38 163.3 157 55.4
BcaB01g04958 Brassica carinata HOM05D004201 ORTHO05D009648 4.9e-38 162.2 154 57.1
BraA03t10141Z Brassica rapa HOM05D004201 ORTHO05D009648 4.9e-38 162.2 158 53.8
BcaB01g05225 Brassica carinata HOM05D004201 ORTHO05D009648 2.4e-37 159.8 157 53.5
BcaB03g13238 Brassica carinata HOM05D004201 ORTHO05D009648 2.4e-37 159.8 153 52.9
BcaC07g38685 Brassica carinata HOM05D004201 ORTHO05D009648 3.2e-37 159.5 167 49.7
BolC8t49120H Brassica oleracea HOM05D004201 ORTHO05D009648 3.2e-37 159.5 167 49.7
AL6G28110 Arabidopsis lyrata HOM05D004201 ORTHO05D009648 4.2e-37 159.1 232 40.1
BcaB01g04955 Brassica carinata HOM05D004201 ORTHO05D009648 5.4e-37 158.7 153 54.2
BcaB01g05220 Brassica carinata HOM05D004201 ORTHO05D009648 5.4e-37 158.7 158 53.8
BcaB01g05223 Brassica carinata HOM05D004201 ORTHO05D009648 5.4e-37 158.7 158 53.8
A08p33280 Brassica napus HOM05D004201 ORTHO05D009648 5.4e-37 158.7 153 52.3
AL6G28160 Arabidopsis lyrata HOM05D004201 ORTHO05D009648 7.1e-37 158.3 138 57.2
BcaB01g05229 Brassica carinata HOM05D004201 ORTHO05D009648 7.1e-37 158.3 164 53.7
BcaC06g31919 Brassica carinata HOM05D004201 ORTHO05D009648 9.3e-37 157.9 153 51.6
C09p60060 Brassica napus HOM05D004201 ORTHO05D009648 1.6e-36 157.1 153 51.6
BolC9t58841H Brassica oleracea HOM05D004201 ORTHO05D009648 1.6e-36 157.1 153 51.6
C08p14870 Brassica napus HOM05D004201 ORTHO05D009648 2.1e-36 156.8 167 49.1
AT5G17110 Arabidopsis thaliana HOM05D004201 ORTHO05D009648 2.7e-36 156.4 196 44.4
AT5G17100 Arabidopsis thaliana HOM05D004201 ORTHO05D009648 6.0e-36 155.2 161 48.4
BraA08t35247Z Brassica rapa HOM05D004201 ORTHO05D009648 7.8e-36 154.8 167 49.7
A03p08160 Brassica napus HOM05D004201 ORTHO05D009648 5.1e-35 152.1 157 53.5
Carub.0006s1530 Capsella rubella HOM05D004201 ORTHO05D009648 8.7e-35 151.4 154 49.4
AL6G28150 Arabidopsis lyrata HOM05D004201 ORTHO05D009648 1.5e-34 150.6 196 43.4
Sp6g27080 Schrenkiella parvula HOM05D004201 ORTHO05D009648 1.9e-34 150.2 164 49.4
C03p09420 Brassica napus HOM05D004201 ORTHO05D009648 5.6e-34 148.7 157 52.2
BcaB01g05221 Brassica carinata HOM05D004201 ORTHO05D009648 2.1e-33 146.7 148 53.4
Carub.0006s1531 Capsella rubella HOM05D004201 ORTHO05D009648 4.8e-33 145.6 154 47.4
Thhalv10015849m.g Eutrema salsugineum HOM05D004201 ORTHO05D009648 1.5e-31 140.6 171 46.8
A03p08200 Brassica napus HOM05D004201 ORTHO05D009648 1.7e-30 137.1 156 50.0
Aa31LG11G12620 Aethionema arabicum HOM05D004201 ORTHO05D009648 9.3e-29 131.3 220 37.3
Aa31LG11G12490 Aethionema arabicum HOM05D004201 ORTHO05D009648 6.0e-28 128.6 178 44.4
AL3G16360 Arabidopsis lyrata HOM05D004201 ORTHO05D031360 1.3e-27 127.5 158 47.5
Aa31LG11G12560 Aethionema arabicum HOM05D004201 ORTHO05D009648 2.3e-27 126.7 165 44.8
