Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT5G17070 Arabidopsis thaliana HOM05D006369 ORTHO05D007764 1.6e-136 489.6 278 100.0
CARHR196110 Cardamine hirsuta HOM05D006369 ORTHO05D007764 1.3e-106 390.2 276 80.4
AL6G28090 Arabidopsis lyrata HOM05D006369 ORTHO05D007764 2.1e-99 366.3 223 89.2
Carub.0006s1525 Capsella rubella HOM05D006369 ORTHO05D007764 6.6e-98 361.3 274 77.0
Thhalv10014449m.g Eutrema salsugineum HOM05D006369 ORTHO05D007764 1.6e-96 356.7 273 73.6
Sp6g27090 Schrenkiella parvula HOM05D006369 ORTHO05D007764 1.4e-95 353.6 275 74.5
A02p03940 Brassica napus HOM05D006369 ORTHO05D007764 1.1e-92 344.0 238 79.8
BcaC03g18532 Brassica carinata HOM05D006369 ORTHO05D007764 2.1e-91 339.7 237 78.1
C02p08760 Brassica napus HOM05D006369 ORTHO05D007764 2.1e-91 339.7 274 70.8
BraA02t05358Z Brassica rapa HOM05D006369 ORTHO05D007764 2.1e-91 339.7 239 79.5
BolC2t06790H Brassica oleracea HOM05D006369 ORTHO05D007764 1.3e-90 337.0 237 77.6
BcaNung00427 Brassica carinata HOM05D006369 ORTHO05D007764 3.0e-90 335.9 278 72.7
BcaB01g04960 Brassica carinata HOM05D006369 ORTHO05D007764 2.6e-86 322.8 279 71.0
Aa31LG11G12610 Aethionema arabicum HOM05D006369 ORTHO05D007764 2.8e-64 249.6 253 62.5
THA.LOC104820876 Tarenaya hassleriana HOM05D006369 ORTHO05D007764 2.8e-64 249.6 255 60.8
CiPaw.06G019700 Carya illinoinensis HOM05D006369 ORTHO05D007764 7.2e-52 208.4 224 56.2
Cfa015892 Carpinus fangiana HOM05D006369 ORTHO05D007764 5.2e-50 202.2 202 58.9
Ciclev10021854m.g Citrus clementina HOM05D006369 ORTHO05D007764 6.7e-50 201.8 203 59.6
CiPaw.05G237500 Carya illinoinensis HOM05D006369 ORTHO05D007764 8.8e-50 201.4 229 53.3
Dinv29169 Davidia involucrata HOM05D006369 ORTHO05D007764 4.4e-49 199.1 202 56.9
Migut.F00102 Erythranthe guttata HOM05D006369 ORTHO05D007764 9.7e-49 198.0 208 59.1
MELO3C024871.2 Cucumis melo HOM05D006369 ORTHO05D007764 2.2e-48 196.8 208 57.7
FvH4_7g33790 Fragaria vesca HOM05D006369 ORTHO05D007764 2.2e-48 196.8 225 52.4
FAN10G1961 Fragaria x ananassa HOM05D006369 ORTHO05D007764 3.7e-48 196.1 225 52.4
FAN10G2535 Fragaria x ananassa HOM05D006369 ORTHO05D007764 3.7e-48 196.1 225 52.4
Atru.chr7.1119 Acer truncatum HOM05D006369 ORTHO05D007764 6.3e-48 195.3 213 55.4
ClCG10G009050 Citrullus lanatus HOM05D006369 ORTHO05D007764 6.3e-48 195.3 224 54.0
Potri.019G052400 Populus trichocarpa HOM05D006369 ORTHO05D007764 6.3e-48 195.3 198 58.1
Manes.08G163800 Manihot esculenta HOM05D006369 ORTHO05D007764 8.2e-48 194.9 204 55.4
CANSAT21G0373 Cannabis sativa HOM05D006369 ORTHO05D007764 1.4e-47 194.1 222 54.5