Aa31LG11G12500 Aethionema arabicum HOM05D004201 ORTHO05D009648 8.7e-27 124.8 156 44.9
Aa31LG11G12540 Aethionema arabicum HOM05D004201 ORTHO05D009648 1.9e-26 123.6 154 44.2
Aa31LG11G12790 Aethionema arabicum HOM05D004201 ORTHO05D009648 4.3e-26 122.5 196 40.3
C03p09500 Brassica napus HOM05D004201 ORTHO05D009648 1.6e-25 120.6 203 41.9
Aa31LG11G12510 Aethionema arabicum HOM05D004201 ORTHO05D009648 4.8e-25 119.0 154 42.9
AL3G16370 Arabidopsis lyrata HOM05D004201 ORTHO05D011677 3.1e-24 116.3 178 38.8
Aa31LG11G12800 Aethionema arabicum HOM05D004201 ORTHO05D009648 4.0e-24 115.9 164 40.9
Aa31LG11G12830 Aethionema arabicum HOM05D004201 ORTHO05D009648 5.3e-24 115.5 156 41.0
BraA10t44284Z Brassica rapa HOM05D004201 ORTHO05D009648 6.9e-24 115.2 123 48.0
Aa31LG11G12840 Aethionema arabicum HOM05D004201 ORTHO05D009648 2.0e-23 113.6 155 41.3
Carub.0006s3348 Capsella rubella HOM05D004201 ORTHO05D009648 2.6e-23 113.2 164 43.3
BcaC01g06645 Brassica carinata HOM05D004201 ORTHO05D009648 3.4e-23 112.8 159 44.0
A10p22250 Brassica napus HOM05D004201 ORTHO05D009648 3.4e-23 112.8 123 47.2
Aa31LG11G12550 Aethionema arabicum HOM05D004201 ORTHO05D009648 9.9e-23 111.3 152 41.4
A03p20510 Brassica napus HOM05D004201 ORTHO05D009648 1.3e-22 110.9 162 43.8
BcaB08g36118 Brassica carinata HOM05D004201 ORTHO05D009648 2.9e-22 109.8 154 45.5
Carub.0006s3347 Capsella rubella HOM05D004201 ORTHO05D009648 2.9e-22 109.8 165 41.2
Aa31LG11G12530 Aethionema arabicum HOM05D004201 ORTHO05D009648 6.4e-22 108.6 159 39.0
Aa31LG11G12820 Aethionema arabicum HOM05D004201 ORTHO05D009648 3.2e-21 106.3 149 38.9
C09p02940 Brassica napus HOM05D004201 ORTHO05D009648 1.2e-20 104.4 168 42.9
Carub.0006s3346 Capsella rubella HOM05D004201 ORTHO05D009648 1.2e-20 104.4 172 42.4
Carub.0006s3349 Capsella rubella HOM05D004201 ORTHO05D009648 2.7e-20 103.2 165 40.0
AL6G49220 Arabidopsis lyrata HOM05D004201 ORTHO05D009648 6.0e-20 102.1 161 42.2
AL6G49230 Arabidopsis lyrata HOM05D004201 ORTHO05D009648 1.9e-18 97.1 168 41.1
BcaB01g05217 Brassica carinata HOM05D004201 ORTHO05D009648 1.9e-18 97.1 156 41.0
BraA09t35929Z Brassica rapa HOM05D004201 ORTHO05D009648 5.6e-18 95.5 166 41.0
A05p41720 Brassica napus HOM05D014826 ORTHO05D014863 1.6e-17 94.0 159 38.4
BcaB08g36116 Brassica carinata HOM05D004201 ORTHO05D009648 2.1e-17 93.6 160 41.2
BolC3t13436H Brassica oleracea HOM05D004201 ORTHO05D009648 3.7e-17 92.8 90 50.0
AL3G16040 Arabidopsis lyrata HOM05D004201 ORTHO05D011677 4.8e-17 92.4 186 37.1
BraA05t22891Z Brassica rapa HOM05D014826 ORTHO05D014863 4.8e-17 92.4 159 37.7
C03p09480 Brassica napus HOM05D004201 ORTHO05D009648 1.8e-16 90.5 100 46.0
AT1G03710 Arabidopsis thaliana HOM05D004201 ORTHO05D012052 4.0e-16 89.4 155 38.7
BcaB02g06909 Brassica carinata HOM05D004201 ORTHO05D012052 5.3e-16 89.0 162 40.1
Thhalv10021511m.g Eutrema salsugineum HOM05D004201 ORTHO05D011677 9.0e-16 88.2 178 36.5
AL1G13240 Arabidopsis lyrata HOM05D004201 ORTHO05D012052 2.0e-15 87.0 163 37.4
AL304U10030 Arabidopsis lyrata HOM05D004201 ORTHO05D011677 2.0e-15 87.0 163 36.8
AL6G28190 Arabidopsis lyrata HOM05D004201 ORTHO05D009648 2.0e-15 87.0 75 53.3
A10p02260 Brassica napus HOM05D004201 ORTHO05D012052 3.4e-15 86.3 163 39.3
BraA10t42492Z Brassica rapa HOM05D004201 ORTHO05D012052 3.4e-15 86.3 163 39.3
CARHR080560 Cardamine hirsuta HOM05D004201 ORTHO05D011677 5.8e-15 85.5 167 35.9
AL3G16010 Arabidopsis lyrata HOM05D004201 ORTHO05D011677 7.6e-15 85.1 160 35.6
AL1G13250 Arabidopsis lyrata HOM05D004201 ORTHO05D012052 1.0e-14 84.7 158 38.0
BcaC05g30121 Brassica carinata HOM05D004201 ORTHO05D011677 1.0e-14 84.7 161 36.0
Thhalv10008370m.g Eutrema salsugineum HOM05D004201 ORTHO05D012052 1.3e-14 84.3 174 36.2
AL3G16060 Arabidopsis lyrata HOM05D004201 ORTHO05D011677 1.7e-14 84.0 139 35.3
BolC5t34836H Brassica oleracea HOM05D004201 ORTHO05D011677 1.7e-14 84.0 159 36.5
AL1G13200 Arabidopsis lyrata HOM05D004201 ORTHO05D012052 2.2e-14 83.6 170 35.3
Carub.0003s0573 Capsella rubella HOM05D004201 ORTHO05D014863 2.2e-14 83.6 166 36.1
CARHR080810 Cardamine hirsuta HOM05D004201 ORTHO05D014863 3.8e-14 82.8 159 37.1
AL3G17200 Arabidopsis lyrata HOM05D004201 ORTHO05D014863 4.9e-14 82.4 158 36.1
BcaB01g04950 Brassica carinata HOM05D004201 ORTHO05D009648 4.9e-14 82.4 104 47.1
BcaC05g30167 Brassica carinata HOM05D004201 ORTHO05D011677 4.9e-14 82.4 162 34.0
C05p61800 Brassica napus HOM05D004201 ORTHO05D011677 4.9e-14 82.4 159 35.8
Carub.0001s0281 Capsella rubella HOM05D004201 ORTHO05D012052 6.5e-14 82.0 155 35.5
THA.LOC104809406 Tarenaya hassleriana HOM05D004201 ORTHO05D012052 1.4e-13 80.9 156 37.8
THA.LOC104809407 Tarenaya hassleriana HOM05D004201 ORTHO05D012052 1.4e-13 80.9 169 36.7
BraA10t42489Z Brassica rapa HOM05D004201 ORTHO05D012052 1.9e-13 80.5 163 39.3
BcaC05g29805 Brassica carinata HOM05D014826 ORTHO05D014863 2.5e-13 80.1 138 38.4
THA.LOC104801128 Tarenaya hassleriana HOM05D004201 ORTHO05D012594 2.5e-13 80.1 162 34.0
BcaC05g30039 Brassica carinata HOM05D014826 ORTHO05D014863 3.2e-13 79.7 159 37.1
A10p02210 Brassica napus HOM05D004201 ORTHO05D012052 4.2e-13 79.3 163 38.7
C05p02080 Brassica napus HOM05D004201 ORTHO05D012052 1.2e-12 77.8 156 39.7
BolC5t28985H Brassica oleracea HOM05D004201 ORTHO05D012052 1.2e-12 77.8 156 39.7
AL6G37010 Arabidopsis lyrata HOM05D004201 ORTHO05D011677 1.6e-12 77.4 173 34.1
AL8G28550 Arabidopsis lyrata HOM05D004201 ORTHO05D011677 1.6e-12 77.4 173 34.1
C05p60930 Brassica napus HOM05D014826 ORTHO05D014863 1.6e-12 77.4 161 34.8