MSTRG.8579 Avicennia marina HOM05D006369 ORTHO05D007764 1.8e-47 193.7 205 55.6
FAN01G2653 Fragaria x ananassa HOM05D006369 ORTHO05D007764 1.8e-47 193.7 225 52.0
CsaV3_4G008720 Cucumis sativus L. HOM05D006369 ORTHO05D007764 2.4e-47 193.4 210 55.2
TAR365G0740 Trochodendron aralioides HOM05D006369 ORTHO05D007764 2.4e-47 193.4 220 52.7
FAN03G1142 Fragaria x ananassa HOM05D006369 ORTHO05D007764 4.1e-47 192.6 227 51.5
FAN03G2967 Fragaria x ananassa HOM05D006369 ORTHO05D007764 4.1e-47 192.6 227 51.5
Prupe.2G324400 Prunus persica HOM05D006369 ORTHO05D007764 5.3e-47 192.2 223 51.6
Nitab4.5_0000820g0010 Nicotiana tabacum HOM05D006369 ORTHO05D007764 9.1e-47 191.4 207 53.1
RcHm_v2.0_Chr1g0383921 Rosa chinensis HOM05D006369 ORTHO05D007764 1.6e-46 190.7 228 51.3
Cc02_g00390 Coffea canephora HOM05D006369 ORTHO05D007764 2.6e-46 189.9 223 52.0
MD07G1306400 Malus domestica HOM05D006369 ORTHO05D007764 4.5e-46 189.1 204 53.9
VMungo1127G0993 Vigna mungo HOM05D006369 ORTHO05D007764 5.9e-46 188.7 212 56.1
Actinidia00694 Actinidia chinensis HOM05D006369 ORTHO05D007764 2.2e-45 186.8 204 54.9
MD01G1234200 Malus domestica HOM05D006369 ORTHO05D007764 3.8e-45 186.0 205 54.1
Phvul.011G021200 Phaseolus vulgaris HOM05D006369 ORTHO05D007764 1.9e-44 183.7 203 55.7
Sed0025457 Sechium edule HOM05D006369 ORTHO05D007764 3.2e-44 183.0 245 48.2
BraA03t10137Z Brassica rapa HOM05D006369 ORTHO05D007764 4.2e-44 182.6 168 64.9
Lj1A1033G61 Lonicera japonica HOM05D006369 ORTHO05D007764 4.2e-44 182.6 205 54.6
Nitab4.5_0000001g0150 Nicotiana tabacum HOM05D006369 ORTHO05D007764 4.2e-44 182.6 207 53.6
Gohir.A07G176900 Gossypium hirsutum HOM05D006369 ORTHO05D007764 5.5e-44 182.2 222 54.5
Thecc.03G000800 Theobroma cacao HOM05D006369 ORTHO05D007764 5.5e-44 182.2 179 58.1
SGA_v2.0_scaffold18G08505 Striga asiatica HOM05D006369 ORTHO05D007764 1.6e-43 180.6 221 53.4
Nn3g21321 Nelumbo nucifera HOM05D006369 ORTHO05D007764 2.1e-43 180.3 243 48.6
Gohir.D07G184401 Gossypium hirsutum HOM05D006369 ORTHO05D007764 2.7e-43 179.9 221 54.3
Gorai.001G204600 Gossypium raimondii HOM05D006369 ORTHO05D007764 2.7e-43 179.9 205 55.6
Eucgr.A02962 Eucalyptus grandis HOM05D006369 ORTHO05D007764 4.7e-43 179.1 190 55.3
Solyc03g062680.3 Solanum lycopersicum HOM05D006369 ORTHO05D007764 4.7e-43 179.1 209 54.5
Sopen03g015000 Solanum pennellii HOM05D006369 ORTHO05D007764 4.7e-43 179.1 209 54.5
Lalb_Chr19g0139881 Lupinus albus HOM05D006369 ORTHO05D007764 8.0e-43 178.3 185 57.8
SalBow4G3280 Salvia bowleyana HOM05D006369 ORTHO05D007764 8.0e-43 178.3 202 52.5
GSVIVG01024423001 Vitis vinifera HOM05D006369 ORTHO05D007764 1.0e-42 177.9 188 56.9
Ca_04928_v3 Cicer arietinum L. HOM05D006369 ORTHO05D007764 3.0e-42 176.4 196 53.6
Duzib211G0044 Durio zibethinus HOM05D006369 ORTHO05D007764 8.8e-42 174.9 219 52.5
Glyma.11G092500 Glycine max HOM05D006369 ORTHO05D007764 1.2e-41 174.5 195 56.4
CSS0035893 Camellia sinensis var. sinensis HOM05D006369 ORTHO05D007764 3.4e-41 172.9 216 49.1
CAN.G317.12 Capsicum annuum HOM05D006369 ORTHO05D007764 3.4e-41 172.9 203 53.2
Glyma.12G018800 Glycine max HOM05D006369 ORTHO05D007764 3.4e-41 172.9 213 52.1
HanXRQChr17g0541681 Helianthus annuus HOM05D006369 ORTHO05D007764 2.8e-40 169.9 210 51.4
PGR042G2784 Punica granatum HOM05D006369 ORTHO05D007764 2.8e-40 169.9 220 48.6
Aqoxy2G03109 Aquilegia oxysepala HOM05D006369 ORTHO05D007764 4.8e-40 169.1 231 46.3
Hund18049 Selenicereus undatus HOM05D006369 ORTHO05D007764 4.8e-40 169.1 221 48.9
Haze_00598 Corylus avellana HOM05D006369 ORTHO05D007764 4.1e-39 166.0 167 58.1
Psat7g171520 Pisum sativum HOM05D006369 ORTHO05D007764 5.3e-39 165.6 203 49.8
Lsat_1_v5_gn_3_37940 Lactuca sativa HOM05D006369 ORTHO05D007764 1.6e-38 164.1 213 50.7
Ah.08g212670 Amaranthus hybridus HOM05D006369 ORTHO05D007764 2.7e-38 163.3 226 48.2
Lj3g0017971 Lotus japonicus HOM05D006369 ORTHO05D007764 2.7e-38 163.3 233 47.2
Medtr4g077610 Medicago truncatula HOM05D006369 ORTHO05D007764 7.7e-38 161.8 197 51.3
Peaxi162Scf00076g00928 Petunia axillaris HOM05D006369 ORTHO05D007764 8.5e-37 158.3 292 38.7
EL10Ac7g17391 Beta vulgaris HOM05D006369 ORTHO05D007764 2.5e-36 156.8 195 50.3
Psat1g047200 Pisum sativum HOM05D006369 ORTHO05D007764 5.5e-36 155.6 125 64.8
arahy.Tifrunner.gnm1.ann1.WFP97B Arachis hypogaea HOM05D006369 ORTHO05D007764 9.4e-36 154.8 242 45.9
ECA246G2850 Erigeron canadensis HOM05D006369 ORTHO05D007764 9.4e-36 154.8 212 50.0
vmacro02505 Vaccinium macrocarpon HOM05D006369 ORTHO05D007764 2.7e-35 153.3 254 43.7
TPR.G39567 Trifolium pratense HOM05D006369 ORTHO05D007764 8.0e-35 151.8 230 45.7
Sc05g0004440 Simmondsia chinensis HOM05D006369 ORTHO05D007764 1.4e-34 151.0 163 54.6
Oeu005324.1 Olea europaea HOM05D006369 ORTHO05D007764 3.0e-34 149.8 175 54.3
PSO170G0520 Papaver somniferum HOM05D006369 ORTHO05D007764 8.8e-34 148.3 207 44.9
PSO210G6912 Papaver somniferum HOM05D006369 ORTHO05D007764 1.2e-33 147.9 207 44.9
Psat1g047280 Pisum sativum HOM05D006369 ORTHO05D007764 1.5e-33 147.5 120 64.2
arahy.Tifrunner.gnm1.ann1.F9R2PF Arachis hypogaea HOM05D006369 ORTHO05D007764 9.8e-33 144.8 257 43.2