BolC5t34749H Brassica oleracea HOM05D014826 ORTHO05D014863 1.6e-12 77.4 161 34.8
Aa31LG1G23790 Aethionema arabicum HOM05D004201 ORTHO05D011677 3.5e-12 76.3 169 34.3
THA.LOC104801127 Tarenaya hassleriana HOM05D004201 ORTHO05D012594 3.5e-12 76.3 162 32.7
THA.LOC104801148 Tarenaya hassleriana HOM05D004201 ORTHO05D012594 3.5e-12 76.3 160 33.8
THA.LOC104801147 Tarenaya hassleriana HOM05D004201 ORTHO05D012594 4.6e-12 75.9 160 33.8
BraA01t04445Z Brassica rapa HOM05D014826 ORTHO05D014863 7.9e-12 75.1 167 32.3
THA.LOC104801126 Tarenaya hassleriana HOM05D004201 ORTHO05D012594 1.3e-11 74.3 162 32.7
BraA09t35931Z Brassica rapa HOM05D004201 ORTHO05D009648 1.8e-11 73.9 75 56.0
CARHR196080 Cardamine hirsuta HOM05D004201 ORTHO05D009648 1.8e-11 73.9 100 41.0
BcaB01g02543 Brassica carinata HOM05D012310 ORTHO05D012594 2.3e-11 73.6 183 32.8
AL1G13230 Arabidopsis lyrata HOM05D004201 ORTHO05D012052 5.1e-11 72.4 163 33.7
AL1G13220 Arabidopsis lyrata HOM05D004201 ORTHO05D012052 1.1e-10 71.2 172 31.4
BraA05t19067Z Brassica rapa HOM05D004201 ORTHO05D011677 1.9e-10 70.5 161 32.3
Aa31LG11G12520 Aethionema arabicum HOM05D004201 ORTHO05D009648 4.3e-10 69.3 77 44.2
BcaC05g24515 Brassica carinata HOM05D004201 ORTHO05D012052 7.4e-10 68.6 139 39.6
CARHR079840 Cardamine hirsuta HOM05D004201 ORTHO05D011677 9.7e-10 68.2 177 31.1
AT4G03590 Arabidopsis thaliana HOM05D004201 ORTHO05D009648 1.6e-09 67.4 173 34.7
CARHR079820 Cardamine hirsuta HOM05D004201 ORTHO05D011677 2.2e-09 67.0 84 48.8
AT4G03570 Arabidopsis thaliana HOM05D004201 ORTHO05D009648 3.7e-09 66.2 125 36.8
A05p30050 Brassica napus HOM05D004201 ORTHO05D042104 3.7e-09 66.2 103 40.8
BraA05t19763Z Brassica rapa HOM05D004201 ORTHO05D042104 3.7e-09 66.2 103 40.8
CARHR079790 Cardamine hirsuta HOM05D004201 ORTHO05D011677 4.8e-09 65.9 84 45.2
THA.LOC104809658 Tarenaya hassleriana HOM05D004201 ORTHO05D012052 3.1e-08 63.2 96 37.5
BNapus_Darmor_BZH_scaffold_118p00220 Brassica napus HOM05D014826 ORTHO05D014863 4.1e-08 62.8 154 31.2
Thhalv10029282m.g Eutrema salsugineum HOM05D012310 ORTHO05D012594 4.1e-08 62.8 173 30.6
Aa31LG1G23540 Aethionema arabicum HOM05D004201 ORTHO05D011677 6.9e-08 62.0 159 30.8
AL3G17220 Arabidopsis lyrata HOM05D004201 ORTHO05D014863 6.9e-08 62.0 85 40.0
C03p09430 Brassica napus HOM05D004201 ORTHO05D009648 7.7e-07 58.5 52 48.1
AL1G56010 Arabidopsis lyrata HOM05D004201 ORTHO05D011677 1.7e-06 57.4 175 34.3
AL6G49270 Arabidopsis lyrata HOM05D012310 ORTHO05D012594 2.9e-06 56.6 174 27.0
THA.LOC104801560 Tarenaya hassleriana HOM05D004201 ORTHO05D012594 5.0e-06 55.8 147 27.2
AT3G05685 Arabidopsis thaliana HOM05D004201 ORTHO05D031360 6.5e-06 55.5 77 41.6


User provided reference genes

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