MBI06_g08525_MAGBIO Magnolia biondii HOM05D006369 ORTHO05D007764 1.4e-31 141.0 251 41.0
Psat1g047240 Pisum sativum HOM05D006369 ORTHO05D007764 2.4e-31 140.2 150 53.3
unitig_747.g21708 Utricularia gibba HOM05D006369 ORTHO05D007764 1.2e-30 137.9 251 40.2
Os06g0300700 Oryza sativa ssp. japonica HOM05D006369 ORTHO05D007764 2.9e-29 133.3 232 41.4
CDE02G3455 Ceratophyllum demersum HOM05D006369 ORTHO05D007764 6.6e-29 132.1 216 44.4
BolC3t13440H Brassica oleracea HOM05D006369 ORTHO05D007764 4.2e-28 129.4 107 76.6
Zm00001eb381130 Zea mays HOM05D006369 ORTHO05D007764 1.6e-27 127.5 190 43.2
HPP92_026820 Vanilla planifolia HOM05D006369 ORTHO05D007764 8.0e-27 125.2 204 42.2
DCAR_020401 Daucus carota HOM05D006369 ORTHO05D007764 1.5e-25 120.9 186 44.1
Rhsim13G0016700 Rhododendron simsii HOM05D006369 ORTHO05D007764 2.2e-24 117.1 280 37.5
C03p09390 Brassica napus HOM05D006369 ORTHO05D007764 1.2e-22 111.3 107 65.4
SEGI_01011 Sequoiadendron giganteum HOM05D006369 ORTHO05D007764 1.2e-22 111.3 234 37.6
A03p08120 Brassica napus HOM05D006369 ORTHO05D007764 1.6e-22 110.9 175 50.9
BcaB01g05232 Brassica carinata HOM05D006369 ORTHO05D007764 5.9e-22 109.0 107 64.5
ATR0213G006 Amborella trichopoda HOM05D006369 ORTHO05D007764 1.7e-21 107.5 187 44.9
AagrBONN_evm.TU.Sc2ySwM_344.1770 Anthoceros agrestis HOM05D006369 ORTHO05D007764 2.3e-18 97.1 142 42.3
CBR_g17900 Chara braunii HOM05D006369 ORTHO05D007764 3.1e-18 96.7 179 36.3
Dinv06133 Davidia involucrata HOM05D006369 ORTHO05D007764 1.1e-15 88.2 84 54.8
Pp3c20_5600 Physcomitrium patens HOM05D006369 ORTHO05D007764 5.4e-15 85.9 256 34.4
COL.COLO4_13442 Corchorus olitorius HOM05D006369 ORTHO05D007764 2.0e-14 84.0 171 40.9
Mapoly0084s0069 Marchantia polymorpha HOM05D006369 ORTHO05D007764 5.0e-13 79.3 232 32.3
SMO141G0301 Selaginella moellendorffii HOM05D006369 ORTHO05D007764 1.6e-11 74.3 118 41.5
Cpa.g.sc39.77 Carica papaya HOM05D006369 ORTHO05D007764 4.7e-11 72.8 50 68.0
Sabra19G0056200 Salix brachista HOM05D006369 ORTHO05D007764 1.2e-09 68.2 44 79.5
C03p09450 Brassica napus HOM05D006369 ORTHO05D007764 6.4e-08 62.4 57 68.4
RcHm_v2.0_Chr5g0041771 Rosa chinensis HOM05D006369 ORTHO05D007764 1.9e-07 60.8 64 46.9
Hma1.2p1_1235F.1_g269100 Hydrangea macrophylla HOM05D006369 ORTHO05D007764 3.2e-07 60.1 130 40.8
Cre10.g463700 Chlamydomonas reinhardtii HOM05D006369 ORTHO05D007764 7.1e-07 58.9 115 35.7
Sabra19G0056300 Salix brachista HOM05D006369 ORTHO05D007764 6.0e-06 55.8 88 47.7


User provided reference genes

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